mRNA_H-akashiwo_Contig1156.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1156.5.1
Unique NamemRNA_H-akashiwo_Contig1156.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1156.5.1 vs. uniprot
Match: A0A7S2XZ70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ70_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.700e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:    2 REPIPDTMFYRNDDLAIEAGKERPKLQDLLKGVPQIGNDAVSAAPSDKGEGSIRGDEEMEEAAPKSSGYNFGMWEGVFIRCLLNIW 259
            REP+P+T+FYR +D A+     RPKL DLL  +  I N+   A    +  GS+     ++E A   +GY+FGMWEGVFIRCLLNIW
Sbjct:   20 REPLPNTVFYRKNDDAM-----RPKLGDLLNDMHGI-NEGRGAVDDVEQPGSMN--PVVQEEA--KTGYSFGMWEGVFIRCLLNIW 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1156.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2XZ70_9STRA2.700e-1348.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1156contigH-akashiwo_Contig1156:60033..60551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size260
Hectar predicted targeting categoryother localisation
Exons3
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.5132551-CDS-H-akashiwo_Contig1156:60032..600651681387100.5132551-CDS-H-akashiwo_Contig1156:60032..60065Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 60033..60065 -
1681387100.5232499-CDS-H-akashiwo_Contig1156:60193..602791681387100.5232499-CDS-H-akashiwo_Contig1156:60193..60279Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 60194..60279 -
1681387100.5327952-CDS-H-akashiwo_Contig1156:60411..605291681387100.5327952-CDS-H-akashiwo_Contig1156:60411..60529Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 60412..60529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.5492718-UTR-H-akashiwo_Contig1156:60529..605511681387100.5492718-UTR-H-akashiwo_Contig1156:60529..60551Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1156 60530..60551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1156.5.1prot_H-akashiwo_Contig1156.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1156 60033..60529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1156.5.1

>prot_H-akashiwo_Contig1156.5.1 ID=prot_H-akashiwo_Contig1156.5.1|Name=mRNA_H-akashiwo_Contig1156.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=79bp
MFYRNDDLAIEAGKERPKLQDLLKGVPQIGNDAVSAAPSDKGEGSIRGDE
EMEEAAPKSSGYNFGMWEGVFIRCLLNIW
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mRNA from alignment at H-akashiwo_Contig1156:60033..60551-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1156.5.1 ID=mRNA_H-akashiwo_Contig1156.5.1|Name=mRNA_H-akashiwo_Contig1156.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=519bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:60033..60551- (Heterosigma akashiwo CCMP452)
CCGCGAACCGATCCCAGATACCATGTTTTATCGCAATGATGATCTTGCGA
TTGAAGCAGGGAAGGAACGTCCAAAGCTTCAGGACTTGCTGAAGGGGGTG
CCTCAAATAGGCAATGATGCCGTTTCAGCTGCGCCAAGCGGTATGCCAGT
TGGTTGTTGGTATTTCAATGAAAAGCAAAACCAAATAGATTTGGCAATGT
TGTTACTACCTGTCTTTGGTGTTTTTTTCCCCCATTAACTCTTTACTCTC
CCTGTTTTGATTAACTGATTAGATAAAGGTGAAGGCAGCATTAGAGGCGA
TGAAGAAATGGAAGAGGCGGCACCAAAATCATCAGGCTATAACTTTGGCA
TGTGGGAGGTAAAAAGGGTCTATACAAGGAACAAAAGTTGTTAATTCCTT
TCATTTGTTGTCCTTGATCATGAACATTAGTGTTTTAGTAGCATCTTCCA
ACTGGCTGTACCATTCCATCACGATGTGCACCACAGGGCGTTTTCATTCG
GTGCCTACTGAATATCTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1156:60033..60551-

>mRNA_H-akashiwo_Contig1156.5.1 ID=mRNA_H-akashiwo_Contig1156.5.1|Name=mRNA_H-akashiwo_Contig1156.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=237bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:60033..60551- (Heterosigma akashiwo CCMP452)
ATGTTTTATCGCAATGATGATCTTGCGATTGAAGCAGGGAAGGAACGTCC
AAAGCTTCAGGACTTGCTGAAGGGGGTGCCTCAAATAGGCAATGATGCCG
TTTCAGCTGCGCCAAGCGATAAAGGTGAAGGCAGCATTAGAGGCGATGAA
GAAATGGAAGAGGCGGCACCAAAATCATCAGGCTATAACTTTGGCATGTG
GGAGGGCGTTTTCATTCGGTGCCTACTGAATATCTGG
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