mRNA_H-akashiwo_Contig1156.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1156.4.1
Unique NamemRNA_H-akashiwo_Contig1156.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: A0A7S4DCW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCW1_HETAK)

HSP 1 Score: 116 bits (290), Expect = 3.170e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVTISGWGPVVYAGIFA 169
            PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVTISGWGPVVYAGIFA
Sbjct:  127 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVTISGWGPVVYAGIFA 182          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: A0A5B8XBR2_9BILA (Solute carrier transporter 12 (Fragment) n=1 Tax=Meara stichopi TaxID=84115 RepID=A0A5B8XBR2_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 2.280e-7
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVV----------------------------TISGWGPVVYAGIFA 169
            P+GTLLAI +ST +Y +MAW+ GCT+ RE +  + +S  V+                            TIS +GP++ AGIFA
Sbjct:  409 PKGTLLAILISTIIYVIMAWIAGCTVAREVVVAFVNSSLVLDAAPSAGPVCLNPEGCSYGLVHDTSVAETISAFGPLIVAGIFA 492          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: UPI00077A4C26 (solute carrier family 12 member 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A4C26)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-7
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSI------------------------AVVTISGWGPVVYAGIFA 169
            P+GTLLAI +ST VY ++AW +G  ++RE L    +++                         +  +SGWGP+V AGIFA
Sbjct:  304 PKGTLLAILISTLVYVMLAWFVGACVEREALGLVHNAVNATNGSLASCVSQECQYGLLNDFQVMEAVSGWGPIVTAGIFA 383          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: UPI001CF1ECDB (solute carrier family 12 member 2-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1ECDB)

HSP 1 Score: 54.7 bits (130), Expect = 3.110e-7
Identity = 28/80 (35.00%), Postives = 41/80 (51.25%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSI------------------------AVVTISGWGPVVYAGIFA 169
            P+GTLLAI +ST VY ++AW +G  ++RE L    +++                         +  +SGWGP+V AGIFA
Sbjct:  386 PKGTLLAILISTLVYVMLAWFVGACVEREALGLVHNAVNATNGSLASCVSQECQYGLLNDFQVMEAVSGWGPIVTAGIFA 465          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: A0A3M6UAT8_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UAT8_POCDA)

HSP 1 Score: 54.3 bits (129), Expect = 4.220e-7
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVT----------------------ISGWGPVVYAGIFA 169
            P+GTLLAI +ST VY ++AW +G  ++RE L   ++ +   T                      +SGWGP+V AGIFA
Sbjct:  410 PKGTLLAILISTIVYVMLAWFVGGCVEREALGFVQEVLQNKTLASCVEQECRYGLLNDFQVMEEVSGWGPIVTAGIFA 487          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: A0A2B4SPH4_STYPI (Solute carrier family 12 member 2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SPH4_STYPI)

HSP 1 Score: 53.5 bits (127), Expect = 7.960e-7
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVT-------------------------ISGWGPVVYAGIFA 169
            P+GTLLAI +ST VY ++AW +G  ++RE L   ++ +   T                         +SGWGP+V AGIFA
Sbjct:  386 PKGTLLAILISTLVYIMLAWFVGGCVEREALGFVQEVLQNTTNETLASCLEQECKYGLLNNFQVMEEVSGWGPIVTAGIFA 466          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: UPI001CF53A8A (solute carrier family 12 member 2-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF53A8A)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 27/80 (33.75%), Postives = 40/80 (50.00%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSI------------------------AVVTISGWGPVVYAGIFA 169
            P+GTLLA+ +ST VY ++A+ LG  ++RE L    D++                         +  +SGWGP+V AGI A
Sbjct:  389 PKGTLLAVLISTLVYVMLAFFLGACVEREALGLVHDAVNATNGSITSCVSQECQYGLLHDFQVIAAVSGWGPIVTAGILA 468          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: T1EMA0_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EMA0_HELRO)

HSP 1 Score: 52.4 bits (124), Expect = 2.030e-6
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVT--ISGWGPVVYAGIFA 169
            P+GTLLAI ++T +Y L+AW+ G  + R+     +D I+ VT  IS +GP+  AGIF+
Sbjct:  240 PKGTLLAIIITTIIYLLIAWITGLCVKRDANGIIKDMISSVTQLISIFGPITVAGIFS 297          
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Match: A0A0L0DG96_THETB (Na-K-2Cl cotransporter 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DG96_THETB)

HSP 1 Score: 52.0 bits (123), Expect = 2.780e-6
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 2
Query:    2 PRGTLLAIALSTFVYALMAWLLGCTIDRETLKDYEDSIAVVTISGWGPVVYAGIFA 169
            P+GTLLAI +ST VY  M W++     RE LK   +++ ++ IS  GPV+ AGIFA
Sbjct:  284 PKGTLLAIGISTVVYIGMVWIIAAVSTREKLK--TNTLIMMDISVAGPVIVAGIFA 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1156.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S4DCW1_HETAK3.170e-29100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5B8XBR2_9BILA2.280e-735.71Solute carrier transporter 12 (Fragment) n=1 Tax=M... [more]
UPI00077A4C263.100e-735.00solute carrier family 12 member 2-like n=1 Tax=Acr... [more]
UPI001CF1ECDB3.110e-735.00solute carrier family 12 member 2-like n=1 Tax=Acr... [more]
A0A3M6UAT8_POCDA4.220e-737.18Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A2B4SPH4_STYPI7.960e-735.80Solute carrier family 12 member 2 n=1 Tax=Stylopho... [more]
UPI001CF53A8A1.490e-633.75solute carrier family 12 member 2-like n=1 Tax=Acr... [more]
T1EMA0_HELRO2.030e-644.83Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A0L0DG96_THETB2.780e-648.21Na-K-2Cl cotransporter 1 n=1 Tax=Thecamonas trahen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1156contigH-akashiwo_Contig1156:49471..50363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.4767823-CDS-H-akashiwo_Contig1156:49471..495581681387100.4767823-CDS-H-akashiwo_Contig1156:49471..49558Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 49472..49558 -
1681387100.4860485-CDS-H-akashiwo_Contig1156:50279..503631681387100.4860485-CDS-H-akashiwo_Contig1156:50279..50363Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 50280..50363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1156.4.1prot_H-akashiwo_Contig1156.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1156 49472..50363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1156.4.1

>prot_H-akashiwo_Contig1156.4.1 ID=prot_H-akashiwo_Contig1156.4.1|Name=mRNA_H-akashiwo_Contig1156.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
PSWHAVGDSSFYFCIRAHGLAAWVHHRPGDAEGLRGQHRGGDHLRVGARG
VRGHLRG
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mRNA from alignment at H-akashiwo_Contig1156:49471..50363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1156.4.1 ID=mRNA_H-akashiwo_Contig1156.4.1|Name=mRNA_H-akashiwo_Contig1156.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=893bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:49471..50363- (Heterosigma akashiwo CCMP452)
CCCTCGTGGCACGCTGTTGGCGATAGCTCTTTCTACTTTTGTATACGCGC TCATGGCCTGGCTGCTTGGGTGCACCATCGACCGGTAAGGCAGCTTTCTA ACCCCCTCCAGCCCCAAATTCCATCGTACCATCCAGTCCCTCCAGATATG GTCCACTCAAACATACTGTATATAGTCTGGTTATAGTAGGGCATGTGGTG GTAAAGAGGCTGGCTTTTTCTGGATGTTTTGTAGGAGCGGGAGGTGGAAC CTATGTAGACGTAGCAGGGTCCGCATATGGAGGCCGGGACTTCGGTCCTT GTAGTTATCCGAGAGGCTGGACCTTAAATAAACTAAAATCATCATCATCA TCATCATCATGCTGTATATAATTCTATTTATTATTATCTAAAATCATGGT ATTTATTTATGCTGTACGTTGTGATGTGCAACGATATGCAAGAGGAAGAG CCTGTGTGTTTGTTTTAGAATGGGGATTCTCTAATTCATTATAGCTAAAA AAAAAAATGCTTAAAATTGCTACTATAAGTCACTTACAGTAGACTTTCCC GTTTGTGATTTCAATAACTTCTACCGCCATCACCAAGCCATTCGCGGAGC ACCCACGGTCGGTCGCCAGGCAGGGCTTAAGCAAGCTTCTTTTCTTGGCC TGCTGGGCAAGGTGTGCCTTCCCACGCTACCACCCGAAATGTTCTTCACT CTTCAACAGCGCGGGGTGTGTTTTTGATGAAGCAGTTGCCGCCGCTCCGC TTGCCTGGCGGGGGGTGGGGGGGGCTGCGGGCCCTGTGGCGCGGCGCCGC CGCAGGGAGACGCTGAAGGACTACGAGGACAGCATCGCGGTGGTGACCAT CTCCGGGTGGGGGCCCGTGGTGTACGCGGGCATCTTCGCGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1156:49471..50363-

>mRNA_H-akashiwo_Contig1156.4.1 ID=mRNA_H-akashiwo_Contig1156.4.1|Name=mRNA_H-akashiwo_Contig1156.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:49471..50363- (Heterosigma akashiwo CCMP452)
CCCTCGTGGCACGCTGTTGGCGATAGCTCTTTCTACTTTTGTATACGCGC
TCATGGCCTGGCTGCTTGGGTGCACCATCGACCGGGAGACGCTGAAGGAC
TACGAGGACAGCATCGCGGTGGTGACCATCTCCGGGTGGGGGCCCGTGGT
GTACGCGGGCATCTTCGCGGC
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