mRNA_H-akashiwo_Contig1155.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1155.7.1
Unique NamemRNA_H-akashiwo_Contig1155.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1155.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1155contigH-akashiwo_Contig1155:157045..157646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size242
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387099.9825506-CDS-H-akashiwo_Contig1155:157044..1570951681387099.9825506-CDS-H-akashiwo_Contig1155:157044..157095Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 157045..157095 -
1681387099.9908428-CDS-H-akashiwo_Contig1155:157302..1574071681387099.9908428-CDS-H-akashiwo_Contig1155:157302..157407Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 157303..157407 -
1681387100.0030813-CDS-H-akashiwo_Contig1155:157561..1576271681387100.0030813-CDS-H-akashiwo_Contig1155:157561..157627Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 157562..157627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.0139363-UTR-H-akashiwo_Contig1155:157627..1576461681387100.0139363-UTR-H-akashiwo_Contig1155:157627..157646Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1155 157628..157646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1155.7.1prot_H-akashiwo_Contig1155.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1155 157045..157627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1155.7.1

>prot_H-akashiwo_Contig1155.7.1 ID=prot_H-akashiwo_Contig1155.7.1|Name=mRNA_H-akashiwo_Contig1155.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
MEELPEEVLYQPKPLICVICEEGIDQTEIQEQLIAALKLADSETPDSVGM
AFQILSENHIFPPKKRPASEPGMA
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mRNA from alignment at H-akashiwo_Contig1155:157045..157646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1155.7.1 ID=mRNA_H-akashiwo_Contig1155.7.1|Name=mRNA_H-akashiwo_Contig1155.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=602bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:157045..157646- (Heterosigma akashiwo CCMP452)
CTGTCCGCACAAAATCAAAATGGAGGAGCTTCCAGAGGAGGTGCTCTACC
AGCCCAAACCGTTGATATGTGTGATTTGCGAAGAGGTAAAGCATGTTTTT
GGTTGTAGTAGGCTGTTCACCTCAGCAAACCATAATGTTTTTGTTGTTCA
CTGTTGGTTTTATTATTTTTTAAGTTTGATCTTGGCACAATCGATCTTAA
TTTGGCTTTCCTGGGTGAATATTTCGCGTTCTACACCAGGGTATTGATCA
GACTGAAATCCAAGAGCAGCTTATTGCTGCCTTGAAACTGGCTGACTCAG
AAACACCCGACTCCGTTGGGATGGCCTTTCAGATTCTGTCAGAGGTGATG
ATTGCTTTAAAAGGAGTAAACATGCTTGGCATTTGTATTTGATTGGGTCT
GAATCATTATTGGTACTGCTGATTCAGCTCAATCCCTTTGAACAATAATA
ACAATGATGATAATAATAACAATAATTAACATGCTGTGGAGCTATACTCG
CTGATGATGGAAGCGGTTTTTCTGTTTAAACCCAACACCCTGCAATGCTA
GAACCACATATTCCCGCCCAAGAAGAGGCCTGCCTCTGAGCCAGGCATGG
CG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1155:157045..157646-

>mRNA_H-akashiwo_Contig1155.7.1 ID=mRNA_H-akashiwo_Contig1155.7.1|Name=mRNA_H-akashiwo_Contig1155.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:157045..157646- (Heterosigma akashiwo CCMP452)
ATGGAGGAGCTTCCAGAGGAGGTGCTCTACCAGCCCAAACCGTTGATATG
TGTGATTTGCGAAGAGGGTATTGATCAGACTGAAATCCAAGAGCAGCTTA
TTGCTGCCTTGAAACTGGCTGACTCAGAAACACCCGACTCCGTTGGGATG
GCCTTTCAGATTCTGTCAGAGAACCACATATTCCCGCCCAAGAAGAGGCC
TGCCTCTGAGCCAGGCATGGCG
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