mRNA_H-akashiwo_Contig1153.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1153.7.1
Unique NamemRNA_H-akashiwo_Contig1153.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A7S4DG78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG78_HETAK)

HSP 1 Score: 245 bits (626), Expect = 1.600e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 
Query:    1 GEEAESIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKLSSSGLAEQQTVSAMGIFDGRKK 366
            GEEAESIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKLSSSGLAEQQTVSAMGIFDGRKK
Sbjct:   91 GEEAESIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKLSSSGLAEQQTVSAMGIFDGRKK 212
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: W4H170_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H170_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.290e-6
Identity = 29/95 (30.53%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   16 SIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKL 300
            ++ +D +  +   S HPD+L+G+  P  ++ ++ A + + +   +G V    FL YY DL A +E DD+F  ++R+AW   GG G  + +  R++
Sbjct:  113 TVTVDEIASRFDTSHHPDILSGRLKPVDVLRQFLAVFESQS-DTNGVVTWHEFLNYYRDLGAGIENDDEFELIVRNAWHMSGGEGWCENSTCRRV 206
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: W4H007_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H007_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.380e-5
Identity = 29/95 (30.53%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   16 SIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKL 300
            ++ +D +  +   S HPD+L+G+  P  ++ ++ A + + +   +G V    FL YY DL A +E DD+F  ++R+AW   GG G  + +  R++
Sbjct:  217 TVTVDEIASRFDTSHHPDILSGRLKPVDVLRQFLAVFESQS-DTNGVVTWHEFLNYYRDLGAGIENDDEFELIVRNAWHMSGGEGWCENSTCRRV 310
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A7S3KF90_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KF90_EUPCR)

HSP 1 Score: 55.1 bits (131), Expect = 1.500e-5
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   19 IALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAW 249
            + LD +     AS HPDV+ GK T   ++ E+  +W    +  DG + +  F +Y+ D+SA V+ D+ F A+++SAW
Sbjct:  207 VKLDDIEKLYDASQHPDVMDGKKTEQEVILEFMQKWDTQEK--DGIITIEEFYDYFSDVSASVDTDEYFEAMMKSAW 281
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A397ALX0_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ALX0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-5
Identity = 29/95 (30.53%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   16 SIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAWTKLGGGGAWQRAAERKL 300
            ++ +D +  +   S HPD+L+G+  P  ++ ++ A +   +   +G V    FL YY DL A +E DD+F  ++R+AW   GG G  + +  R++
Sbjct:  294 TVTVDEIASRFDTSHHPDILSGRLKPVDVLRQFLAVFEGQS-DTNGVVTWHEFLNYYRDLGAGIENDDEFELIVRNAWHMSGGEGWCENSTCRRV 387
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A7S3IFE3_9SPIT (Hypothetical protein n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IFE3_9SPIT)

HSP 1 Score: 52.0 bits (123), Expect = 3.680e-5
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   19 IALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAW 249
            + LD +      S HPD+L G  T   +  ++ + W    +  DG V L  F EY+ D+SA VE D+ F A+++S W
Sbjct:   58 VKLDDIAKLYDVSQHPDILQGTATQKEVYLKFMSLWDT--QTPDGIVTLEEFCEYFRDVSAAVEKDEYFEAMMKSCW 132
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A8J8NQL6_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NQL6_HALGN)

HSP 1 Score: 54.3 bits (129), Expect = 3.970e-5
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   16 SIALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAW 249
            ++ LD +      S HPDV+ G+  P  +  E+   W       DG V +  FL+YY D+SA +++D+ F A+++SAW
Sbjct:  421 TVRLDDIAKLYDVSRHPDVVQGRKEPKQVYLEFMRLWDTQVA--DGIVTIEEFLDYYADVSASIDSDEYFGAMMQSAW 496
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BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: A0A1R2BPK7_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BPK7_9CILI)

HSP 1 Score: 53.9 bits (128), Expect = 5.310e-5
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:   19 IALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAW 249
            + LD +     AS HP+V AG+ T   +  ++   W       DG V +  F  YY D+SA +++D+ F A++RSAW
Sbjct:  409 VTLDDIAKIYDASKHPEVRAGRLTEEQVFRQFITMWDT--EKPDGIVTMKEFARYYEDISASIDSDNYFEAMIRSAW 483
[Close]
BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Match: G5C0P5_HETGA (Calcyphosin n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C0P5_HETGA)

HSP 1 Score: 51.2 bits (121), Expect = 9.600e-5
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   19 IALDALLDQMVASSHPDVLAGKTTPGAIMDEYRAQWPAYARPDDGRVDLGGFLEYYWDLSALVEADDDFLALLRSAW 249
            + +D L       SHP V +G+ T   ++  +   + A  R  DG+V L  F +YY  LSA V+ D++F+A++ SAW
Sbjct:   76 VTVDDLRGVYSGRSHPKVCSGEWTEEEVLQRFLDNFDA--RDKDGQVTLEEFQDYYSGLSASVDTDEEFVAMVTSAW 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1153.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S4DG78_HETAK1.600e-79100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W4H170_9STRA9.290e-630.53Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4H007_9STRA1.380e-530.53Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S3KF90_EUPCR1.500e-535.06Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]
A0A397ALX0_9STRA2.070e-530.53Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A7S3IFE3_9SPIT3.680e-535.06Hypothetical protein n=1 Tax=Strombidium inclinatu... [more]
A0A8J8NQL6_HALGN3.970e-534.62Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A1R2BPK7_9CILI5.310e-535.06Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
G5C0P5_HETGA9.600e-535.06Calcyphosin n=1 Tax=Heterocephalus glaber TaxID=10... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1153contigH-akashiwo_Contig1153:207058..209149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons3
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.8648994-UTR-H-akashiwo_Contig1153:207057..2072191681387098.8648994-UTR-H-akashiwo_Contig1153:207057..207219Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1153 207058..207219 -
1681387098.9120152-UTR-H-akashiwo_Contig1153:209121..2091491681387098.9120152-UTR-H-akashiwo_Contig1153:209121..209149Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1153 209122..209149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387098.8825815-CDS-H-akashiwo_Contig1153:207219..2074841681387098.8825815-CDS-H-akashiwo_Contig1153:207219..207484Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 207220..207484 -
1681387098.8959196-CDS-H-akashiwo_Contig1153:208715..2088351681387098.8959196-CDS-H-akashiwo_Contig1153:208715..208835Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 208716..208835 -
1681387098.9046357-CDS-H-akashiwo_Contig1153:209065..2091211681387098.9046357-CDS-H-akashiwo_Contig1153:209065..209121Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 209066..209121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1153.7.1prot_H-akashiwo_Contig1153.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1153 207220..209121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1153.7.1

>prot_H-akashiwo_Contig1153.7.1 ID=prot_H-akashiwo_Contig1153.7.1|Name=mRNA_H-akashiwo_Contig1153.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=147bp
MLFWTKWSQVATQMCWPERRPPGQSWTSTGRSGRPTRGRTTAGWTSGASS
STTGTSARWLRQMMIFLPCCARPGRNLVAGGHGREQQKESCRVQGWQNSR
LFLLWGSLMGGKSEERSRRVTVGDSVVSGGKCGGSGSIKLHLHCLI*
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mRNA from alignment at H-akashiwo_Contig1153:207058..209149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1153.7.1 ID=mRNA_H-akashiwo_Contig1153.7.1|Name=mRNA_H-akashiwo_Contig1153.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2092bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:207058..209149- (Heterosigma akashiwo CCMP452)
GGTGAAGAGGCCGAGTCAATCGCTCTGGATGCTCTTCTGGACCAAATGGT
CGCAAGTAGCCACCCAGATGTGCTGGCCGGAAAGGTAGGGACTTACTTAC
ATATAATGTACGGTGCACACATCACCCCCCACACTCCTTTAGCGCCATTG
CTTTCACCTCTTTGTCTTTTCCTGCCGCACCTGTGTGCTTTTTCCCCATG
GCCACTATCATGCAGGGCGACCCTTACCACCACCAACCCCCCTTCCCCCC
CCCCTCTGACGACCGCACCCTCTGCTGCCCCCCCCGCCGGCCGCCTCCCC
CCCCCCCCGCCCAGACGACCCCCGGGGCAATCATGGACGAGTACCGGGCG
CAGTGGCCGGCCTACGCGCGGCCGGACGACGGCCGGGTGGACCTCGGGGG
CTTCCTCGAGTACTACTGGGACCTCAGCGCGCTGGTGCGGGGCGGGGGCG
GGGGCGGGGGCGGGGCGGGGGGTCCTCCCTCCTCCCTCCGGCGGGAAAGC
GGCCAAGGAGGACAGCGCATGGGGCCGCGCGGTTGTGCTGGTGTTGCGGC
GTCCTCGCGGAGCTCGTTGCGGCGTGGACGTGGTGGGGTGCCCTTGCTGC
CGGCGCGCACTCAGCAATTATACTGTGCGGCGCGCAACAGGCCTCAAGTA
GAAAGCAGTTTTGCTGCTGTGTGGTCAAGAGCTCTACGGACTTCAAGCGC
ATTAGGCTCGTTGGCCAGGATCAAATCGGTTTTGATTTGCTTATCCTGGA
CAAATCAAGTTCTCAGTGCTACTCTTCTTGCTTGGCGTTGGGTTAGTGCC
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATGATTGTCAGTTTT
GGCAACGGTTGTGTGCTTCTAGCAGCAGAAGAAAGAGGAGGACCTCCTGT
TCGGGTTGTTGTTTCTTCTGGGAGTGCTGATGATGTTCTTGATTGCTTGT
ACTAAGTAGTAGTATAGTTGGCTGCTAGTAGTAGTTAGCTTCTGCTCATT
CCCACCAAATATTTTGTACTATGACTATACTGACGATGGCTTTTTTACTA
AGTCCGGCCGACTATTGTTGGTCGTTTTGACGTCGGACACTTACGCAACT
GCATCTGACATGAACGCAGACCCCCACAAATCATTTGGACACTTGTCTAG
GACATTCACGAGGACCCGCAAGTGAAATATCGGACATCTGGACAATTTTT
TTTAAATTGGACAACTAAAGAGATATAAAAGAGGACAACAAGATACAGGT
TACTGTTGCGGATAGCGGAAAACGGTCAACAATAGTCGGCCGGACTAAGT
AGCCGAAACCGGTCTGCAACAGTCCTTTTAAAATATTGAGATCATACATT
ATAATAATTTAATGATCTTCTTGTGTTTCATGCGCTACAGCAGTAACTTT
GGCCTTGGCCTAAAAGCTTTGATGGTGTCTGTGAAGCATTAGACAGGGCC
AACGTCTTCCTTTTGGAAAATCCCATGCCCTGATGGATGGTCTCATTATT
CAAAAGAATATAAATTTATTCTGGTGTATGATACATCTTTGTAACATGCC
CATACCCCCTCCACCCCCCAAAAAAGCTATTCGGTCCTTACCACTCTCTG
AACTATAAGTAATCACTGAATCCAATTCTGGCGCCACAAACTCTCTGAAC
TGATAATACCACCAGGTTGAGGCAGATGATGATTTTCTTGCCTTGCTGCG
CTCGGCCTGGACGAAACTTGGTGGCGGGGGGGCATGGCAGAGAGCAGCAG
AAAGAAAGCTGTCGAGTTCAGGGTTGGCAGAACAGCAGACTGTTTCTGCT
ATGGGGATCTTTGATGGGAGGAAAAAGTGAAGAAAGAAGCAGGAGGGTGA
CAGTAGGGGACAGTGTTGTGTCGGGAGGGAAATGTGGAGGGAGCGGCAGC
ATAAAATTACATTTACATTGTTTGATATAATTCCTCCCTGTAGGAATATG
GTGTGGAGTAGTATATGCAGTATGTCAACAATACATCATACAGCAGTACC
AGCAGGAGTTATTGGTTATCTCTGCAGGCTACTAAGCAAGGCATCATCAA
CAATAACAACCCACACAGTCACAATGATAAGCATAACTACTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1153:207058..209149-

>mRNA_H-akashiwo_Contig1153.7.1 ID=mRNA_H-akashiwo_Contig1153.7.1|Name=mRNA_H-akashiwo_Contig1153.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:207058..209149- (Heterosigma akashiwo CCMP452)
ATGCTCTTCTGGACCAAATGGTCGCAAGTAGCCACCCAGATGTGCTGGCC
GGAAAGACGACCCCCGGGGCAATCATGGACGAGTACCGGGCGCAGTGGCC
GGCCTACGCGCGGCCGGACGACGGCCGGGTGGACCTCGGGGGCTTCCTCG
AGTACTACTGGGACCTCAGCGCGCTGGTTGAGGCAGATGATGATTTTCTT
GCCTTGCTGCGCTCGGCCTGGACGAAACTTGGTGGCGGGGGGGCATGGCA
GAGAGCAGCAGAAAGAAAGCTGTCGAGTTCAGGGTTGGCAGAACAGCAGA
CTGTTTCTGCTATGGGGATCTTTGATGGGAGGAAAAAGTGAAGAAAGAAG
CAGGAGGGTGACAGTAGGGGACAGTGTTGTGTCGGGAGGGAAATGTGGAG
GGAGCGGCAGCATAAAATTACATTTACATTGTTTGATATAA
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