mRNA_H-akashiwo_Contig1153.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1153.2.1
Unique NamemRNA_H-akashiwo_Contig1153.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: B8C0M4_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0M4_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 1.500e-8
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   19 ALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTDV 165
            AL +CH  G+ HRDIKPEN+           HVVLIDFG AKDL  TD+
Sbjct:    8 ALEHCHEHGIVHRDIKPENVLLSQ----RGGHVVLIDFGTAKDLVYTDL 52          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A7S2SBX2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBX2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.750e-8
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    7 QTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTDV 165
            Q  DAL +CH  G+ HRD+KPENI       P   H++LIDFG AKDL +TD+
Sbjct:  313 QLLDALEHCHSCGIVHRDLKPENILLS----PKG-HIILIDFGTAKDLIQTDL 360          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A7S2C8F2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C8F2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.010e-8
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTD 162
            +AQ ADAL YCH QG+ HRDIKPEN+ +    P   + +   DFGLA  L + +
Sbjct:   87 VAQMADALEYCHSQGIVHRDIKPENLLYARPDPDETVKIA--DFGLAHLLKKDE 138          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: H3GVV5_PHYRM (Protein kinase domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=H3GVV5_PHYRM)

HSP 1 Score: 56.6 bits (135), Expect = 6.350e-8
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAK 144
            + + ADAL YCH QG+ HRD+KPEN+ +Q+     N  + + DFGLAK
Sbjct:  124 VKKLADALLYCHNQGIVHRDLKPENLLYQSTD--ENAEIKIADFGLAK 169          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: B7FTI8_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTI8_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 1.660e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    7 QTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTDV 165
            Q   A+ +CH+ GV HRD+KPENI           HV+LIDFG AKDL  TD+
Sbjct:  320 QLLAAVEHCHKHGVVHRDLKPENILLN-----GRGHVILIDFGTAKDLLETDL 367          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A520QDL4_9DELT (Non-specific serine/threonine protein kinase n=2 Tax=Myxococcales TaxID=29 RepID=A0A520QDL4_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 3.080e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   16 DALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKD 147
            D LA  H +G+ HRDIKPEN+ F TW     +HV L+DFG+AK+
Sbjct:  156 DGLAAAHDRGIVHRDIKPENV-FLTWNEQGEMHVKLLDFGVAKN 198          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A1E7FDD2_9STRA (Kinase-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDD2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.710e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    1 IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTDV 165
            ++Q  DAL + H  G+ HRD+KPEN+         + HVV+IDFG AKDL  TD+
Sbjct:  140 MSQLVDALEHLHSHGIVHRDLKPENVLLN-----EHNHVVVIDFGTAKDLIDTDL 189          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A662WDB6_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDB6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.690e-7
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAK 144
            + + ADAL YCH QG+ HRD+KPEN+ +Q+      I +   DFGLAK
Sbjct:  124 VKKLADALLYCHDQGIVHRDLKPENLLYQSTDESAEIKIA--DFGLAK 169          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A812NUX2_9DINO (MlkA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NUX2_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 1.060e-6
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRTDV 165
            + + ADAL YCH +G+ HRD+KPEN+ + +    ++  + + DFGLAK +   D+
Sbjct:  125 VRKIADALVYCHSEGIVHRDLKPENLLYAS--EADDAEIKVADFGLAKLVAEADM 177          
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Match: A0A2M8P3B0_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Phototrophicales bacterium TaxID=2364211 RepID=A0A2M8P3B0_9CHLR)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   13 ADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDLGRT 159
            A+A+ Y H QGV HRDIKP NI  +         ++L+DFG+AK+LG T
Sbjct:  485 ANAIDYAHAQGVIHRDIKPSNIFIRAGGTNRVAQIMLMDFGIAKNLGET 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1153.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C0M4_THAPS1.500e-855.10Protein kinase domain-containing protein (Fragment... [more]
A0A7S2SBX2_9STRA4.750e-852.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2C8F2_9STRA6.010e-848.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
H3GVV5_PHYRM6.350e-850.00Protein kinase domain-containing protein n=18 Tax=... [more]
B7FTI8_PHATC1.660e-750.94Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A520QDL4_9DELT3.080e-754.55Non-specific serine/threonine protein kinase n=2 T... [more]
A0A1E7FDD2_9STRA3.710e-747.27Kinase-like protein (Fragment) n=1 Tax=Fragilariop... [more]
A0A662WDB6_9STRA5.690e-750.00Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A812NUX2_9DINO1.060e-640.00MlkA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A2M8P3B0_9CHLR1.080e-648.98Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1153contigH-akashiwo_Contig1153:9096..9264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra81536
PFAMsPkinase
Model size170
Max annot lvl4776|Peronosporales
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.04e-08
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,3Q7IU@4776|Peronosporales
EC2.7.11.17
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
Cds size168
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387099.2168386-CDS-H-akashiwo_Contig1153:9095..92631681387099.2168386-CDS-H-akashiwo_Contig1153:9095..9263Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1153 9096..9263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1153.2.1prot_H-akashiwo_Contig1153.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1153 9096..9263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1153.2.1

>prot_H-akashiwo_Contig1153.2.1 ID=prot_H-akashiwo_Contig1153.2.1|Name=mRNA_H-akashiwo_Contig1153.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
IAQTADALAYCHRQGVAHRDIKPENIAFQTWQPPNNIHVVLIDFGLAKDL
GRTDVG
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mRNA from alignment at H-akashiwo_Contig1153:9096..9264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1153.2.1 ID=mRNA_H-akashiwo_Contig1153.2.1|Name=mRNA_H-akashiwo_Contig1153.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=169bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:9096..9264+ (Heterosigma akashiwo CCMP452)
ATTGCCCAAACAGCAGATGCACTTGCTTATTGCCATAGGCAGGGGGTGGC ACATAGAGACATCAAGCCAGAAAATATTGCTTTTCAGACTTGGCAACCAC CGAACAACATACATGTTGTCTTGATTGACTTTGGTTTGGCCAAGGACCTA GGGAGAACTGATGTGGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1153:9096..9264+

>mRNA_H-akashiwo_Contig1153.2.1 ID=mRNA_H-akashiwo_Contig1153.2.1|Name=mRNA_H-akashiwo_Contig1153.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig1153:9096..9264+ (Heterosigma akashiwo CCMP452)
ATTGCCCAAACAGCAGATGCACTTGCTTATTGCCATAGGCAGGGGGTGGC
ACATAGAGACATCAAGCCAGAAAATATTGCTTTTCAGACTTGGCAACCAC
CGAACAACATACATGTTGTCTTGATTGACTTTGGTTTGGCCAAGGACCTA
GGGAGAACTGATGTGGGG
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