mRNA_H-akashiwo_Contig1147.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1147.3.1
Unique NamemRNA_H-akashiwo_Contig1147.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A2I1H447_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1H447_9GLOM)

HSP 1 Score: 99.0 bits (245), Expect = 3.340e-21
Identity = 58/198 (29.29%), Postives = 96/198 (48.48%), Query Frame = 1
Query:    1 SSMAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDPVSLVPSQQKNFKDDRWKRSFAKKNVRGVIWCVDCGFPRSIY 588
            +++  IR   +E    L  + R SV+ V D LS+R  ++    +  + Y+  S  ++   F+ I  ID T++   T+      H +  D+++ H     YSFQ+KKC +  C  C P+R+ K+IF  L F+P+  L    +HY  F  LY     +    +PS  ++ K+D         N+R +I C  C  PR I+
Sbjct:   37 NTLEEIRNAAQENMK-LRLKLRNSVKAVQDLLSERTKRLKLNEKNFQIYNPASLINIDETFEIIHRIDSTLQQEETSINSLNKHYELQDFIKSHYQIRTYSFQIKKCGEEGCKFCLPIRLPKDIFDELKFIPDPMLSTDLEHYKDFDDLYGT---ETKEFLPSASESTKEDIPSGIINNSNIRKLINCTICNKPRCIF 230          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: UPI001C16FD5E (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C16FD5E)

HSP 1 Score: 96.3 bits (238), Expect = 2.630e-20
Identity = 53/182 (29.12%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   49 LGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDPVSLVPSQQKNFKDDRWKRSFAKKNVRGVIWCVDCGFPRSIY 588
            L  + R+SV+ V   L +R + +S   +  + +       +  LF+ I  ID T+E++ T+      H    D+++ H C   YSFQ+KKC + +C  C P+R+ KEIF  L F+P+  +    +HY  F+ LY     +    +PS   + K+           VR  ++C  C  PR I+
Sbjct:   28 LAIQLRKSVEEVQSLLKERTIWLSHNEKSFQHHKPAYRMQIDELFEKIYKIDETLELHETSLNALSKHGILQDFIKTHCCIRTYSFQIKKCGKLECNFCLPIRLPKEIFSELHFIPDPIISIDSQHYRDFNDLYGT---ETKEHLPSLSNSSKETIPTGLINNNRVRDFVFCTYCNKPRCIF 206          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A8H3L2B8_9GLOM (Uncharacterized protein n=3 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L2B8_9GLOM)

HSP 1 Score: 92.4 bits (228), Expect = 3.150e-18
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 SSMAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLY 444
            +++  IR V +E +  LG   R S++ V + LS+R  ++    +  + Y+ VS  ++   F+ I  ID T++   T+      H +  ++++ H     YSFQ+KKC   +C  C P+R+ KEIF  L F+P+  L    KHY  F KLY
Sbjct:  771 NTLEEIRSVAQENKK-LGLELRNSIKVVQELLSERTKRLKINKKKFQIYTPVSLINIDETFETIHHIDSTLQQEETSMNSLNKHQELQNFMKSHCQIRTYSFQIKKCGDDECKFCLPIRLPKEIFDELKFIPDPMLSTDLKHYQDFDKLY 919          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: UPI001E1D28F7 (uncharacterized protein LOC123545380 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D28F7)

HSP 1 Score: 87.0 bits (214), Expect = 2.920e-17
Identity = 39/140 (27.86%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 SMAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDCCRPVRMDKEIFQSLDFLPEGELDHTGKHY 423
            SMA +R++  ++ + + T++++S++PV   + +R +++  K E  +    ++  D+  + ++++D+ PT++ +          P++ DW+ RH   S Y FQ+KKC  +DCC P        + + +LP+  LD TG HY
Sbjct:   51 SMAQLREMAAKKSE-VKTQWQESIEPVQSTIRNRFLRLKLKDERFQAVDPMTYEDIDVIKRHLRDLFPTLDTDKLQKVHTSKVPEYADWMSRHCRQSHYIFQIKKCEDADCCIPG-------EDMPWLPDPMLDETGDHY 182          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A8B8BNT9_CRAVI (uncharacterized protein LOC111112012 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BNT9_CRAVI)

HSP 1 Score: 84.7 bits (208), Expect = 1.420e-15
Identity = 54/192 (28.12%), Postives = 89/192 (46.35%), Query Frame = 1
Query:   49 LGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC----CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPD---PVSLVPSQQKNFKDDRWKRSFAKKNVRGVIWCVDCGFPRSIYFDKKI 603
            L   + Q+V   +D L  R  ++ WKGE +      S  +++ L + +K +D  ++ N   +       D   +LE H+ S  Y FQ+KKC   +C      P R+ +++F+SL F+P+   D  G+ Y  F  LY     D   P         + +D ++K       VRG + C +CG  R IY  +K+
Sbjct:  595 LKEEYTQAVGASLDILKQRFKRLRWKGENVCVQEAASPEEMNALVELLKVLDENIQCNANLSNLQSKAID--AFLESHSRSRQYIFQIKKCLADNCGYCVLNPPRLPEDVFRSLHFVPDPTKDENGQ-YKCFKDLYGTETNDKERPSLQGKPVDSSERDKKFKAVLVGTKVRGFVLCTECGKRRVIYAVRKL 783          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: UPI00148A3ECA (uncharacterized protein LOC117689802 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3ECA)

HSP 1 Score: 83.2 bits (204), Expect = 4.890e-15
Identity = 65/213 (30.52%), Postives = 95/213 (44.60%), Query Frame = 1
Query:    1 SSMAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLH---TLFQYIKDIDPTMEVNFTTAKQWEA---HPDWLDWLERHTCSSWYSFQVKKCNQSDC----CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDP--VSLVPSQQKNFKDDRWKRSFAKKNVRGVIWCVDCGFPRSIYFDKKI 603
            S+M A R+ I   Q  +     QSV+PVI N+  R  ++ ++ E +R +    + ++    +L    +DID    V     K   +    P    ++ERHT S  YSFQVKKC   DC      P R+D E F+ L +LP+  L      Y PF ++Y     D    SL  S Q   +D +          R  + C +CG  R IY   K+
Sbjct:  639 STMKA-RRDIALRQGDMKDALIQSVEPVITNVKARFGRLKYQEEGVRIHDAAKDEEIDAICSLIDLFRDIDKPEPVTLNDVKNRNSLKKFPMLQQFVERHTRSRQYSFQVKKCKADDCFFCAINPHRLDDEKFEDLHWLPDPVLSEDAC-YKPFEEVYGTDTKDNDRPSLKDSCQPTERDKKHHGLLNAAAARSFMICYECGKRRVIYCKTKL 849          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A2P4Q7C3_RHIID (Uncharacterized protein n=6 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2P4Q7C3_RHIID)

HSP 1 Score: 79.7 bits (195), Expect = 3.470e-14
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   49 LGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKD-IDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDPVSLVPSQQKNFKDDRWKRS--FAKKNVRGVIWCVDCGFPRSIY 588
            L    + +++     L  R  ++  K +  +     +  +++ LF+ + + ID T+  N T+  +     D   +++ H     YSFQ+KKC +SDC  C PVR+  EIF  L ++P+ ++     HY  F  LY Q   +    +PS++ + +      S       VR  ++C+ C   R ++
Sbjct:   45 LSEELKMAIKNTQKTLETRTERLKLKNQKFKCIEPAALEEINGLFEILGEKIDNTVTQNGTSQNKLRTCVDLQKFIKSHCLIQEYSFQIKKCGESDCLICDPVRLTHEIFNQLHYIPDPQISSNPDHYQDFDSLYGQNTTE--KDIPSKKNHHECKELAPSGILVAARVRDFVFCISCSKLRCLF 227          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A2I1FH25_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1FH25_9GLOM)

HSP 1 Score: 79.3 bits (194), Expect = 9.010e-14
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   49 LGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKD-IDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDPVSLVPSQQKNFKDDRWKRS--FAKKNVRGVIWCVDCGFPRSIY 588
            L    + +++     L  R  ++  K +  +     +  +++ LF+ + + ID T+  N T+  +     D   +++ H     YSFQ+KKC +SDC  C PVR+  EIF  L ++P+ ++     HY  F  LY Q   +    +PS++ + +      S       VR  ++C+ C   R ++
Sbjct:  235 LSEELKMAIKNTQKTLETRTERLKLKNQKFKCIEPAALEEINGLFEILGEKIDNTVTQNGTSQNKLRTCVDLQKFIKSHCLIREYSFQIKKCGESDCLICDPVRLPHEIFNQLHYIPDPQISSNPDHYQDFDSLYGQNTTE--KDIPSKKNHHECKELAPSGILVAARVRDFVFCISCSKLRCLF 417          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: U9SWQ3_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SWQ3_RHIID)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-13
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   49 LGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKD-IDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDC--CRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQPDPVSLVPSQQKNFKDDRWKRS--FAKKNVRGVIWCVDCGFPRSIY 588
            L    + +++     L  R  ++  K +  +     +  +++ LF+ + + ID T+  N T+  +     D   +++ H     YSFQ+KKC +SDC  C PVR+  EIF  L ++P+ ++     HY  F  LY Q   +    +PS++ + +      S       VR  ++C+ C   R ++
Sbjct:  612 LSEELKMAIKNTQKTLKIRTERLKLKNQKFKCIEPAALEEINGLFEILGEKIDNTVTQNGTSQNKLRTCVDLQKFIKSHCLIQEYSFQIKKCGESDCLICDPVRLTHEIFNQLHYIPDPQISSNPDHYQDFDSLYGQNTTE--KDIPSKKNHHECKELAPSGILVAARVRDFVFCISCSKLRCLF 794          
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Match: A0A6J8CXL1_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CXL1_MYTCO)

HSP 1 Score: 76.6 bits (187), Expect = 4.040e-13
Identity = 39/170 (22.94%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    4 SMAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNVSEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSFQVKKCNQSDCCRPVRMDKEIFQSLDFLPEGELDHTGK-HYLPFSKLYRQPQPDPVSLVPSQQKNFKDDR 510
            SMA++R + E++QD +  ++ + ++PV   + +R +++S K +PM+    ++  ++  + +++++  P + +        +    ++ W+E+H+    Y+FQ++KC+ ++CC P  + +E   +L +LP+  ++ T + HYL + ++  Q   +    +  Q+K+ K D+
Sbjct:   82 SMASLRTLCEKKQD-IKQKWIELIEPVQSTVRNRFLRLSLKEKPMQAIDPIAIDEIDIIQRHLREHFPDLNLQKLQKVHTKKCQSYIQWIEKHSRQRHYTFQLRKCDDANCCIPSTLGRE---NLMWLPDPVVNTTDQDHYLQYEEVKHQETEEDRPSMKIQKKSKKTDQ 247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1147.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I1H447_9GLOM3.340e-2129.29Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
UPI001C16FD5E2.630e-2029.12Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A8H3L2B8_9GLOM3.150e-1832.67Uncharacterized protein n=3 Tax=Rhizophagus clarus... [more]
UPI001E1D28F72.920e-1727.86uncharacterized protein LOC123545380 n=1 Tax=Merce... [more]
A0A8B8BNT9_CRAVI1.420e-1528.13uncharacterized protein LOC111112012 n=1 Tax=Crass... [more]
UPI00148A3ECA4.890e-1530.52uncharacterized protein LOC117689802 n=1 Tax=Crass... [more]
A0A2P4Q7C3_RHIID3.470e-1424.86Uncharacterized protein n=6 Tax=Rhizophagus irregu... [more]
A0A2I1FH25_9GLOM9.010e-1424.86Uncharacterized protein (Fragment) n=1 Tax=Rhizoph... [more]
U9SWQ3_RHIID1.400e-1324.86Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A6J8CXL1_MYTCO4.040e-1322.94Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1147contigH-akashiwo_Contig1147:245632..246234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog588596.U9UYI2
Model size603
Max annot lvl588596.U9UYI2|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.96e-20
EggNOG OGs28PCW@1|root,2QW0B@2759|Eukaryota,392K1@33154|Opisthokonta
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.404508-CDS-H-akashiwo_Contig1147:245631..2462281681387097.404508-CDS-H-akashiwo_Contig1147:245631..246228Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1147 245632..246228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.4157763-UTR-H-akashiwo_Contig1147:246228..2462341681387097.4157763-UTR-H-akashiwo_Contig1147:246228..246234Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1147 246229..246234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1147.3.1prot_H-akashiwo_Contig1147.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1147 245632..246228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1147.3.1

>prot_H-akashiwo_Contig1147.3.1 ID=prot_H-akashiwo_Contig1147.3.1|Name=mRNA_H-akashiwo_Contig1147.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=199bp
MAAIRKVIEEEQDGLGTRFRQSVQPVIDNLSDRAMKISWKGEPMRKYSNV
SEGDLHTLFQYIKDIDPTMEVNFTTAKQWEAHPDWLDWLERHTCSSWYSF
QVKKCNQSDCCRPVRMDKEIFQSLDFLPEGELDHTGKHYLPFSKLYRQPQ
PDPVSLVPSQQKNFKDDRWKRSFAKKNVRGVIWCVDCGFPRSIYFDKKI
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mRNA from alignment at H-akashiwo_Contig1147:245632..246234-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1147.3.1 ID=mRNA_H-akashiwo_Contig1147.3.1|Name=mRNA_H-akashiwo_Contig1147.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=603bp|location=Sequence derived from alignment at H-akashiwo_Contig1147:245632..246234- (Heterosigma akashiwo CCMP452)
TCATCAATGGCAGCTATTAGAAAGGTGATTGAGGAAGAGCAAGATGGGCT TGGCACTCGATTCCGTCAGTCGGTGCAGCCAGTTATTGACAATCTCTCTG ATCGCGCTATGAAGATTTCCTGGAAAGGAGAGCCGATGAGGAAATACTCA AATGTCTCCGAGGGTGACTTGCATACATTATTTCAGTACATCAAAGACAT CGATCCCACCATGGAGGTGAATTTCACTACAGCCAAGCAGTGGGAGGCTC ACCCTGACTGGCTGGACTGGCTGGAGAGGCATACTTGCTCCTCCTGGTAT TCATTTCAAGTAAAAAAGTGCAACCAGTCTGACTGCTGCAGACCAGTCCG TATGGACAAGGAAATCTTTCAGTCACTTGATTTCCTCCCAGAGGGGGAGC TTGACCACACAGGTAAGCATTACCTGCCCTTCAGCAAGTTGTACAGACAG CCGCAGCCAGATCCAGTATCTCTTGTGCCATCGCAGCAAAAAAACTTCAA AGATGACCGTTGGAAAAGGAGTTTTGCAAAAAAGAATGTCCGAGGTGTGA TTTGGTGTGTAGATTGTGGCTTCCCACGCTCTATCTATTTTGATAAAAAG ATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1147:245632..246234-

>mRNA_H-akashiwo_Contig1147.3.1 ID=mRNA_H-akashiwo_Contig1147.3.1|Name=mRNA_H-akashiwo_Contig1147.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=597bp|location=Sequence derived from alignment at H-akashiwo_Contig1147:245632..246234- (Heterosigma akashiwo CCMP452)
ATGGCAGCTATTAGAAAGGTGATTGAGGAAGAGCAAGATGGGCTTGGCAC
TCGATTCCGTCAGTCGGTGCAGCCAGTTATTGACAATCTCTCTGATCGCG
CTATGAAGATTTCCTGGAAAGGAGAGCCGATGAGGAAATACTCAAATGTC
TCCGAGGGTGACTTGCATACATTATTTCAGTACATCAAAGACATCGATCC
CACCATGGAGGTGAATTTCACTACAGCCAAGCAGTGGGAGGCTCACCCTG
ACTGGCTGGACTGGCTGGAGAGGCATACTTGCTCCTCCTGGTATTCATTT
CAAGTAAAAAAGTGCAACCAGTCTGACTGCTGCAGACCAGTCCGTATGGA
CAAGGAAATCTTTCAGTCACTTGATTTCCTCCCAGAGGGGGAGCTTGACC
ACACAGGTAAGCATTACCTGCCCTTCAGCAAGTTGTACAGACAGCCGCAG
CCAGATCCAGTATCTCTTGTGCCATCGCAGCAAAAAAACTTCAAAGATGA
CCGTTGGAAAAGGAGTTTTGCAAAAAAGAATGTCCGAGGTGTGATTTGGT
GTGTAGATTGTGGCTTCCCACGCTCTATCTATTTTGATAAAAAGATT
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