mRNA_H-akashiwo_Contig1147.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1147.2.1
Unique NamemRNA_H-akashiwo_Contig1147.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1147.2.1 vs. uniprot
Match: A0A7S3XSQ7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ7_HETAK)

HSP 1 Score: 111 bits (277), Expect = 1.490e-29
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 LLAQALLAEVAVHLKEMGNVLIHSAGKFLKGQAFAIGRAISFQSQKSMDDDNRAQNDANG 180
            LLAQALLAEVA HLKEMGNVLIHSAGKFLKGQAFAIGRAISFQSQKSMDDDNRAQNDANG
Sbjct:  112 LLAQALLAEVAGHLKEMGNVLIHSAGKFLKGQAFAIGRAISFQSQKSMDDDNRAQNDANG 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XSQ7_HETAK1.490e-2998.33Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1147contigH-akashiwo_Contig1147:185847..188265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons3
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.3106003-CDS-H-akashiwo_Contig1147:185847..1858981681387097.3106003-CDS-H-akashiwo_Contig1147:185847..185898Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1147 185848..185898 -
1681387097.3189383-CDS-H-akashiwo_Contig1147:187314..1873981681387097.3189383-CDS-H-akashiwo_Contig1147:187314..187398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1147 187315..187398 -
1681387097.3278353-CDS-H-akashiwo_Contig1147:188220..1882651681387097.3278353-CDS-H-akashiwo_Contig1147:188220..188265Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1147 188221..188265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1147.2.1prot_H-akashiwo_Contig1147.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1147 185848..188265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1147.2.1

>prot_H-akashiwo_Contig1147.2.1 ID=prot_H-akashiwo_Contig1147.2.1|Name=mRNA_H-akashiwo_Contig1147.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
LLAQALLAEVAVHLKEMGNVLIHSAGKFLKGQAFAIGRAISFQSQKSMDD
DNRAQNDANG
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mRNA from alignment at H-akashiwo_Contig1147:185847..188265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1147.2.1 ID=mRNA_H-akashiwo_Contig1147.2.1|Name=mRNA_H-akashiwo_Contig1147.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2419bp|location=Sequence derived from alignment at H-akashiwo_Contig1147:185847..188265- (Heterosigma akashiwo CCMP452)
CTCCTGGCCCAGGCCCTGCTCGCGGAGGTTGCCGTTCACCTGAAGGTTCG
GGGAAACGTGTTTTTGTTGTAGGGGTTCTTCTTTCTAGATCCAGTAACTC
AGACTCTCTTGGCAATTTCTTGAGATATCCCACTGACGCCTATTTACAGT
CATTGAGGAGTGCGACAAGGCCCGGCAATGTTAGTCGTTCAAGTGTGCAG
CATGAAAGGGCTGCTAGTGCAAAAAATAACTACTTGTCCCGGATGCATGG
GTTAAGTTACCCAGGTGGAGTTTACCATGCTGGGATGAGGAGAAGGACTT
GGCCAATGATACCAACTTCTGATTGAGCAAAAGGCTGTTCATCTTTTGGC
AGATGGCAGACACAAGATGAGGACCTTGGGTCAGCTGCTGGCTGTGAATG
TTCTTGAAGTTGAGTCAGCCTTGGTGCCAGTAGAAGATGCTGGAGTGAAT
ATTGAATGTCGATGAAAAGTTGAAATGTGCCCAAGCCAATGCAAGCTTGA
CCTGAACCAACTTCAACGACGACACATGTATTCCTCCATATCATTACCTT
AATAATAAATAATATATATCGCTACATTTGTATACATGCATTGTGCATAT
GTAATCAATATGATTTCATTTGTATATGCTAATATTATGGATGATAACAA
AATCGAAAGTTCCCGAAGTAATTCCAAAATAAGCGGAAAGCCGCCATAAA
TAGGTAAGATAATGCACACCATAGCACTCTTGATAACGATGCATCTTTTT
TCTTATATCAGGACAATTCCTAAAAAGTCGGTGGTCCAAGCATGTATTTC
GGGAACGGCGATTTCACTCTTGTCTGTAGACTTGTCTCTTTTTTGTTGTT
GCACATTGTATGTTCAGGAAATGGGAAATGTCTTGATTCATTCTGCTGGG
AAATTCCTGAAGGGGCAGGCATTTGCAATCGGTCGGGCTATCAGCTTTCA
GGTAAAGCATCATTGAATATAGTTTATTCAAATTATTGAATTTATTTTTT
TGTTTTATTTTTCTACGTTTCTACTTGCAGTGTGCCCCTTCACATCCTGA
GCCACACAACCGCCGTCTATCTGCAGGCTGCCTTGATATCTGAGCACTTC
GTCGGACTAAGTCTGGCTATACTGACTTTCTTGGAAGTTCTAGCTGCCCT
TAAGCCTACATGCTCTATTACCCTTTGGCCTCATCGCCCTCTTTCAGTTG
TCTCTACTGTAGGCGCTTCTTCCGACAACTCACATCCATTGACGAGTGCA
TCTTCTCCTTCCCGCAGGTCGGGATGGTATCACCAAGACTGGCGCAGTCC
ACCCCTGGTTTCGCAGCACGAGTGCTGCTTCCTAGCCCGTTTTCCTGATT
TGTACAAGATACGGAAGTAACTTCCACAAACCGGCCTCACGAACAGTAGG
TTATGCTCATGTTTCAATAACCGCCACTTTTTTTTTCCTACGTTTGTTCA
GGCGATGCCCCCTCCAGCACCCCGGCAGGCTTCTCACTCCAATGTCGCCT
GATGCCATGATCTCTGACAACTTCATCGGAACGAGTATCTTTTGACATTG
CTGACGATTGCTGAACCTCCAGTCTCTTTTATGGACTGCATTTCGAAGCG
CCTTGATCCGTTTGGCACCATCTTCCGTTCCCGCTCTTCAGGCCTCATCG
TAATGGCTCTTGCATCTTGGCCCCTCAATTTCGATGGTTGGCGTCTGCTC
CTTCATGCCGGTGTGTCCAGGAAGTTCGGCTCCCAGCCTACATCTCCCTG
TGCTCGCTACATAAATGTAGCTCCTAAGTCAGTTTTTCAGCTTGCGGAAG
TTAACTTCCTCAGACCGGCCTACTGAACGACTGGTGGCGCTCAGTTTTCA
ACGTCGTGACAAGTCCCGACGTCTACAGCGATCGCGAAGGCCATTCTTGC
GTGGATCATCGATCGTCTACAGCTAACGCAAGGACATTCCGCGCAGCCCC
CAGGGAATATTCTGATGAACTCTCACAAGCTCCGAAGAACTTTCCAGTCC
CTAGATTTTTCACTGAGTAAGCGCCCGCCAGCGATAGACCTCGTTTAACA
ATACAGAGATCACCTAAATGCCAAACTTCGCAAATTGCCCGAAGGCGGAG
CTAAAGCCTGGGATTTGAACCGGTGAACAAGCTGAAGAAGCAGGCAGCAA
GGAGAGAGGCCGTTGTACTGCTGTTGTGGCTAGTTTTTCTTATCTGGTGC
TTGGGCAATGTGAGGCCATACTCACTGATGATGGAGGCGGCTTAACTGTT
AAACCCAATACCTTTTTCTCAAACTTCTCACTAACTTGGAAAATTCATCA
TACATCATCATATCTTGTTCTTCCTCTGTACTATCACTATGAAATGACAT
AATAATATTATATACAGTCTCAGAAATCAATGGATGATGACAACAGGGCG
CAGAATGATGCTAACGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1147:185847..188265-

>mRNA_H-akashiwo_Contig1147.2.1 ID=mRNA_H-akashiwo_Contig1147.2.1|Name=mRNA_H-akashiwo_Contig1147.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig1147:185847..188265- (Heterosigma akashiwo CCMP452)
CTCCTGGCCCAGGCCCTGCTCGCGGAGGTTGCCGTTCACCTGAAGGAAAT
GGGAAATGTCTTGATTCATTCTGCTGGGAAATTCCTGAAGGGGCAGGCAT
TTGCAATCGGTCGGGCTATCAGCTTTCAGTCTCAGAAATCAATGGATGAT
GACAACAGGGCGCAGAATGATGCTAACGGA
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