mRNA_H-akashiwo_Contig1146.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1146.8.1
Unique NamemRNA_H-akashiwo_Contig1146.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1146.8.1 vs. uniprot
Match: A0A6V1U1H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1H3_HETAK)

HSP 1 Score: 115 bits (288), Expect = 5.790e-31
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MNTQQLQQHYVQPTGGYSMIWQQQQSADPRLAAGQQLVPGSSMFQATAGRAQVSAVMPSP 180
            MNTQQLQQHYVQPTGGYS+IWQQQQSADPRLAAGQQLVPGSSMFQATAGRAQVSAVMPSP
Sbjct:  103 MNTQQLQQHYVQPTGGYSVIWQQQQSADPRLAAGQQLVPGSSMFQATAGRAQVSAVMPSP 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1146.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1U1H3_HETAK5.790e-3198.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1146contigH-akashiwo_Contig1146:297218..297808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size182
Hectar predicted targeting categoryother localisation
Exons3
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387096.9682083-CDS-H-akashiwo_Contig1146:297217..2972991681387096.9682083-CDS-H-akashiwo_Contig1146:297217..297299Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 297218..297299 +
1681387096.978578-CDS-H-akashiwo_Contig1146:297491..2975651681387096.978578-CDS-H-akashiwo_Contig1146:297491..297565Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 297492..297565 +
1681387096.9906778-CDS-H-akashiwo_Contig1146:297784..2978081681387096.9906778-CDS-H-akashiwo_Contig1146:297784..297808Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 297785..297808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1146.8.1prot_H-akashiwo_Contig1146.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1146 297218..297808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1146.8.1

>prot_H-akashiwo_Contig1146.8.1 ID=prot_H-akashiwo_Contig1146.8.1|Name=mRNA_H-akashiwo_Contig1146.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
MNTQQLQQHYVQPTGGYSMIWQQQQSADPRLAAGQQLVPGSSMFQATAGR
AQVSAVMPSP
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mRNA from alignment at H-akashiwo_Contig1146:297218..297808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1146.8.1 ID=mRNA_H-akashiwo_Contig1146.8.1|Name=mRNA_H-akashiwo_Contig1146.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=591bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:297218..297808+ (Heterosigma akashiwo CCMP452)
ATGAATACCCAGCAACTCCAGCAGCACTATGTTCAGCCAACCGGGGGTTA
TAGTATGATATGGCAACAGCAACAGTCAGCAGGTGCTTTTTAGTCAAATA
ATATCATTTTTTGCAAAAAAAAAAAAAACAAGCAAGCATCAAGGTTTTAT
GCACTTCATTTGCCTGGCCTCACTACTACAACAACATGTATATATATTCT
TATGTCATTATACATAACACATTCAAATATATTCCTATCTTTCCCCCCCC
CCCTGTTTATGACTTTTGAGCCAGACCCTCGGCTAGCTGCAGGGCAGCAA
CTGGTACCTGGAAGTTCAATGTTCCAGGCCACTGCGGGCAGAGCGCAGGT
GCAGCTTTTTGGTGATATTTAATTGAGCAGTGGGAGAGGGGTGTATTTGT
TCTTTCTATAACTGGGAAACCTCTCCACTTGTCCCACCAAAAACCTATTC
TTTGTTACTAAGATTCATCTGAGCACGTAGATACCGTCAGAGAACATATG
TTCTAGTAAAACCTTTCAAATTTAACAAAATGAATTAAAGAAAAATCCTT
TTATTATTTTGGCTCAGGTCTCTGCGGTGATGCCAAGTCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1146:297218..297808+

>mRNA_H-akashiwo_Contig1146.8.1 ID=mRNA_H-akashiwo_Contig1146.8.1|Name=mRNA_H-akashiwo_Contig1146.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:297218..297808+ (Heterosigma akashiwo CCMP452)
ATGAATACCCAGCAACTCCAGCAGCACTATGTTCAGCCAACCGGGGGTTA
TAGTATGATATGGCAACAGCAACAGTCAGCAGACCCTCGGCTAGCTGCAG
GGCAGCAACTGGTACCTGGAAGTTCAATGTTCCAGGCCACTGCGGGCAGA
GCGCAGGTCTCTGCGGTGATGCCAAGTCCC
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