mRNA_H-akashiwo_Contig1146.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1146.4.1
Unique NamemRNA_H-akashiwo_Contig1146.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S3Y2A3_HETAK (Amine oxidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2A3_HETAK)

HSP 1 Score: 258 bits (659), Expect = 6.350e-81
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA
Sbjct:  427 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 555          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7R9ZLV7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLV7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.780e-69
Identity = 107/129 (82.95%), Postives = 114/129 (88.37%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            E SMLELVFAPCSP+AG  VNWI K+DEEIIDATMGEL RLFP EIAADEKWP+T  Q PQGQARL+KF+VVKVPRSVYAA+PGRNKYRPSQ +PI  LTM GDWTSQKFLGSMEGAV  GKLAAEVVA
Sbjct:   11 EASMLELVFAPCSPIAGSKVNWISKSDEEIIDATMGELARLFPTEIAADEKWPATKNQGPQGQARLRKFAVVKVPRSVYAAVPGRNKYRPSQNTPIEGLTMAGDWTSQKFLGSMEGAVFAGKLAAEVVA 139          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S4JGJ6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JGJ6_9EUKA)

HSP 1 Score: 216 bits (549), Expect = 1.360e-68
Identity = 104/128 (81.25%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVV 384
            ++SM+ELVFAPCSPLAGGNVNWI KTDEEIIDATMGEL RLFP EIA DE+WP+T KQ P GQA+L K++VVKVPRSVYAAIPGRNKYRPSQE+PI N+ + GDWTSQK+LGSMEGA+LGGKLAAEVV
Sbjct:   50 DKSMVELVFAPCSPLAGGNVNWIAKTDEEIIDATMGELARLFPTEIANDERWPTTSKQGPSGQAKLVKYAVVKVPRSVYAAIPGRNKYRPSQETPIENMVLAGDWTSQKYLGSMEGAILGGKLAAEVV 177          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S2N1M6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N1M6_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 2.030e-68
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVV 384
            E SMLELVFAPCSPLAGGNVNWI K+D+EIIDATMGEL RLFP EIA D KWP+T  Q+PQGQARL+KF+VVKVPRSVYAAIPGRNKYRPSQESPI NL + GDWTSQK+LGSMEGAVLGGKLAAEVV
Sbjct:  221 EASMLELVFAPCSPLAGGNVNWIAKSDDEIIDATMGELARLFPTEIANDPKWPATSSQSPQGQARLRKFAVVKVPRSVYAAIPGRNKYRPSQESPIDNLVLAGDWTSQKYLGSMEGAVLGGKLAAEVV 348          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S3EY52_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EY52_9EUKA)

HSP 1 Score: 221 bits (564), Expect = 4.180e-68
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVV 384
            E SMLELVFAPCSPLAGGNVNWI KTD+EIIDATMGEL RLFP EIA D +WP+T +Q P GQA+L+KF+VVKVPRSVYAAIPGRNKYRPSQESPIPNL M GDWTSQKFLGSMEGAVLGGKLAAEV+
Sbjct:  277 EASMLELVFAPCSPLAGGNVNWIAKTDDEIIDATMGELARLFPTEIANDPRWPATGQQGPAGQAKLRKFAVVKVPRSVYAAIPGRNKYRPSQESPIPNLVMAGDWTSQKFLGSMEGAVLGGKLAAEVI 404          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S3L6Y1_9STRA (Amine oxidase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6Y1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.870e-68
Identity = 111/129 (86.05%), Postives = 117/129 (90.70%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            E SMLELVFAPCSPLAGGNVNWI KTDEEIIDATMGEL RLFP EIAAD KWP T KQ PQGQARL+K++VVKVPRSVYAAIPGRNKYRPSQ +PI N TMGGDWT+QK+LGSMEGAV GGKLAAEVVA
Sbjct:  415 EASMLELVFAPCSPLAGGNVNWISKTDEEIIDATMGELARLFPTEIAADPKWPCTSKQGPQGQARLRKYAVVKVPRSVYAAIPGRNKYRPSQRTPIENFTMGGDWTNQKYLGSMEGAVYGGKLAAEVVA 543          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A448ZRJ8_9STRA (Amine oxidase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZRJ8_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.810e-68
Identity = 110/129 (85.27%), Postives = 116/129 (89.92%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            + SMLELVFAPCSP+AGGN NWI KTDE+IIDATMGEL RLFP EIAAD KWPST  Q P GQARL+K+SVVKVPRSVYAAIPGRNKYRP Q SPIPNLTM GDWTSQKFLGSMEGAVLGGKLAAE+VA
Sbjct:  419 DASMLELVFAPCSPIAGGNTNWISKTDEQIIDATMGELARLFPTEIAADXKWPSTKNQGPNGQARLRKYSVVKVPRSVYAAIPGRNKYRPGQRSPIPNLTMAGDWTSQKFLGSMEGAVLGGKLAAEIVA 547          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S2JTN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTN4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.040e-67
Identity = 108/130 (83.08%), Postives = 115/130 (88.46%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTP-QGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            + SMLELVFAPCSPLAGGN NWI K+DEEIIDATMGEL RLFP EIA DE WP+T KQ    GQARL+K++VVKVPRSVYAAIPGRNKYRPSQ SPIPN T+ GDWTSQKFLGSMEGAVLGGKLAAEVVA
Sbjct:   96 DASMLELVFAPCSPLAGGNTNWIAKSDEEIIDATMGELARLFPTEIAYDETWPATKKQEGVDGQARLRKYAVVKVPRSVYAAIPGRNKYRPSQTSPIPNFTLAGDWTSQKFLGSMEGAVLGGKLAAEVVA 225          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A0M0JCI3_9EUKA (Amine oxidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCI3_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 9.590e-67
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVVA 387
            E+SMLELVFAPCSPLAGGN+NWI K+DEEIIDATMGEL RLFPLEIA D ++P+T KQ PQGQA+L+K++VVKVPRSVYAAIPGRNKYRPSQE+PIPNL + GDWTSQK+LGSMEGA+LGGKLAAEVVA
Sbjct:  413 EKSMLELVFAPCSPLAGGNINWIAKSDEEIIDATMGELARLFPLEIANDPRYPATSKQGPQGQAKLRKYAVVKVPRSVYAAIPGRNKYRPSQETPIPNLVLAGDWTSQKYLGSMEGAILGGKLAAEVVA 541          
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Match: A0A7S2N1M7_9EUKA (Amine oxidase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N1M7_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 1.700e-66
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 EESMLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWPSTVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGGDWTSQKFLGSMEGAVLGGKLAAEVV 384
            E SMLELVFAPCSPLAGGNVNWI K+D+EIIDATMGEL RLFP EIA D KWP+T  Q+PQGQARL+KF+VVKVPRSVYAAIPGRNKYRPSQESPI NL + GDWTSQK+LGSMEGAVLGGKLAAEVV
Sbjct:  421 EASMLELVFAPCSPLAGGNVNWIAKSDDEIIDATMGELARLFPTEIANDPKWPATSSQSPQGQARLRKFAVVKVPRSVYAAIPGRNKYRPSQESPIDNLVLAGDWTSQKYLGSMEGAVLGGKLAAEVV 548          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1146.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y2A3_HETAK6.350e-81100.00Amine oxidase n=1 Tax=Heterosigma akashiwo TaxID=2... [more]
A0A7R9ZLV7_9STRA1.780e-6982.95Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4JGJ6_9EUKA1.360e-6881.25Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2N1M6_9EUKA2.030e-6885.16Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3EY52_9EUKA4.180e-6885.16Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3L6Y1_9STRA4.870e-6886.05Amine oxidase (Fragment) n=1 Tax=Amphora coffeifor... [more]
A0A448ZRJ8_9STRA5.810e-6885.27Amine oxidase n=2 Tax=Pseudo-nitzschia TaxID=41953... [more]
A0A7S2JTN4_9STRA3.040e-6783.08Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A0M0JCI3_9EUKA9.590e-6782.95Amine oxidase n=1 Tax=Chrysochromulina tobinii Tax... [more]
A0A7S2N1M7_9EUKA1.700e-6685.16Amine oxidase n=1 Tax=Haptolina brevifila TaxID=15... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1146contigH-akashiwo_Contig1146:147380..147766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr35509
PFAMsAmino_oxidase
Model size387
Max annot lvl2836|Bacillariophyta
KEGG rclassRC01214,RC01958,RC03092,RC03093
KEGG koko:K02293
KEGG ReactionR04786,R04787,R07510,R09652,R09653,R09654
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.38e-64
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota,2XB2W@2836|Bacillariophyta
EC1.3.5.5
DescriptionFlavin containing amine oxidoreductase
Cds size378
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.218069-CDS-H-akashiwo_Contig1146:147379..1477571681387097.218069-CDS-H-akashiwo_Contig1146:147379..147757Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1146 147380..147757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.2288089-UTR-H-akashiwo_Contig1146:147757..1477661681387097.2288089-UTR-H-akashiwo_Contig1146:147757..147766Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1146 147758..147766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1146.4.1prot_H-akashiwo_Contig1146.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1146 147380..147757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1146.4.1

>prot_H-akashiwo_Contig1146.4.1 ID=prot_H-akashiwo_Contig1146.4.1|Name=mRNA_H-akashiwo_Contig1146.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=126bp
MLELVFAPCSPLAGGNVNWIKKTDEEIIDATMGELCRLFPLEIAADEKWP
STVKQTPQGQARLKKFSVVKVPRSVYAAIPGRNKYRPSQESPIPNLTMGG
DWTSQKFLGSMEGAVLGGKLAAEVVA
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mRNA from alignment at H-akashiwo_Contig1146:147380..147766-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1146.4.1 ID=mRNA_H-akashiwo_Contig1146.4.1|Name=mRNA_H-akashiwo_Contig1146.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:147380..147766- (Heterosigma akashiwo CCMP452)
GAGGAGAGCATGCTCGAGCTGGTCTTCGCGCCCTGCTCCCCGCTGGCCGG CGGCAACGTGAACTGGATCAAGAAGACGGACGAGGAGATCATCGACGCGA CCATGGGCGAGCTGTGCCGGCTGTTCCCGCTGGAGATCGCCGCGGACGAG AAGTGGCCGAGCACCGTGAAGCAGACCCCACAGGGGCAGGCGCGCCTGAA GAAGTTCTCCGTGGTGAAGGTGCCCCGCAGCGTGTACGCGGCCATTCCGG GCCGGAACAAGTACCGCCCCAGCCAGGAGTCGCCCATCCCCAACCTGACC ATGGGCGGCGACTGGACCAGCCAGAAGTTCCTGGGCAGCATGGAAGGCGC GGTGCTGGGCGGCAAGCTGGCGGCGGAGGTGGTGGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1146:147380..147766-

>mRNA_H-akashiwo_Contig1146.4.1 ID=mRNA_H-akashiwo_Contig1146.4.1|Name=mRNA_H-akashiwo_Contig1146.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=378bp|location=Sequence derived from alignment at H-akashiwo_Contig1146:147380..147766- (Heterosigma akashiwo CCMP452)
ATGCTCGAGCTGGTCTTCGCGCCCTGCTCCCCGCTGGCCGGCGGCAACGT
GAACTGGATCAAGAAGACGGACGAGGAGATCATCGACGCGACCATGGGCG
AGCTGTGCCGGCTGTTCCCGCTGGAGATCGCCGCGGACGAGAAGTGGCCG
AGCACCGTGAAGCAGACCCCACAGGGGCAGGCGCGCCTGAAGAAGTTCTC
CGTGGTGAAGGTGCCCCGCAGCGTGTACGCGGCCATTCCGGGCCGGAACA
AGTACCGCCCCAGCCAGGAGTCGCCCATCCCCAACCTGACCATGGGCGGC
GACTGGACCAGCCAGAAGTTCCTGGGCAGCATGGAAGGCGCGGTGCTGGG
CGGCAAGCTGGCGGCGGAGGTGGTGGCG
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