mRNA_H-akashiwo_Contig1145.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1145.8.1
Unique NamemRNA_H-akashiwo_Contig1145.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S3XLC0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC0_HETAK)

HSP 1 Score: 230 bits (587), Expect = 7.420e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKFV 369
            PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKFV
Sbjct:  188 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKFV 297          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S3QJ82_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ82_9STRA)

HSP 1 Score: 171 bits (433), Expect = 5.640e-50
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            PIVR +L  NFP+TFDS AKAR+PA+LLGGLFACYLT PFDT+KTCMQGDIER KF  F  SA  V  E G T FYRGATFRYGRM IAVGMMDFLQS IGP++YP KF
Sbjct:  159 PIVRSNLMENFPETFDSQAKARIPAALLGGLFACYLTQPFDTIKTCMQGDIEREKFKGFRHSASVVYGESGFTGFYRGATFRYGRMVIAVGMMDFLQSQIGPLLYPSKF 267          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S1ZBJ0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBJ0_TRICV)

HSP 1 Score: 163 bits (413), Expect = 5.950e-47
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            PIVR +L  N+P+TFDS  KARVPA+LLGGLFACYLTHPFDTVKTCMQGDIER  F  F +++K + KE G  AFYRGATFRYGRM  AV +MD+LQ+ IGP++YP KF
Sbjct:  159 PIVRRTLMENYPETFDSQQKARVPAALLGGLFACYLTHPFDTVKTCMQGDIERKTFGSFTETSKALYKESGFPAFYRGATFRYGRMVCAVALMDYLQAMIGPLLYPAKF 267          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S4HPD5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPD5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.270e-44
Identity = 76/109 (69.72%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            PIVR +L   +P+TFD++AKARVPASLLGGLFACYLT P DTVKTCMQGDIER  F  F ++AK + KE G   FYRGATFRYGRM  AV MMD LQ+ IGPM+YP KF
Sbjct:  159 PIVRRNLMEMYPETFDTEAKARVPASLLGGLFACYLTQPADTVKTCMQGDIERKTFGSFTETAKVLYKESGIPGFYRGATFRYGRMVCAVFMMDTLQAMIGPMLYPAKF 267          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A6U5F8K7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5F8K7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.040e-44
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            PI+R  L T +P+ FDS  KARVPA+LLGGLF CYLTHPFDTVKTCMQGDIERT +  F D+AK +  E     FYRGATFRYGRM  AV MMD LQ+NIGP++YP  F
Sbjct:  159 PIIRRELMTRYPERFDSVNKARVPAALLGGLFGCYLTHPFDTVKTCMQGDIERTTYGTFTDTAKKIYTESSIAGFYRGATFRYGRMVCAVFMMDVLQANIGPLLYPKAF 267          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S4T3Z5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T3Z5_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.310e-43
Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNI 339
            PIVR +L   +P+TFDSD KARVPA+LLGGLFACYLTHPFDT+KTCMQGDIER  F    D+AK + KEG   AFYRGATFRYGRM IAVGM+DFLQ +I
Sbjct:  159 PIVRTTLREQYPETFDSDQKARVPAALLGGLFACYLTHPFDTIKTCMQGDIERKTFGTLTDTAKILFKEGSIPAFYRGATFRYGRMVIAVGMLDFLQVSI 258          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S2LBN4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LBN4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.620e-42
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            PIVR +L   +PD FD+D KARVPA+LLGGLFACYLT PFDTVKTCMQGDIER  F  F  +AK +  E G TAFYRGATFRYGRM  AV MMD+LQ+ +GP++YP  F
Sbjct:  158 PIVRRNLREMYPDKFDTDNKARVPAALLGGLFACYLTQPFDTVKTCMQGDIERKTFGTFTQTAKKI-SEDGFTAFYRGATFRYGRMVCAVFMMDYLQAAVGPLLYPSAF 265          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S2P3K1_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2P3K1_BIGNA)

HSP 1 Score: 146 bits (369), Expect = 5.090e-42
Identity = 68/106 (64.15%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYP 357
            PIVR  + T  P+TF+SD KAR+PASL G LFACYLT PFDT+KTCMQGD+ER  F  F  + K + KEGG TAFYRGATFRYGRM  AV M+D L++ +GP+M+P
Sbjct:   24 PIVRNFMRTKMPETFNSDDKARIPASLTGALFACYLTQPFDTIKTCMQGDVERKTFGTFTQTFKALHKEGGITAFYRGATFRYGRMVCAVFMLDKLRATLGPIMFP 129          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A7S0BVL9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVL9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.260e-41
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   64 TNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            T FPD FDS AKAR+PA+LLGGLFACYLT PFDTVKTCMQGDIER  +  F ++AK +  E G +AFYRGATFRY RMC A+ MMD LQ  +GP ++P+ F
Sbjct:    2 TRFPDKFDSAAKARIPAALLGGLFACYLTQPFDTVKTCMQGDIERKTYGTFSETAKMLHSEAGISAFYRGATFRYARMCCAIFMMDTLQGLVGPALFPNAF 102          
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Match: A0A448YYZ2_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YYZ2_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.510e-41
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   40 PIVRESLTTNFPDTFDSDAKARVPASLLGGLFACYLTHPFDTVKTCMQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFLQSNIGPMMYPHKF 366
            P+VR +L   +P TFD++ KAR+PA+LLGGLF CY+THPFDT+KTCMQGDIER  +  F+D+AK++  E G T FYRGATFRYGRM  AV +MD L+  IG +MYP  F
Sbjct:  160 PVVRRTLMDXYPTTFDTNDKARIPAALLGGLFGCYMTHPFDTIKTCMQGDIERKVYGNFIDTAKSINAESGFTGFYRGATFRYGRMVCAVFIMDLLREKIGRLMYPSAF 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1145.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XLC0_HETAK7.420e-73100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3QJ82_9STRA5.640e-5075.23Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ZBJ0_TRICV5.950e-4769.72Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4HPD5_9STRA4.270e-4469.72Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U5F8K7_9STRA6.040e-4466.97Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4T3Z5_9STRA3.310e-4373.00Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2LBN4_9STRA3.620e-4267.89Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2P3K1_BIGNA5.090e-4264.15Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
A0A7S0BVL9_9STRA2.260e-4166.34Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448YYZ2_9STRA4.510e-4161.47Uncharacterized protein n=2 Tax=Pseudo-nitzschia T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1145contigH-akashiwo_Contig1145:330633..331412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_36786
PFAMsMito_carr
Model size552
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.03e-17
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
Cds size195
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387096.740424-UTR-H-akashiwo_Contig1145:330632..3308121681387096.740424-UTR-H-akashiwo_Contig1145:330632..330812Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1145 330633..330812 -
1681387096.771242-UTR-H-akashiwo_Contig1145:331235..3314121681387096.771242-UTR-H-akashiwo_Contig1145:331235..331412Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1145 331236..331412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387096.7512777-CDS-H-akashiwo_Contig1145:330812..3308541681387096.7512777-CDS-H-akashiwo_Contig1145:330812..330854Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1145 330813..330854 -
1681387096.7612705-CDS-H-akashiwo_Contig1145:331082..3312351681387096.7612705-CDS-H-akashiwo_Contig1145:331082..331235Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1145 331083..331235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1145.8.1prot_H-akashiwo_Contig1145.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1145 330813..331235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1145.8.1

>prot_H-akashiwo_Contig1145.8.1 ID=prot_H-akashiwo_Contig1145.8.1|Name=mRNA_H-akashiwo_Contig1145.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
MQGDIERTKFTRFVDSAKTVLKEGGPTAFYRGATFRYGRMCIAVGMMDFL
QSNIGPMMYPHKFV*
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mRNA from alignment at H-akashiwo_Contig1145:330633..331412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1145.8.1 ID=mRNA_H-akashiwo_Contig1145.8.1|Name=mRNA_H-akashiwo_Contig1145.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=780bp|location=Sequence derived from alignment at H-akashiwo_Contig1145:330633..331412- (Heterosigma akashiwo CCMP452)
TTAGAGAGGGCTGTGGACTTGTGGCTACCTCAGCATTCCCCCATTGTTCG AGAATCACTGACCACCAACTTCCCAGACACTTTTGACTCAGATGCCAAGG CCCGTGTTCCTGCTTCCCTCCTGGGCGGGCTTTTTGCCTGCTACTTGACA CATCCTTTTGACACAGTCAAGACTTGCATGCAAGGTGATATTGAACGGAC AAAGTTCACCAGATTTGTTGATTCAGCCAAAACTGTGCTCAAAGAAGGCG GCCCTACAGCATTCTATCGCGGAGCTACCTTTCGGTACGGGAGAATGTGT ATTGCTGTTGGTATGATGGACTTCCTCCAGGTATTATATTTTCCATGCAT GGTGAAGCAATATCATCCCACAAACATCAATAAAGCGAAATATGAATACC CCCCTGCAATCCAGTTGTTATAGATTTTTTCAATGCTTCCGAAACACATA ACACATTGTGTAGAAAAGTTCTAGATATTTGCTGTGTTTTTCTTGTTGGT GTGTGTAAAAGTATGTGTAAGCATTATTTCTACCTGATAACTCCTTACTT TTTTCCAGAGCAACATTGGACCTATGATGTACCCGCACAAGTTTGTTTGA AAGAAATTTTCAAGATTCCAGAACAAAATACATGTATTTTTTCATACATA CAGTAGAGGATAGCCATGCATGTTTGCCAACCATTCTCACTTCTTTTGAA GCGCGTGTTATCAACAGTCCTCTCAAGTGGATTTCCACCTTCATGAAGGA GTAAAAAAGGGAAGAAATGATGGCATGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1145:330633..331412-

>mRNA_H-akashiwo_Contig1145.8.1 ID=mRNA_H-akashiwo_Contig1145.8.1|Name=mRNA_H-akashiwo_Contig1145.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig1145:330633..331412- (Heterosigma akashiwo CCMP452)
ATGCAAGGTGATATTGAACGGACAAAGTTCACCAGATTTGTTGATTCAGC
CAAAACTGTGCTCAAAGAAGGCGGCCCTACAGCATTCTATCGCGGAGCTA
CCTTTCGGTACGGGAGAATGTGTATTGCTGTTGGTATGATGGACTTCCTC
CAGAGCAACATTGGACCTATGATGTACCCGCACAAGTTTGTTTGA
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