mRNA_H-akashiwo_Contig1145.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1145.10.1
Unique NamemRNA_H-akashiwo_Contig1145.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A1Z5KL01_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL01_FISSO)

HSP 1 Score: 263 bits (673), Expect = 1.190e-82
Identity = 148/322 (45.96%), Postives = 195/322 (60.56%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLY-QGSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAF 963
            MQI +K LIGK +   V+    +E  K  +   E +  P   QRL+ +G +LEDGRT A+Y I+ +S +HL +RL GMIS+FT  D +N    YLMLTDEQR     PL  L +    +GA    TF + E+  IL+  Q  L C+ L+YMW+ T   + + +RVDM+LVVPD     LLE  +     +        V+  L+R + Q    +K+ALRMT+GPTNACI+FHCDG YA+ T+QIALN  SEY GGRL F+    L VL R  GS   HP  VLHGVT L SGTRKSLFV+D  NGLGE  +++V+ + +  F
Sbjct:    1 MQIYVKTLIGKTVAISVKSRDTIETAKRLLAEREGV--PEDQQRLIFAGMQLEDGRTFAAYKIRAKSTLHLALRLRGMISTFTYNDPSNPLIRYLMLTDEQRANEPVPLDLLREKAAREGADPYSTFRYQENAGILTADQCELICSFLDYMWEATE-TDDAPNRVDMRLVVPDEQFEQLLEPFLQEDTPNS-------VLTKLQRTFRQSGGGSKVALRMTKGPTNACINFHCDGGYATRTSQIALNDPSEYVGGRLVFFVNDVLHVLERPAGSLVQHPRQVLHGVTCLTSGTRKSLFVVDRFNGLGEGGVVEVSSDQVDGF 312          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A1Z5KFC5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFC5_FISSO)

HSP 1 Score: 258 bits (658), Expect = 2.290e-80
Identity = 150/325 (46.15%), Postives = 201/325 (61.85%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQGSSK---AKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAFI 966
            M+I +K   GK ++  V    +V   K  I   E IL  +  QR++ +G +LEDG TLASYNI + S IHLV+RL GMIS+FT  D ++    YLMLTDEQR     PL  L +    +GA    TF + +D  IL+  Q  L  + L+YMW+ T  ++ S +RVDM+LV+PD   + LLE         D+    + V+  L+  ++  SK   +K+ALRMT GPTNACI+FHCDGPYA+ST+QIALN  S+Y GGRL ++    L V  R  GS   HP +VLHGVTSL SGTRKSLFV+D  NGLGE  +++V+  H+  F+
Sbjct:    1 MKIYVKTSTGKTLSICVNQRDIVATTKILIAETEGIL--VDQQRIIFAGKQLEDGCTLASYNITEGSTIHLVLRLRGMISTFTYNDPSDPLIRYLMLTDEQRSNEPIPLDLLRRKAESEGAGLCTTFCYQQDAGILTADQCELISSFLDYMWEATE-SDASPNRVDMRLVIPDEQFKQLLEYAHQ----GDT---PNSVLAKLRLAFRQVSKRDGSKVALRMTNGPTNACINFHCDGPYATSTSQIALNDPSKYAGGRLVYFVNDVLHVPERPVGSLVQHPSSVLHGVTSLRSGTRKSLFVVDTTNGLGEGGVVEVSSAHVEGFL 315          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A812I3A5_9DINO (Ubi protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I3A5_9DINO)

HSP 1 Score: 246 bits (628), Expect = 7.380e-76
Identity = 140/329 (42.55%), Postives = 189/329 (57.45%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQ--------GSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAF 963
            MQI +K L G  IT DVE    ++ +KE+I   E I  P+  QRL+ +G +LEDGR+L  Y I++E  +HLV RL GMIS F      +  +A+LML+DE R   E PL  L Q   E+ AS   TF F +D  IL P    +    L+YMW     A+    RVD+++ + D +  SLL ++               V++ L+  +         G  ++K+ LRMTRGP+N CI FHCDG YA+ T Q+AL+   EY GGRLCF+  G L VL R  GS   HPP VLHGVT+L  GTRKSLFV+D+ NGLGE+ ++  +  H+  F
Sbjct:    1 MQIFVKTLTGATITIDVEASDTIDCVKEKILAKEGI--PVDKQRLIFTGLQLEDGRSLCDYKIQKEPTLHLVFRLRGMISVFGPGAPEDPLSAFLMLSDEDRATAEVPLPELRQKAKEEHASAFHTFAFQDDARILDPLVRKVLSEFLDYMWGQEAAAS---PRVDLRMHIHDDVFLSLLSISSSA---------GQEVLRLLREAFAAIPGTPGPGKGRSKVVLRMTRGPSNGCIDFHCDGSYATGTVQVALSEPWEYNGGRLCFFVMGGLHVLERSAGSLCQHPPAVLHGVTALKEGTRKSLFVVDMQNGLGEEGVVVPSHIHVQGF 315          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A812RHV2_9DINO (TU20 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RHV2_9DINO)

HSP 1 Score: 246 bits (627), Expect = 1.100e-75
Identity = 141/329 (42.86%), Postives = 198/329 (60.18%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQ--------GSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAF 963
            MQI +K L GK +T DVE    ++++K ++   +E + P++ QRL+ +G +LEDGRTL+ Y IK+ES +HLV+RL GMIS F      +  +A+LML+DE R     PL  L +   E+ AS   TF+F ED  IL P    +    L+YMW     A     RVD+++ VPD +  SLL +T        S+     V++ L+  +         G+ ++K+ LRMTRGP+N+CI+FHCDG YA+ T Q+AL+   EY+GGRLCF+    L VL R  GS   HP  VLHGVT+L  GTRKSLFV+D  NGLGE+ ++  +  H+  F
Sbjct:    1 MQIFVKTLTGKTVTLDVEASDTIDNVKSKVQ-DKEGVPPVQ-QRLIFAGTQLEDGRTLSDYKIKKESTLHLVLRLRGMISVFRPGAQDDPLSAFLMLSDEDRATAGVPLAELRKKCQEENASAFHTFSFKEDARILDPSARKVLSEFLDYMWGQECSA-AGPPRVDLRMHVPDDVFLSLLSIT-------SSV--GPEVLRLLREAFAAIPGTPGAGALRSKVVLRMTRGPSNSCINFHCDGGYATGTVQVALSEPWEYKGGRLCFFVMDGLHVLERPAGSTCQHPRTVLHGVTALQEGTRKSLFVVDTENGLGEEGVVLASHVHVQGF 317          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A7S3UUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUM9_HETAK)

HSP 1 Score: 239 bits (611), Expect = 9.540e-75
Identity = 117/151 (77.48%), Postives = 130/151 (86.09%), Query Frame = 1
Query:  517 DVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQGS-SKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAFI 966
            D +L SLLEMT+D+H   DS YRS RVV NLKRLYQG    AKI +RMTRGPTNACI+FH DGPYA+STTQIALNPESEYEGGRLCFY+ G+LT LSR+PGS SHH P VLHGVT+LISGTRKSLFVLD  NGLGEKD+I+VTPEHIAAF+
Sbjct:    1 DDVLTSLLEMTLDQHFSPDSTYRSQRVVNNLKRLYQGFVGDAKIVMRMTRGPTNACINFHYDGPYATSTTQIALNPESEYEGGRLCFYSNGKLTELSRRPGSCSHHSPGVLHGVTNLISGTRKSLFVLDRNNGLGEKDVINVTPEHIAAFV 151          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A812QEB8_9DINO (UBC protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QEB8_9DINO)

HSP 1 Score: 222 bits (565), Expect = 2.480e-66
Identity = 129/320 (40.31%), Postives = 178/320 (55.62%), Query Frame = 1
Query:    7 ILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQGSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAFI 966
            +L+K L G   +F V P T  E +K  + + E    P+  QRLL +G +L+D        I+  S +HL+MRL GMIS F  +   +  + YLML+D++R   E PL+ L +   E+ A    TF F ED  IL P         L++MW   T      SRVD+++ +PD     LL    + H  ++ +        ++    Q   ++KIALRMTRGP+N CI+FHCDG YA+ T QIAL+  SEY+GGRLCF+    L VL R  GS   HP  VLH VT+L  GTRKSLFV+D  NGLGE  ++  + E +  F+
Sbjct:    5 VLVKTLTGASRSFTVRPTTTGEQMK--MLIQECYGYPLDQQRLLYNGRQLDDWDIFEECGIQANSTLHLIMRLRGMISIFKVSSEDDSLSTYLMLSDDERARAEVPLEDLQRKFEEENAGQWSTFAFTEDAGILGPAVRRRLSEFLDFMWSRETT---DSSRVDLRMHLPDEEFILLLATVGNNH--AEILEALRHAFTDIPGTPQARGESKIALRMTRGPSNGCINFHCDGGYATGTVQIALSEPSEYQGGRLCFFVNDRLHVLERPAGSMCQHPRAVLHAVTALTGGTRKSLFVVDKCNGLGENGVVVASREDVQEFL 317          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A0G4FBA2_9ALVE (Ubiquitin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBA2_9ALVE)

HSP 1 Score: 220 bits (561), Expect = 1.710e-62
Identity = 130/322 (40.37%), Postives = 183/322 (56.83%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMW-DVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLYQGSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLGEKDIIDVTPEHIAAF 963
            + + +K L GK IT  VEP+  + H+K  I   E I  P   QRL+ +G KLED   L  YNI+ ES +HLV+RL GMIS+FTS+D ++    +LML+D++R+    PL  L      + A  + +FT  E    L+P+ +      +++MW    +   R+    D+KLV+P   LR ++ +       ++    S  VV  +  L+   + AK A+R T GPT ACI FHCDG YAS T QI +N ++EY GGRL F+    L    R PGS + H   VLHGVT L SG RKSLFV+D GNGLG+ D+   T + + +F
Sbjct:    7 IDLFVKTLTGKTITLQVEPDDSIPHVKNLIQDKEGI--PPDQQRLIFAGKKLEDIMYLDDYNIQTESTLHLVLRLRGMISTFTSSDLSSPQVRFLMLSDQERENQPAPLAALRATAAREQADLSVSFTRHESCS-LTPEHLRALSDFVDFMWYRGISWGGRTMRAKDLKLVLPTETLRRVIRLPAPAESGAEG---SPDVVDQILMLHPEKTYAKFAMRRTEGPTKACIDFHCDGDYASHTVQICVNDQAEYAGGRLVFFTEKGLEFPERTPGSVTVHCRKVLHGVTHLESGVRKSLFVVDSGNGLGQSDVHYATSDDVESF 322          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: K0SBA4_THAOC (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBA4_THAOC)

HSP 1 Score: 204 bits (520), Expect = 1.810e-60
Identity = 116/313 (37.06%), Postives = 180/313 (57.51%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMWDVTTPANRSESRVDMKLVVPDV--LLRSLLEMTMDRHLCSDSIYRSHRVVQNLKRLY-----QGSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGNGLG 918
            M++  K      I++DV+PE  ++ + ERI+ +         QR +  G  L+  RT   Y I+  S +H+  RL GMIS+FTS D ++    YLM+TDE+R+ V PP++ L ++   KGA  +R+  + +D +IL   Q  L C +L++MWD T  ++ ++    + +       L   L ++     L  +  Y S ++V   +  Y       S   ++ALRMT+  TN+CI+FHCDG YA+ST+QI LNP +EY+GG LCF+A+ ++ +++R  GS   H P VLHGVT +  G RKS+F+LD  N LG
Sbjct:    1 MRVTFKFSSEDRISWDVDPEDRIDIVGERIYYN--FGAKTDEQRFIFRGKSLDQSRTFRQYGIEDGSEVHVGQRLRGMISTFTSNDLSDPLVNYLMMTDEEREGVSPPIEELREMARAKGAVVDRSGHYVDDPDILHDYQRRLLCDLLDFMWDRTAASSDNDRGNSLCVTYSSAFSLTGELAQVLSPLDLHMEERYSSEKLVGKFETQYWSVPGASSKHRRLALRMTKA-TNSCINFHCDGTYATSTSQIPLNPPTEYKGGSLCFFAKDKVIMVARTVGSVVGHSPKVLHGVTRVTEGVRKSMFILDDTNNLG 310          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A7S3DDB4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDB4_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 4.520e-30
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  640 KIALRMTRGPTNACISFHCDGPYASSTTQIALNPESEYEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLDVGN 909
            KI  R+TRGP++ACI FHCDG ++S T QI LNPE+EYEGG+L F+   E+ V  R PGS S H   VLHGVT L  GTRKSLFV+D  N
Sbjct:   23 KIVFRVTRGPSDACIGFHCDGVHSSHTVQIPLNPETEYEGGKLVFFNNNEIVVAPRPPGSLSVHEAKVLHGVTKLKRGTRKSLFVVDEAN 112          
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Match: A0A7S3CYP6_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CYP6_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 7.300e-29
Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGGKLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDEQRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEYMW 456
            MQI +KNL G+ +  +VEP    E +KE I   E I  P   QRL+ +G +L DGR LA YNI++E  +HLV+RL GMISSFT++D ++   AYLM+ +E+R+    P++ L  +   KGA  +      +D  IL P Q+ L C  L++MW
Sbjct:    1 MQIFVKNLSGRTVNLEVEPLDTTESVKEIIQKKEGI--PPDQQRLIFAGKQLHDGRKLADYNIQKEDTLHLVLRLRGMISSFTTSDVSDPTVAYLMMHEEEREAAVAPIEALKAMRESKGARISGDVQLEDDSGILHPLQLDLLCRFLDFMW 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1145.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5KL01_FISSO1.190e-8245.96Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KFC5_FISSO2.290e-8046.15Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A812I3A5_9DINO7.380e-7642.55Ubi protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A812RHV2_9DINO1.100e-7542.86TU20 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S3UUM9_HETAK9.540e-7577.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812QEB8_9DINO2.480e-6640.31UBC protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A0G4FBA2_9ALVE1.710e-6240.37Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
K0SBA4_THAOC1.810e-6037.06Ubiquitin-like domain-containing protein (Fragment... [more]
A0A7S3DDB4_9EUKA4.520e-3061.11Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S3CYP6_9EUKA7.300e-2942.76Hypothetical protein (Fragment) n=2 Tax=Palpitomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1145contigH-akashiwo_Contig1145:372127..373092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_128778
PFAMsubiquitin
Model size966
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.09e-28
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Descriptioncellular macromolecule catabolic process
Cds size966
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387096.9224315-CDS-H-akashiwo_Contig1145:372126..3730921681387096.9224315-CDS-H-akashiwo_Contig1145:372126..373092Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1145 372127..373092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1145.10.1prot_H-akashiwo_Contig1145.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1145 372127..373092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1145.10.1

>prot_H-akashiwo_Contig1145.10.1 ID=prot_H-akashiwo_Contig1145.10.1|Name=mRNA_H-akashiwo_Contig1145.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=322bp
MQILIKNLIGKWITFDVEPETMVEHLKERIFLHEEILLPIRLQRLLISGG
KLEDGRTLASYNIKQESMIHLVMRLLGMISSFTSTDTTNLATAYLMLTDE
QRKEVEPPLQTLNQLVLEKGASCNRTFTFCEDFEILSPQQISLFCAMLEY
MWDVTTPANRSESRVDMKLVVPDVLLRSLLEMTMDRHLCSDSIYRSHRVV
QNLKRLYQGSSKAKIALRMTRGPTNACISFHCDGPYASSTTQIALNPESE
YEGGRLCFYARGELTVLSRKPGSYSHHPPNVLHGVTSLISGTRKSLFVLD
VGNGLGEKDIIDVTPEHIAAFI
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mRNA from alignment at H-akashiwo_Contig1145:372127..373092-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1145.10.1 ID=mRNA_H-akashiwo_Contig1145.10.1|Name=mRNA_H-akashiwo_Contig1145.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=966bp|location=Sequence derived from alignment at H-akashiwo_Contig1145:372127..373092- (Heterosigma akashiwo CCMP452)
ATGCAGATCTTGATCAAAAATCTCATCGGCAAATGGATAACTTTCGATGT TGAACCGGAAACAATGGTCGAGCATTTAAAGGAGCGAATTTTCTTACATG AGGAAATCCTATTGCCCATTCGTCTTCAGAGGTTGCTTATCTCGGGCGGC AAGCTAGAGGATGGCCGCACTCTAGCTTCCTATAATATAAAGCAAGAGAG CATGATACACCTCGTGATGAGACTTTTAGGGATGATCAGTTCATTTACTT CAACGGATACAACGAATCTCGCAACAGCTTATTTGATGTTGACCGATGAA CAGAGAAAGGAGGTCGAGCCACCACTGCAGACGCTCAACCAACTCGTACT CGAAAAAGGGGCAAGCTGTAACAGAACATTCACGTTTTGTGAAGACTTTG AAATTCTCTCACCGCAGCAGATCTCCCTCTTCTGTGCTATGCTGGAGTAC ATGTGGGACGTAACTACTCCTGCAAACAGAAGCGAGTCTCGTGTTGACAT GAAGCTGGTTGTACCGGATGTTTTGTTGAGATCTTTGCTGGAGATGACAA TGGATCGCCATTTATGCTCTGACTCAATATATCGCTCCCACCGTGTGGTT CAAAATCTTAAAAGACTTTATCAAGGCTCTAGCAAAGCGAAAATTGCGCT GCGTATGACTCGTGGTCCAACTAATGCGTGCATCAGCTTCCATTGCGATG GCCCATATGCTAGTAGCACTACACAGATTGCGCTCAACCCTGAGAGTGAG TATGAGGGAGGTCGCCTCTGTTTCTATGCAAGAGGGGAGTTGACAGTGCT GTCTCGCAAGCCAGGGTCTTACTCCCATCATCCCCCAAACGTATTGCATG GTGTGACAAGTCTCATCTCTGGGACACGCAAGAGTCTTTTTGTACTGGAT GTCGGAAATGGTCTTGGTGAGAAAGACATCATTGATGTGACCCCTGAGCA TATTGCTGCTTTCATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1145:372127..373092-

>mRNA_H-akashiwo_Contig1145.10.1 ID=mRNA_H-akashiwo_Contig1145.10.1|Name=mRNA_H-akashiwo_Contig1145.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=966bp|location=Sequence derived from alignment at H-akashiwo_Contig1145:372127..373092- (Heterosigma akashiwo CCMP452)
ATGCAGATCTTGATCAAAAATCTCATCGGCAAATGGATAACTTTCGATGT
TGAACCGGAAACAATGGTCGAGCATTTAAAGGAGCGAATTTTCTTACATG
AGGAAATCCTATTGCCCATTCGTCTTCAGAGGTTGCTTATCTCGGGCGGC
AAGCTAGAGGATGGCCGCACTCTAGCTTCCTATAATATAAAGCAAGAGAG
CATGATACACCTCGTGATGAGACTTTTAGGGATGATCAGTTCATTTACTT
CAACGGATACAACGAATCTCGCAACAGCTTATTTGATGTTGACCGATGAA
CAGAGAAAGGAGGTCGAGCCACCACTGCAGACGCTCAACCAACTCGTACT
CGAAAAAGGGGCAAGCTGTAACAGAACATTCACGTTTTGTGAAGACTTTG
AAATTCTCTCACCGCAGCAGATCTCCCTCTTCTGTGCTATGCTGGAGTAC
ATGTGGGACGTAACTACTCCTGCAAACAGAAGCGAGTCTCGTGTTGACAT
GAAGCTGGTTGTACCGGATGTTTTGTTGAGATCTTTGCTGGAGATGACAA
TGGATCGCCATTTATGCTCTGACTCAATATATCGCTCCCACCGTGTGGTT
CAAAATCTTAAAAGACTTTATCAAGGCTCTAGCAAAGCGAAAATTGCGCT
GCGTATGACTCGTGGTCCAACTAATGCGTGCATCAGCTTCCATTGCGATG
GCCCATATGCTAGTAGCACTACACAGATTGCGCTCAACCCTGAGAGTGAG
TATGAGGGAGGTCGCCTCTGTTTCTATGCAAGAGGGGAGTTGACAGTGCT
GTCTCGCAAGCCAGGGTCTTACTCCCATCATCCCCCAAACGTATTGCATG
GTGTGACAAGTCTCATCTCTGGGACACGCAAGAGTCTTTTTGTACTGGAT
GTCGGAAATGGTCTTGGTGAGAAAGACATCATTGATGTGACCCCTGAGCA
TATTGCTGCTTTCATT
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