mRNA_H-akashiwo_Contig1141.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1141.6.1
Unique NamemRNA_H-akashiwo_Contig1141.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1141.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1141contigH-akashiwo_Contig1141:203946..211691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size511
Hectar predicted targeting categorysignal anchor
Exons5
Cds size408
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1141.6.1prot_H-akashiwo_Contig1141.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1141 203952..211477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.5814464-UTR-H-akashiwo_Contig1141:203945..2039511681387095.5814464-UTR-H-akashiwo_Contig1141:203945..203951Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1141 203946..203951 -
1681387095.6432688-UTR-H-akashiwo_Contig1141:211477..2114841681387095.6432688-UTR-H-akashiwo_Contig1141:211477..211484Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1141 211478..211484 -
1681387095.656319-UTR-H-akashiwo_Contig1141:211601..2116911681387095.656319-UTR-H-akashiwo_Contig1141:211601..211691Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1141 211602..211691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.5933046-CDS-H-akashiwo_Contig1141:203951..2040951681387095.5933046-CDS-H-akashiwo_Contig1141:203951..204095Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1141 203952..204095 -
1681387095.6028206-CDS-H-akashiwo_Contig1141:210947..2110341681387095.6028206-CDS-H-akashiwo_Contig1141:210947..211034Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1141 210948..211034 -
1681387095.613652-CDS-H-akashiwo_Contig1141:211186..2112601681387095.613652-CDS-H-akashiwo_Contig1141:211186..211260Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1141 211187..211260 -
1681387095.627742-CDS-H-akashiwo_Contig1141:211374..2114771681387095.627742-CDS-H-akashiwo_Contig1141:211374..211477Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1141 211375..211477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1141.6.1

>prot_H-akashiwo_Contig1141.6.1 ID=prot_H-akashiwo_Contig1141.6.1|Name=mRNA_H-akashiwo_Contig1141.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
MALISKGERRTPFLISVVVIAITFFLCSCYIIHQEECGSHLVRQPAWEVG
IVPNLIDAKASKQQALELSTWGLFNGEGVSYGWEPYNEVTHQHPWLATCV
SMTFLAAVIALVIVLGRFSTSDVERADWQDYDTNY*
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mRNA from alignment at H-akashiwo_Contig1141:203946..211691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1141.6.1 ID=mRNA_H-akashiwo_Contig1141.6.1|Name=mRNA_H-akashiwo_Contig1141.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7746bp|location=Sequence derived from alignment at H-akashiwo_Contig1141:203946..211691- (Heterosigma akashiwo CCMP452)
GGCGGCAGGCAGCAGAGCGTTATTGTTATAATCCATTGTTGTTGTGATGA
GGAGAAAGTCTAAGTCTTCAAAGTTCTGCTGACAGTAGTGGTTGGTGCAC
CTGAAATCTTTTGCTAGCGAGATCATGAATGTTTTGTTAGCTGTACTCAT
ATTTTACCTTGGTTTTCCATAATCAAAAAAGACTACTGAATATGCGTTAT
CATACAGATTTTTTATGGCGCTGATAAGCAAAGGAGAGAGGCGAACGCCT
TTCTTGATATCTGTTGTGGTGATAGCTATCACGTTTTTCTTGTGCAGCTG
TTATATAATTCATCAAGGTAACTTATTTGATGTGACCAAGCTGTGCATTT
TTGAAGCGAAATGGCCAACGAAGTACTGCCTTTTGAATTTGAAGATTATT
CTGATCTGTCCTCTCCCAATTTTTCATTCAGAAGAATGTGGCAGTCACTT
GGTGCGGCAGCCTGCTTGGGAAGTTGGAATAGTTCCAAACTTAATAGATG
CCAAGGTAAAATAAAGTTTATTGGCAAATTCAGGCTTGTTAAGTAGTGCT
CTACAAATTTTATGCAATAACACCACAAAACTCAATCTTCCAGGCACGGC
ACACTTGTTTTTTTTCCTCTCTCTCTCTCAATGGAATGGTGGTTGGAATA
AATCTAGGCGTCAAAGCAACAGGCACTGGAGCTATCAACTTGGGGTTTAT
TTAATGGTGAAGGGGTTTCTTATGGATGGGAACCCTATAATGAGGTGAGC
TTCTCATTTGTCAGCTTTTTCATGTGCTGAATGGCACTCACCCCCCCCCC
CCCTTTACGCTTTAGCAGTTCAGTTCAAATACAAAAGCAAGGATGGGAGA
GAGGCAGTATCTGGGTTATTGTTGACCATTGTACTACCACAGAAAAAACA
GCAACTTTAATCTTCACACCCTCAATGCAGTGTCTGGCAAAAAAAAACAG
AAAGAAGAGAGAAGAAAAAAGTAAAATAAAAAAGAATAAAAAACAACCAC
AACAACAACATCAACAAAACTGTAGCTTGCAGCCCCAACTCTTGCCATAG
AAAAAATGCGTCATTGTAATACTCGTCCTGCTCGAGTGACAATTGGAGGC
CGGAGCTTCCGTCCTTGTAGTTGGGAAAAAAAAAACACTACAGGGGTGGG
ATTTTCTTGGAAAATTCCAAAAAATCCGGGGGTTTCGCGAAAAAAAAGGC
ACCTAGTCGGTGTCAGGCTAAAGGGTACAAGGATTTGGCCAAATCCCCCG
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGCTCTACGGCTCGGAACA
TCCGGGGCGAACTTTTTTTTTTTTTTTTTTGTCTACGTATAAGCACAAAG
TGGAGAAAATAGTTCAACTAGGCTATGATGCTACCTCTGCTCATGTCATT
TGTATTTTTCTTTCTTTCCCTTTTTTTTTTTTTTTTTTTCTTTTTCTAAG
ACTTCTGATGTGGCTGGGAGACAATATGACGTTGAAGCTGCTTTCTGAGT
GGGATGAAACCTGCTATGCGCTGCTGTTGAAGAGCTTCATGATCAAGGCT
GTTCCATATCTCTGGGATTCTTGCTCTGTAGCTCCTTTTTGTACGTCACC
AGTGAGGGCCTGTTCCTGTGTGGCGGATTGCAGCAGCCTTCAGCTGATGA
GGGTGCTGCGGCCCCGCCGCCCGTTGTGCTGCGATTCTGTCAGAGGATCT
CGTGGACTTGGTCGTGGGAGGAGCAAATACTGGCTGCACTTCACTCAGCG
CCCCCGCCCTTGGCCATCGAAAGCAGCTTGCAGGTGAGGCCAACTGCCGC
GCCCTGCCTCCTACTTTCCAGCGGGGGATGAGGAAGGCAGACGAGTCCGC
GAGCATCGAGACAGCACTGCTTTGAACCCTGTCAATTTTTTTGAGATAGC
CCTCGGCCGCCCCCAAGTAGATGAGGTTGCCGTACTCAATCTTTGATCGT
ACAAAAGCCTTGTAGGCCATCATCTTGGCACGATCATCCAGCATGTGGGC
GATCCTCCTAATGGCACCGAGCCTCTTCCGGGCCTCCTTGGCTACTGCCT
TGGCATGTAGGGACCAATTACCTCATGGATCGATGGTGAAACCCAGCGCC
TCTAGCTGCTCCTTCTCTTCAACAATCACTCCCCCATGGATAGAGGAGGG
TGAGTAACCTTGTGATTTTCAGGCGAGTTGGTGATGATCAGCTCCTGGGA
CTTGGTAGGTTCAAACTCTAGTAGCCACTCCTTGCCAAACTCATAGAGGC
GCTGCAGATCATCGCTCAGCTCCTCTGCCGCCCTCTCTGCGCCCGCCCCC
TCTTCCCTGTCTACATCCTTCTGGAGGGTGAGGTCATCTGCGTGAGAAGA
GGCATAGAGCCTCCCTGACTCGCTGTGGGACGCTAAATGAAGAGGTCAAA
GAGGAGAGGCGACCAGATGGCCCCCTGCGGCACCCCAGACTTGATGCTCA
TATGACTGGAGCTGTCACCATTTGCCACTACAAAGAGGGCCCGGTCTGAC
AAGTAGCTCTGCATCAGCTTGAAGGCCTTAGGGCGCACACCCACCGCCCA
GAGATGAGCAAGAAGACCCCGCCACCACACCTTATCAAAGGCACCCTTGA
AGTCGAGCGCCACCAACCGCACATCTTTCCTGGCTTCAAGGGCCAGGGGA
GATTCTGTCGGCGGGATGACGCCGACATCCACGGTCCCCGTACCAGGTAG
GAAGCCAAACTGGTTGGGCGGGATGTGCCCGAAGAGAAAACTGCTGAGCT
GCTTCATGAGAACGCGCTCAAACGTGGTGGCCAAAGTGGGCAGCACCGAG
ATCGGCCGGTAGTTCTCCGGGAGGCTGGCATCCTTCTTCTTGTAGACAGG
GGTGACCCTTGCCACCTTCCAGCTCCTGGGGAACTCACCAGATTTGCCCA
CTTTCTGAAAAAGCCGAGTGAGAGGGCGCGCCAGCTGCCGGGCGCAGTGC
TTCAGTACCCGCGGGCTAACTCCGTCCGGGCCCACCGACTTGCGCACGTC
CAGCGACTGCAGCACCTTAGACACTTCCCCAGGGGTGATCTTGAAGCCCC
GCAACCTTCTGGCTCCAGGTGGAGCCGGCTCCAGCTCCGGCACTTCTTTG
CTCTCCTCACCAGGTAGGCTCATCTTCTTGGCGAAGTATTTTGCCAGGTC
CTCAGCAGGGGGGGCAGCTTTCCGCCGCTGTCTGGTCATGCCGGAGTGCG
ACTTAGTGATCTGCCAGAACTCTCTGTCGCTGGTCCCCTTCTTGGCAAGT
TTGGTCTTGAGTCGCTCCATGTACCTGCCATAGGCTCTCTTGCACACTTG
AAGGCAGCATTTGGTGGCCCACATGATGGCTTTCTTGTTGCCTCCTTGAA
AAGCCCGCTGCTTCCGCCTCAGGGCCCACTCACACTCAGGGGTCCACCAG
GGCAAGGGCCTGCCTGTGGTGGGGGCTGTTGAAGGAACATATTTGTTGGT
GAGCTCCTTCAGGGTGTTTGTGATCAGGTCAACAGACTCCTGGCCAGTGA
GGTTTTCAAAATCAAAAGAAGTCCTGCTCAGTTCTACATTCATTTCCCTC
CAGTTAGCAAGACTCCAGTGATACAGTTTCCTTCCTGGCACAGGTTCTTC
AACCTTCAGCGAAAAGTCCAGCGTAGCCAGAACTGCATCATGATCCGAGG
ATCCCATCTTTGGCAAAAGCCGAGCTTTACCTGCAGAAGGCGTGAGGACT
ATGTAGGTCCAAGAAATTCTTGCCCCTCGTTGGTTTATCCACCACATTCA
CCATGTTGTGGTTCTCGCAAAATTCCTCCAGCCTCTCCCCACGAGCATTT
GACTTTGAGCACGAACCAAGAAATTATTTATTGTGCGCATTGAAATCTCC
ACAAATAACAGACTTTAGACCGTCAGTCTCAATCTTATAGCCTGGAGTTT
TTCAAGGGCAATGAAGAGATCGGTGTTTTTTCCGCTTGGTTGGGCATTCA
CTGTGATGATCACCACCCCCAGCTCTTCGATTCGAACGGCAACCATCTCG
GCCGTTTCTGGGATATGATACGCACTAGTGTCGTAAGCAGAAAATAGAAG
AGAATCTCGAAGAAAAATCAAGACTCCACCACCATGCTTATTCCCTATCA
CGCCGACCAGCACAGATGTAACCGCCAGGCGTCAAAGGGTTGATCGAGTC
GCCGCCTAGAAATGTCTCCGCCACGCAAATGACATGAGCAGAGGTATCAT
GAGCCGTTGCAGCTAGTTCTCCACAAGCCTGGCGCAAACTTCGTGACGTT
AGCAACTAATGCCTTTAGTGACGGAGCCCGCTTCCAGCTTGCTTTTTCAG
AGTTGTGTCCTCAGAGACCATTATCTTTGAAATGCTTCAAACTCAAGAAT
TTCATTGCTGACCGTGACCGAGGATACGGAGTCTGAAGGACCCATACAAA
CCTTCTCAAAATGAGTCCTGGAACCGTTTGCCCTCAATAGATACCCCCGC
CCAAGCCTTCGCCCTTCTCTTTTCGTCCAGGCGGAAGGTATAAATAGAAA
TTCAAAACGGTTGTTGCGATATATATGATATACGAGGAGGCAGTTTAGAT
TTTTGGTTGAAGACTATATATGTTTTAAATCGTTGCATGATACGCAAGCG
CAAATTGCCGAATGGGTAAAGCGCACGGCTTGCTTTTTGGGTCTGATCCG
GGTTCGAATCCCGGCGCGTGCCCGCGACAACGATTTGGCCGAATTTCCCA
TAGAGGGATGTCCCCTTAAGCCTGACACCGACTACCTATTTGACCCCGTC
AGAACACCTTCAGCAGGAAAAAAAAAATGCGAAGTTTTCAAATAAATTCC
CGAAAATCCGCATTTTCCTGCTGAAAAGCTCTTATTTGGGGAATTCGGGA
TGCAAGAAAGTATCGAATTTCGGGATAATTGTTCTTCTTCCCTCTTCTTC
CTCTCCTTCCTTTTTCGCCTTGCCTCATCATTTTGACTTGCGCGTGATTC
TCCTGCTCCTATTATACTCGCTCCTCCTGCTTCTGTCTTCCTGCACGTGC
CATGGCTTCTGAGCACATCGTCGGGTAGTGTCTCAGTAGTGACCAACTTG
AAGTTCCCCCTGCGCAAAGCCCTTTATGCTCTGTTTGCCCTTTGGCCCAG
ATCCAGTCTTTCAGTTGTCTCATTCGTTGGCGCTTCCTCCGACAACCCAC
TGCCATGATCAGTGCGTCTGTCTTTACCCTGCGGGCCGAGGAAGTTCCCA
TGGACATGGTCATTCTCCCTCTGGTTGCGAAGTATGGTAGGTACTCCTCG
CCATGACGCTTATGGCGCCTTATGGTATTCCAGTGTCGAGGAATCTCAAC
TCTCCGACCAGCCTACGAGCACTGGCTGCCTGCTCGTTTTTAACGCTGTC
AGTTACGGATGCAACTGCATGTTTTGATCAAGTCGCCATCATAAACTGAA
GAGGTAGAAGAAGGGGGGAAAAGAAAGAGAAGAACTCACCGATATTATTT
GAGACCCAAGGACTTACCTAGGGGGTAAAAATGCGGACTCTATACAGGGT
CAATTTAGGCCCGCAGGGTAAACACGCGGACTCGGCATGATCTGAGGTCC
GTGGAAACGACAGGCTCATTCAAGGCCTGCAGAATTCAGCAGGGCTATTG
GGAGGCCCGTAGGGTCAACATGCGGAGTCGGTAGGGTCATTATAGGCCCG
CAGGCTCTAAATGCGGAGTCAGCAGAAAAAAATATGAAATCAGCGATGGC
ATGCGTCGGTTTGCAATGGTGAAGCGGATGTCAGGACGGGTCCAGTTGCA
CAGCTGCGGGGTATGTGGTCAACGTTATTGGTCGGTCACCCTAGCGCAGC
TATAGGAGTATTGCGACAGGTTCTTGAAGAAGCTGCCAAAGTAACCTAGC
GCATGCAGTGATATTGCCACTCGGCAGGGCTAATGGGAGGCCCGTAGGGT
AAAAATGCGGAGTCAGCAGGGTCATTTTAGATCTGCAGGGTCAAAATGTG
GGGAAAACTGCGGAAGGGTCTGAGGGCTCAGCTCAGGGTTTGTTTTATCT
TTTGGCATATAGAAGTTGATGTTTGTTTATTGTTGCATTCTGTCCTCAAA
TTAAAAAAAAAAAAACGGAGAAACTCCGAAAAATTGGGTCTTCAATGTAT
TGGAGTGAAACTCGAAGCATGGAAATGGGATGCTAACGACATGTTGGGGG
CACTTCTATTTTGAAAAGAGGGTCCGAATGGCACCAGTTTCGTCGATTTT
GGTGCTCGGGAAGGCTTCCTTTGAAAAAAATGGATTTTTCAGGTTTTTTT
TCGCAGAAAAGGGCAACTGTGGGTGAGGCCTAAGCCACGGGGGGGGGGGC
GGCTTTTACACAGAAAAGCGAAAGGCTCTCTGACCAAATCCAGAAGACTT
CGTTTCAAATCTGGGACCTCACTTTTTGCTCTCCAAGAGCAGCTCTTCTG
GCACTTGAACGTCTCTTCTGCTCCGGGGAAGAGGTTGGCGTTTTTCGAGT
GAATCCAGTTTTTTAATGCCTCATTGGCCCATGGACATGGCGCCCCTTTT
GGGTCGCTCTTGCACAAGTGACCAAGCGAAGCATATGTTTTTCAGATCCT
ACACAGCTCTTGTTTCATTGTGTAATGATGCGCATCATTCTTTTTCCTGT
AGAAATCAGCAGTGTGTGCTCTATTCCTTGCTCATGGACCCCACCACGAG
CGACATGTCAGCGACATGTGAGTTTGTGAGCACTTTTCAATTCCGACGCC
GACGCCAAGAGACTTCTGAGATGATGCCCACCACCGCCGAGTCTAGGTGG
TGGGGCGATAGTTAAGACTTTAGACGTGGTGACTGAAAACGGGAACAGTG
GACTGCTGAAGTGCTAGAATGGAGCTTTGAGGTGGGGCGGAAGTGGCTTG
AATGTGGTGCTGCACCTTCTCGCCTTTGGCCTGCTGGCAACACTTTTTTT
TTTTTTTTTCTTTCTTTTTTTTTTTTAACCTGCCGTTGAGATGGAGAGGC
TGCAAGAAAGAGTCCTGAAGAAGAAAAGCCTGGAGTGCTGGAAGTAAGAC
AACGCCATGAATCACTGGAACATCGCCCAACAGTCAAAGACTGTAGGAGT
AGCCAAGGTCACTTCCATACCAAGGAACTGCTCCGATGAGTTGCCAGAAT
TTGGCTATATGTACAATGACAGTGAAGTGTGACACCGTTTATTGGGGGGT
GGCATTGTATAATGAATAACGTAGACAAAAAATAAAATAAAAAATAAGTT
GTTGTTTGTTTATTGTTGCATTTTGTCCTCAAATGAGAGCTGTTGTAAAA
TTTAATGATGTTTGCTGGTAGTAGTTGTTGTAGAATAGGAAGTGATGTGT
GTAGAGGTCTTTGTTGGAACACAAGTTCAATTTTGCACCACACCACCACC
ACCACGAGGCCACCCACGGCTTGCACTTGCCGGCCTACTTTGAATAATGT
AATCACTGTGCGACATCAATTGGAAACACTTGGAGATTCTCCTGCCGGGC
CTGTTCTTCATTCGAACTACTTGTAATCCCTGATGATTGTATTATGACAA
GTATAATGGCTGTTAGTCAAGCTTCTGTCGCTTAGAGGAGGCCAAGCCAC
AGGAAGAAAAGGAAGCCCCCGGGTCCCAACAACCGCCGCCCCGCAGGTGA
CGCACCAGCACCCCTGGCTGGCCACCTGCGTGTCCATGACCTTCCTGGCG
GCGGTGATCGCGCTGGTGATCGTCCTGGGCCGCTTCAGCACCTCGGACGT
GGAGCGCGCCGACTGGCAGGACTACGACACCAACTACTGACGACTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1141:203946..211691-

>mRNA_H-akashiwo_Contig1141.6.1 ID=mRNA_H-akashiwo_Contig1141.6.1|Name=mRNA_H-akashiwo_Contig1141.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1141:203946..211691- (Heterosigma akashiwo CCMP452)
ATGGCGCTGATAAGCAAAGGAGAGAGGCGAACGCCTTTCTTGATATCTGT
TGTGGTGATAGCTATCACGTTTTTCTTGTGCAGCTGTTATATAATTCATC
AAGAAGAATGTGGCAGTCACTTGGTGCGGCAGCCTGCTTGGGAAGTTGGA
ATAGTTCCAAACTTAATAGATGCCAAGGCGTCAAAGCAACAGGCACTGGA
GCTATCAACTTGGGGTTTATTTAATGGTGAAGGGGTTTCTTATGGATGGG
AACCCTATAATGAGGTGACGCACCAGCACCCCTGGCTGGCCACCTGCGTG
TCCATGACCTTCCTGGCGGCGGTGATCGCGCTGGTGATCGTCCTGGGCCG
CTTCAGCACCTCGGACGTGGAGCGCGCCGACTGGCAGGACTACGACACCA
ACTACTGA
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