mRNA_H-akashiwo_Contig1140.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1140.2.1
Unique NamemRNA_H-akashiwo_Contig1140.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1140.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1140contigH-akashiwo_Contig1140:133733..135001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1269
Hectar predicted targeting categoryother localisation
Exons1
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.4475722-UTR-H-akashiwo_Contig1140:133732..1338091681387095.4475722-UTR-H-akashiwo_Contig1140:133732..133809Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1140 133733..133809 +
1681387095.4699106-UTR-H-akashiwo_Contig1140:134499..1350011681387095.4699106-UTR-H-akashiwo_Contig1140:134499..135001Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1140 134500..135001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.460343-CDS-H-akashiwo_Contig1140:133809..1344991681387095.460343-CDS-H-akashiwo_Contig1140:133809..134499Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1140 133810..134499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1140.2.1prot_H-akashiwo_Contig1140.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1140 133810..134499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1140.2.1

>prot_H-akashiwo_Contig1140.2.1 ID=prot_H-akashiwo_Contig1140.2.1|Name=mRNA_H-akashiwo_Contig1140.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=230bp
MGNTNRTFSKTDFSFRIYLAHDDTTLAEAAAARVKEMLDQSFRKQGLLEP
AIIYSPAMFDVDELLKALTVATDMVFLLTDRVMENPRCQVELFQAVKSDV
NLAFLNIAEGNFSVERSHKYVLDMYQSSVDESHLAFLKKHGITVSELKEV
LNKLFEEKIPFHSSIPTVSAHSTTEEMADDFLLVLSNQAYIEQLDNDMRW
PPRKSSFDKNPDLAVLPSPDASSEVVGFM*
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mRNA from alignment at H-akashiwo_Contig1140:133733..135001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1140.2.1 ID=mRNA_H-akashiwo_Contig1140.2.1|Name=mRNA_H-akashiwo_Contig1140.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1269bp|location=Sequence derived from alignment at H-akashiwo_Contig1140:133733..135001+ (Heterosigma akashiwo CCMP452)
CTCAAACCAGGAAAGCAAAAATATTAAAAGCAGTATGTTAAAGTAAAAGC
TTCTTAGGGGAAATTTCTCAAAGAAGCATGGGGAACACAAATAGAACTTT
TAGCAAGACGGATTTTTCTTTCCGTATTTATCTGGCTCATGATGATACAA
CTTTGGCCGAGGCTGCAGCGGCGAGAGTGAAAGAAATGCTCGACCAGTCG
TTCCGGAAGCAAGGACTGCTTGAGCCAGCTATCATCTACTCACCAGCAAT
GTTTGACGTCGATGAGCTTTTGAAAGCACTAACTGTAGCGACGGACATGG
TGTTTCTTCTTACAGACAGAGTCATGGAAAACCCTCGGTGCCAAGTGGAG
CTATTTCAGGCCGTCAAGTCCGATGTTAATCTTGCGTTTCTAAACATTGC
AGAAGGTAATTTTAGCGTTGAGAGATCTCATAAGTATGTCCTTGACATGT
ATCAAAGCTCAGTTGATGAAAGCCATCTTGCATTCCTTAAAAAACATGGC
ATCACAGTGAGCGAGTTGAAAGAAGTTCTAAACAAACTGTTCGAAGAAAA
GATACCTTTTCACTCTTCCATTCCAACAGTATCTGCGCACAGTACAACTG
AGGAGATGGCAGATGATTTCTTACTAGTATTATCAAACCAAGCTTACATC
GAACAGCTTGATAATGACATGAGATGGCCCCCAAGGAAGAGTAGCTTTGA
CAAGAATCCAGACTTGGCTGTACTGCCCAGTCCAGATGCTAGCAGTGAGG
TTGTGGGATTCATGTAATAACACACAAACTAGACTTCCAGGCTTGATTGT
GCTGCCTAGTCCAGATGCTCGCAATAAAAGTAGGGTATAGTCTTCTGTTG
TGTCCCCTTGCGTATTGAATTTTAGATTGAAGGTGTTTTGTTTTGTTTTG
TTTTTTGATTATTACTTGTTTTACTCATACTGTGCCCACAATTCCACTCT
CTGTGCAAACGCATATTCGGGGACGTTGAGTCCTAGTCTTTGGAGATCAA
GAAAGAATGAGCCCGTTGTTATTTTAGTGGTGTAAGCATTTTTTGCTTGG
CAGCAGTTTGTGCGTCGGCAACGACTGAAGAAAAGAAGCACATCTTCACC
ACCACTCCTTCATCTTTTGTCCACGGTTTATTATCTCCAGCTGATTGGCT
GTAAAGAACGTTGAACAACTTGCTTGGCAGTTGTTGTCGAGGGGGTGCTG
TCTTTTATTTCCATTGCTTTCGCAATATGATACTAGTCCAGGAATTAATG
ATAATAATAATGATGCTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1140:133733..135001+

>mRNA_H-akashiwo_Contig1140.2.1 ID=mRNA_H-akashiwo_Contig1140.2.1|Name=mRNA_H-akashiwo_Contig1140.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=690bp|location=Sequence derived from alignment at H-akashiwo_Contig1140:133733..135001+ (Heterosigma akashiwo CCMP452)
ATGGGGAACACAAATAGAACTTTTAGCAAGACGGATTTTTCTTTCCGTAT
TTATCTGGCTCATGATGATACAACTTTGGCCGAGGCTGCAGCGGCGAGAG
TGAAAGAAATGCTCGACCAGTCGTTCCGGAAGCAAGGACTGCTTGAGCCA
GCTATCATCTACTCACCAGCAATGTTTGACGTCGATGAGCTTTTGAAAGC
ACTAACTGTAGCGACGGACATGGTGTTTCTTCTTACAGACAGAGTCATGG
AAAACCCTCGGTGCCAAGTGGAGCTATTTCAGGCCGTCAAGTCCGATGTT
AATCTTGCGTTTCTAAACATTGCAGAAGGTAATTTTAGCGTTGAGAGATC
TCATAAGTATGTCCTTGACATGTATCAAAGCTCAGTTGATGAAAGCCATC
TTGCATTCCTTAAAAAACATGGCATCACAGTGAGCGAGTTGAAAGAAGTT
CTAAACAAACTGTTCGAAGAAAAGATACCTTTTCACTCTTCCATTCCAAC
AGTATCTGCGCACAGTACAACTGAGGAGATGGCAGATGATTTCTTACTAG
TATTATCAAACCAAGCTTACATCGAACAGCTTGATAATGACATGAGATGG
CCCCCAAGGAAGAGTAGCTTTGACAAGAATCCAGACTTGGCTGTACTGCC
CAGTCCAGATGCTAGCAGTGAGGTTGTGGGATTCATGTAA
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