mRNA_H-akashiwo_Contig1139.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1139.9.1
Unique NamemRNA_H-akashiwo_Contig1139.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 505 bits (1301), Expect = 8.200e-178
Identity = 240/303 (79.21%), Postives = 274/303 (90.43%), Query Frame = 1
Query:   97 MELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLGGDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            MELH+HL S GF+RSG+E CLY+ RD  G ELMVA+YVDDLVISGSS A+VS+FK+SLASKY+LTD G+LTQILGIKV RDK  KCF+L QTSFIK+A++KFGLDYLPAC+TP+DHT DLTPTPGFKA+LSDAN YRSMVGTLAWVANWTRPELAF VHKLQR+Q NP PKHFEA +RAFRYLKGTQSE LRLGGDLVLR F+D+DFC DR DGKSV+ Y++ LGD PIVW+S+LQGAVTTSTVEAEYLALRSAVKDIMWLR LL ++GCPQ +PTPVVEDNSAC+EWAND++V+K+NRHFHV
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHV 302          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 357 bits (917), Expect = 9.310e-121
Identity = 171/215 (79.53%), Postives = 193/215 (89.77%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYL 645
            +P  + DPQHPNKVWKLNKAL+GLKQSPR+WYMELH+HL S GF+RSG+E CLY+ RD  G ELMVA+YVDDLVISGSS A+VS+FK+SLASKYNLTD G+LTQILGIKV RDK  KCF+L QTSFIK+A++KFGLDYLPAC+TP+DHT DLTPTPGFKA+LSDAN YRSMVGTLAWVANWTRPELAF VHKLQR+Q NP PKHFEA +RAFRYL
Sbjct:   55 QPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 292 bits (747), Expect = 2.540e-87
Identity = 144/337 (42.73%), Postives = 219/337 (64.99%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLS--DANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLGGDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            +P G++ P   +KV KL K+L+GLKQ+P+ WY  L+  LL QG+ R+GY+ C+Y +  S+GG+ ++++YVDD+V++ S  + +S  K++++  YN++D+G++  ILGIKV RD+  +   L Q SFI+EA  KF +        P++   D+         LS  +A ++RS+VGT+ W+A WT PE+A+++H L +  ++P      A+    RYL  T+ + + LGG L L  + DADFC++R  G+S S + I LG +PI+W+SR+Q  VT +T EAEY++LR+AV D+MWL+ LL  LG  +Q   P+ EDN ACI WAND  VSK  RH HV
Sbjct:  613 QPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHV 948          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 223 bits (568), Expect = 3.500e-66
Identity = 109/167 (65.27%), Postives = 129/167 (77.25%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGE-LMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDAN 498
            +P GF D  HP+KVWKL KAL+GL+QSPRLWY  LHE LL Q F RS YE CLY R++S  GE  MVA+YVDDLV+S +  ++VS  K S  S++++TDLG LT ILGIKV+RD   KCFYL Q SF+++AISKFGLDYLPACRTPM +  DLTPTPGFKA L DAN
Sbjct:  243 QPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL)

HSP 1 Score: 216 bits (551), Expect = 6.640e-64
Identity = 118/325 (36.31%), Postives = 185/325 (56.92%), Query Frame = 1
Query:   37 KVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRD-SSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDA---NRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLGGDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHF 999
            +V +L  +L+GL+Q+ R W  EL     S GF R   + C+YVRRD  +    +VA++VDD+ +   +   ++  K  L+SK+ +TDLG L QILG++++++       L Q ++    +   G++   A +TP+D    LTP       + D    + Y S +G L ++A  TRP+LAFAV  L +    PGP+H  A +R FRYL+GT S  +   G   L +F+DAD+  D  D +S+S Y+  LG +P+ WASR Q  V  ST+EAEY+A      +I+WLR L  +LG   + PTP+  DN + I++A + +   +++H 
Sbjct:    4 RVCRLKLSLYGLRQAGRNWNRELDAAFRSLGFTRLTADQCVYVRRDPKTDSPTIVAVHVDDMTLCARTDEELTQIKGELSSKFKVTDLGPLKQILGMEISQNPTDGSIRLSQANYASRVLESVGMEKANAVQTPLDPNVKLTPLAKGDPRIGDTAFRHGYLSGIGKLMYLAVATRPDLAFAVQHLSQFSIRPGPEHMSALKRVFRYLRGTTSLGIAFRGSGDLHIFSDADWGNDNTDRRSISGYLSFLGASPLSWASRKQPTVALSTMEAEYMAAARTTCEIIWLRQLASELGISVEAPTPIHIDNQSAIKFAENPMFHARSKHI 328          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A8J5YN71_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YN71_9ROSI)

HSP 1 Score: 223 bits (568), Expect = 8.700e-64
Identity = 124/337 (36.80%), Postives = 194/337 (57.57%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLGGDLVLRV--FTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            +P GFK P   + V++L KAL+GLKQ+PR WY  +  +L+  GF+RS  E  LYV++++S  +L+V +YVDDL+++G   AM++DFK  +   + ++DLG++T  LG++VT+ + G  F+L Q +F  + + KF +    A  TP+     LT      ++      YRS++G L ++   TRP++ FAV  L R        HF AA+R  RY+KGT S  +       LR+  +TD+D+   + D K+ S Y   LG     W+S+ Q  V  STVEAEY+A   AV   +WLR +L DL   Q++ T +  DN + +  A + V   + +HF++
Sbjct:  271 QPEGFKVPHKEDMVYRLKKALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKENSKTQLIVFVYVDDLLVTGGDQAMLADFKTKMHQMFQMSDLGEMTYFLGMEVTQSQAG--FFLSQRTFAIKILDKFSIQNCKATSTPVAVGERLTSQSN--SEKVYETTYRSLIGCLLYLTA-TRPDIMFAVSLLSRFMHYYNEDHFRAAKRVLRYIKGTLSYGMYYNNARKLRLIGYTDSDWAGSKDDLKNTSGYAFTLGSAMFCWSSKKQSIVAQSTVEAEYVAAAGAVNQAIWLRKILGDLNLYQKEATEIYCDNMSAVAIAKNPVFHGRTKHFNI 602          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A8J5ZNM0_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZNM0_9ROSI)

HSP 1 Score: 218 bits (554), Expect = 3.320e-63
Identity = 121/337 (35.91%), Postives = 194/337 (57.57%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLG--GDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            +P GF+ P   + V++L KAL+GLKQ+PR WY  +  +LLS  F+RS  E  LYV+R+ +  +L+V++YVDDL+++G     +++FK  +   + +TDLG +T  LG++V + + G   +L+Q SF  + ++KF +       TP+     L+   G +        YRS++G L ++   TRP++ FAV  L R       +HF+AA+R  RY+KGT +  L      +L L+ +TD+D+   + D KS S Y   LG   + W+S+ Q  V  ST EAEY+A  SAV   +WLR +L DL   Q++ T ++ DN + +  A + V   + +HF +
Sbjct:  105 QPEGFEVPGKEDMVYRLTKALYGLKQAPRAWYARIDSYLLSLKFERSASEPTLYVKRNKTETQLVVSLYVDDLLVTGGDEVDLAEFKIKMQQMFEMTDLGLMTYFLGMEVNQTQAG--IFLKQESFALKVLTKFSMLNCKPTPTPVVARVKLSSHEGHEEVCETT--YRSLIGCLLYLTA-TRPDIMFAVSLLSRFMHCCNVQHFQAAKRVLRYIKGTLNYGLLFSKAAELRLKGYTDSDWAGSKDDMKSTSGYAFTLGSAMVCWSSKKQSLVAQSTAEAEYVAAASAVNQAIWLRKILADLNLIQEEATEILCDNKSAVAIAKNPVFHGRTKHFDI 436          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A8J5YYQ4_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YYQ4_9ROSI)

HSP 1 Score: 216 bits (550), Expect = 3.350e-63
Identity = 123/337 (36.50%), Postives = 194/337 (57.57%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLGG--DLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            +P GF        V+KL KAL+GLKQ+PR WY  +  +LLS GF+RS  E  LYV++  +  +L+V++YVDDL+++G    M++DFK  +   + ++DLG++   LG++V +   G   +L Q +F  + +SKF ++      TPM   A L+   G++  +S+A+ YRS+VG L ++   TRP++ ++V  L R       +H +AA+R  RY+KGT S  L+     DL L  +TD+D+   + D KS S Y   LG     W+S+ Q  V  ST EAEY+A   AV   +WLR +L DL   Q++ T +  DN + +  A + +   + +HF +
Sbjct:   49 QPQGFVVSGKEQMVYKLKKALYGLKQAPRAWYTRIDSYLLSLGFERSISEPTLYVKKKQAETQLIVSLYVDDLLVTGGDRNMLADFKAKMKDTFEMSDLGQMIYFLGMEVQQTHSG--IFLGQKTFAAKILSKFSMENCKPTSTPMAVGAKLSGQEGYE-QVSEAD-YRSLVGCLLYLTA-TRPDIMYSVSVLSRFMHCCNKQHLQAAKRVLRYIKGTLSYGLKFSRNEDLKLIGYTDSDWAGSKDDMKSTSGYAFTLGSAMFCWSSKKQSIVAQSTAEAEYVAAAGAVNQAIWLRKILADLNLYQKEATEIFCDNKSAVAIAKNPIFHGRTKHFSI 380          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A540M9F0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540M9F0_MALBA)

HSP 1 Score: 217 bits (552), Expect = 1.290e-62
Identity = 126/336 (37.50%), Postives = 181/336 (53.87%), Query Frame = 1
Query:    1 RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRL--GGDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFH 1002
            +P GF+     +KV+KL KAL+GLKQ+PR WY E+  +L S  F RS  E  LY + D  GG L+V+IYVDD+V +GSS  ++S+FK  +  KY ++DLG L   LG+ + + + G   ++ Q+ + K  + KFGL+       P+     L    G  ++ +D   YR +VG+L ++   TRP+L +A   L R  + P  KHF  A R  RY++GT S  +      D +L  F DAD+     D +S S Y    G     WAS  Q  V  ST EAEY++   A    +WLR +L D G  Q D TP+  DN + I    + V  +K RH +
Sbjct:  132 QPEGFEVKNACHKVYKLRKALYGLKQAPRAWYSEIDAYLTSCNFIRSTSEATLYTKSDEEGGILIVSIYVDDIVYTGSSKTLLSEFKMEMMQKYEMSDLGLLHHFLGMGILQTENG--VFIHQSKYAKSLLVKFGLEDCKPVSIPLPTGEKLKKVDG--SEFADETMYRKIVGSLLYLTA-TRPDLMYAASLLSRFMNGPTKKHFGIARRVLRYVQGTLSYGIEYTKDSDAILVGFCDADWAGSEDDCRSTSGYAFSFGSGVFSWASVKQNTVALSTAEAEYVSAAEATAQAIWLRFVLDDFGEMQADATPLFCDNMSAISMVKNPVFHQKTRHIN 462          
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 216 bits (549), Expect = 1.660e-62
Identity = 120/336 (35.71%), Postives = 189/336 (56.25%), Query Frame = 1
Query:    4 PSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYEFCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLGKLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTADLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNPGPKHFEAAERAFRYLKGTQSERLRLG--GDLVLRVFTDADFCADRADGKSVSDYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDLGCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHV 1005
            P GF  P    KV +L ++L+GLKQS R+W     + L   GF+ +  + CL+ R + +     V +YVDDL+I+GSS  +  D  + L S + + DLG++ Q LG++V R++ G  F L Q + ++  + + GL       TPM+    L+ T      L D   YR  +G+L ++A  TRP+++FAV +L R   +P  + ++A +R  RYL G+   +LR    G + L  F DAD+  D+AD KS S Y   +G + + W+SR Q  V  S+ EAEY+A   A +D++W+R +L D+G  Q +PT V EDN  CI+ A     +++ +H  +
Sbjct:  107 PPGFSQPTTGGKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCLFSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGS-FLLYQAAKVRHLLKEHGLLDAKPVATPMEANF-LSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDI 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1139.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK8.200e-17879.21Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK9.310e-12179.53Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.540e-8742.73Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK3.500e-6665.27Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A146HFR8_MYCCL6.640e-6436.31Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A8J5YN71_9ROSI8.700e-6436.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5ZNM0_9ROSI3.320e-6335.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5YYQ4_9ROSI3.350e-6336.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540M9F0_MALBA1.290e-6237.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QJX2_TRIMR1.660e-6235.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1139contigH-akashiwo_Contig1139:363266..364291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo141588
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1026
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.33e-58
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size1026
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.5038123-CDS-H-akashiwo_Contig1139:363265..3642911681387094.5038123-CDS-H-akashiwo_Contig1139:363265..364291Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1139 363266..364291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1139.9.1prot_H-akashiwo_Contig1139.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1139 363266..364291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1139.9.1

>prot_H-akashiwo_Contig1139.9.1 ID=prot_H-akashiwo_Contig1139.9.1|Name=mRNA_H-akashiwo_Contig1139.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=342bp
RPSGFKDPQHPNKVWKLNKALHGLKQSPRLWYMELHEHLLSQGFQRSGYE
FCLYVRRDSSGGELMVAIYVDDLVISGSSSAMVSDFKRSLASKYNLTDLG
KLTQILGIKVTRDKLGKCFYLQQTSFIKEAISKFGLDYLPACRTPMDHTA
DLTPTPGFKADLSDANRYRSMVGTLAWVANWTRPELAFAVHKLQRSQSNP
GPKHFEAAERAFRYLKGTQSERLRLGGDLVLRVFTDADFCADRADGKSVS
DYVILLGDTPIVWASRLQGAVTTSTVEAEYLALRSAVKDIMWLRHLLVDL
GCPQQDPTPVVEDNSACIEWANDLVVSKKNRHFHVCIMPPC*
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mRNA from alignment at H-akashiwo_Contig1139:363266..364291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1139.9.1 ID=mRNA_H-akashiwo_Contig1139.9.1|Name=mRNA_H-akashiwo_Contig1139.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1026bp|location=Sequence derived from alignment at H-akashiwo_Contig1139:363266..364291+ (Heterosigma akashiwo CCMP452)
CGGCCTTCTGGTTTTAAGGATCCTCAGCACCCCAACAAGGTCTGGAAGCT TAACAAGGCGCTGCACGGCCTCAAGCAGAGCCCACGCTTGTGGTACATGG AACTGCATGAGCATCTCCTGTCTCAAGGCTTCCAGCGCAGTGGCTACGAA TTCTGCTTATATGTTCGCCGTGATAGCTCAGGTGGTGAGCTTATGGTTGC TATCTACGTTGATGATCTCGTAATCAGTGGCAGCTCCTCTGCTATGGTCT CTGATTTTAAACGCTCTCTGGCTTCTAAGTACAATCTCACTGATCTGGGG AAGCTCACTCAGATTCTTGGCATCAAGGTCACCCGGGATAAGCTCGGTAA ATGTTTCTATCTCCAACAAACTTCCTTTATCAAAGAAGCCATCTCCAAGT TTGGGCTTGACTACTTGCCTGCCTGCAGAACCCCCATGGACCATACCGCG GACCTTACCCCTACCCCTGGTTTCAAGGCTGATCTCTCTGATGCTAACAG GTACAGGTCTATGGTGGGCACTTTGGCTTGGGTTGCTAACTGGACCAGGC CTGAGCTTGCTTTTGCTGTTCACAAGCTCCAGCGGTCCCAGTCTAATCCT GGGCCCAAGCACTTTGAGGCTGCTGAGCGAGCATTTAGGTACTTGAAAGG CACCCAATCGGAGCGCCTGAGGCTCGGGGGTGACCTTGTTCTTCGTGTTT TCACCGATGCGGACTTCTGCGCTGATCGTGCTGACGGCAAGTCTGTATCT GACTATGTTATTCTTCTTGGGGATACCCCTATCGTTTGGGCTTCCAGGCT TCAAGGGGCAGTCACTACCTCCACTGTGGAAGCTGAGTACCTTGCCCTTC GTTCTGCAGTCAAAGACATCATGTGGCTCAGGCATCTTCTTGTGGATCTC GGGTGCCCTCAGCAGGACCCAACCCCTGTTGTGGAGGACAACAGTGCCTG CATTGAGTGGGCCAATGATCTTGTGGTCTCTAAAAAGAACAGGCATTTTC ATGTATGTATCATGCCACCTTGCTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1139:363266..364291+

>mRNA_H-akashiwo_Contig1139.9.1 ID=mRNA_H-akashiwo_Contig1139.9.1|Name=mRNA_H-akashiwo_Contig1139.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1026bp|location=Sequence derived from alignment at H-akashiwo_Contig1139:363266..364291+ (Heterosigma akashiwo CCMP452)
CGGCCTTCTGGTTTTAAGGATCCTCAGCACCCCAACAAGGTCTGGAAGCT
TAACAAGGCGCTGCACGGCCTCAAGCAGAGCCCACGCTTGTGGTACATGG
AACTGCATGAGCATCTCCTGTCTCAAGGCTTCCAGCGCAGTGGCTACGAA
TTCTGCTTATATGTTCGCCGTGATAGCTCAGGTGGTGAGCTTATGGTTGC
TATCTACGTTGATGATCTCGTAATCAGTGGCAGCTCCTCTGCTATGGTCT
CTGATTTTAAACGCTCTCTGGCTTCTAAGTACAATCTCACTGATCTGGGG
AAGCTCACTCAGATTCTTGGCATCAAGGTCACCCGGGATAAGCTCGGTAA
ATGTTTCTATCTCCAACAAACTTCCTTTATCAAAGAAGCCATCTCCAAGT
TTGGGCTTGACTACTTGCCTGCCTGCAGAACCCCCATGGACCATACCGCG
GACCTTACCCCTACCCCTGGTTTCAAGGCTGATCTCTCTGATGCTAACAG
GTACAGGTCTATGGTGGGCACTTTGGCTTGGGTTGCTAACTGGACCAGGC
CTGAGCTTGCTTTTGCTGTTCACAAGCTCCAGCGGTCCCAGTCTAATCCT
GGGCCCAAGCACTTTGAGGCTGCTGAGCGAGCATTTAGGTACTTGAAAGG
CACCCAATCGGAGCGCCTGAGGCTCGGGGGTGACCTTGTTCTTCGTGTTT
TCACCGATGCGGACTTCTGCGCTGATCGTGCTGACGGCAAGTCTGTATCT
GACTATGTTATTCTTCTTGGGGATACCCCTATCGTTTGGGCTTCCAGGCT
TCAAGGGGCAGTCACTACCTCCACTGTGGAAGCTGAGTACCTTGCCCTTC
GTTCTGCAGTCAAAGACATCATGTGGCTCAGGCATCTTCTTGTGGATCTC
GGGTGCCCTCAGCAGGACCCAACCCCTGTTGTGGAGGACAACAGTGCCTG
CATTGAGTGGGCCAATGATCTTGTGGTCTCTAAAAAGAACAGGCATTTTC
ATGTATGTATCATGCCACCTTGCTAA
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