mRNA_H-akashiwo_Contig1139.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1139.6.1
Unique NamemRNA_H-akashiwo_Contig1139.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1139.6.1 vs. uniprot
Match: A0A7S3YEH9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEH9_HETAK)

HSP 1 Score: 124 bits (312), Expect = 6.250e-35
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:    3 LGPVMELLQSSYPEDFDAVAVDTKLVSVLTKICGFSAEASKKTAELGAAFSLFPMLFDPEVSP 191
            LGPVMELLQSSYPEDFDAVAVDTKLVSVLTKICGFSAEASKKTAELGAAFSLFPMLFDPEVSP
Sbjct:   37 LGPVMELLQSSYPEDFDAVAVDTKLVSVLTKICGFSAEASKKTAELGAAFSLFPMLFDPEVSP 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1139.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YEH9_HETAK6.250e-35100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1139contigH-akashiwo_Contig1139:214700..216041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size192
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.4191847-CDS-H-akashiwo_Contig1139:214699..2147951681387094.4191847-CDS-H-akashiwo_Contig1139:214699..214795Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1139 214700..214795 -
1681387094.428964-CDS-H-akashiwo_Contig1139:215946..2160271681387094.428964-CDS-H-akashiwo_Contig1139:215946..216027Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1139 215947..216027 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.438115-UTR-H-akashiwo_Contig1139:216027..2160411681387094.438115-UTR-H-akashiwo_Contig1139:216027..216041Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1139 216028..216041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1139.6.1prot_H-akashiwo_Contig1139.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1139 214700..216027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1139.6.1

>prot_H-akashiwo_Contig1139.6.1 ID=prot_H-akashiwo_Contig1139.6.1|Name=mRNA_H-akashiwo_Contig1139.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
MELLQSSYPEDFDAVAVDTKLVSVLTKICGFSAEASKKTAELGAAFSLFP
MLFDPEVSP
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mRNA from alignment at H-akashiwo_Contig1139:214700..216041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1139.6.1 ID=mRNA_H-akashiwo_Contig1139.6.1|Name=mRNA_H-akashiwo_Contig1139.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1342bp|location=Sequence derived from alignment at H-akashiwo_Contig1139:214700..216041- (Heterosigma akashiwo CCMP452)
CATTGGGCCCTGTGATGGAGCTTCTGCAGTCCAGTTACCCAGAAGACTTT
GATGCAGTCGCTGTAGACACCAAACTTGTGTCTGTACTTACCAAGGTTTG
TATCTATAAGCACCGTGTCATTGTTATTTGTCTTCTCTTTTTTCCCCACC
AATATATATAAACAGTGTTGCATGAAACAAGTTGCAGGGGAAATTACAGA
ATTGTAAAACACCGCAATGATTTCGGTTTCCTTCTCGAACCCCTTAAGAT
TTCCATTTTCACGACGTGTAAGATATCATGCCCCCCCCCCAAAATACTTT
GATTTGGTAAGAGCATACATACTACACACCGCATGGAGGAAAGTGTGTTT
CAAGTCCAGTACTACACAGCTGTGTGTAGCAACTTGGGAGATATAATCTT
ATAGAACGCGATGTCAAAAGGGAAGGTCTCACCCTTAGGCTGCCAGGCCG
GTCTTGAACCCGTGACCTCATCCTCGAGAATCCGACATACGCTGATCATT
GTGCCACACCGACCCGTCATTCACATCCCCATCACCCGATAAACACCCCC
CTGCAATCGGGAATCCCCCGATGGCCACTGACAGCGTGCAGCCTTATCAG
TGAGGGAACATAGCACCATTCATTTCCGTGTTGAGTGTTGTTGCCAGTCT
CTGCTATACCATCTTAGAACGTCATGACACAAGGAAAGGTCACACCCTTA
GGCTGCCAGGCCAGTCTTGAACCCGTGATCTTATCCTCGAGAATTTGACA
CACTGTTCATTGTGCCATGTTGACCCGTTATTCATTGCCATGTTGACCCG
TTATTCATGTCCCGATTACCCGACAAACATATGATATTATTGAGCCACTG
ATGACTATTTTTCGATTGAATAATAATGTGTAATTTTATATAGTTGTTTG
CTTGTTCCCATTTGCAAGCAGAAACATCAAGGTTTTTTTTTTGTATTCCC
TCATCATGAGTGCATAAATGTAATGGTAATATGATGTAATAGTAAATAAT
AACATAACAGCTTGTATGAATAATATTGCTCTAATTTTATATTAAAAGAA
GATCCGTGTTGTCCTGTAACACACTGCTGTTTACCTCCTGGAACGTTCTT
AATTTTTCTATTTATATTATGTATGTATATTTCTTCAAACAACAGAAATA
CGGCTGCTTCCTCTTCTTGGCTCGAAAACCACAATGTTCACATCATACCA
CCTGCAACTGAAACTTGAACACAATTGTATGTAACATCTCCAATAGATCT
GTGGTTTTAGTGCTGAAGCTTCCAAGAAGACAGCTGAACTGGGTGCTGCT
TTTTCTCTCTTTCCCATGCTTTTTGATCCAGAAGTGTCCCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1139:214700..216041-

>mRNA_H-akashiwo_Contig1139.6.1 ID=mRNA_H-akashiwo_Contig1139.6.1|Name=mRNA_H-akashiwo_Contig1139.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1139:214700..216041- (Heterosigma akashiwo CCMP452)
ATGGAGCTTCTGCAGTCCAGTTACCCAGAAGACTTTGATGCAGTCGCTGT
AGACACCAAACTTGTGTCTGTACTTACCAAGATCTGTGGTTTTAGTGCTG
AAGCTTCCAAGAAGACAGCTGAACTGGGTGCTGCTTTTTCTCTCTTTCCC
ATGCTTTTTGATCCAGAAGTGTCCCCA
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