mRNA_H-akashiwo_Contig1136.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.4.1
Unique NamemRNA_H-akashiwo_Contig1136.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:221457..221888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size433
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.6899638-UTR-H-akashiwo_Contig1136:221456..2215881681387093.6899638-UTR-H-akashiwo_Contig1136:221456..221588Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1136 221457..221588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.7018502-CDS-H-akashiwo_Contig1136:221588..2218881681387093.7018502-CDS-H-akashiwo_Contig1136:221588..221888Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 221589..221888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.4.1prot_H-akashiwo_Contig1136.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 221589..221888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.4.1

>prot_H-akashiwo_Contig1136.4.1 ID=prot_H-akashiwo_Contig1136.4.1|Name=mRNA_H-akashiwo_Contig1136.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
MGPMTARQGKRSPPTRRSSPRCNFAKQAKKHFSPPLQIDVLFAPWTWRRQ
SIFHNGGNTKREQRKGTAWIHQGKAWTLESRSCPQQTYTFLLSSIHKGIH
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mRNA from alignment at H-akashiwo_Contig1136:221457..221888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.4.1 ID=mRNA_H-akashiwo_Contig1136.4.1|Name=mRNA_H-akashiwo_Contig1136.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:221457..221888+ (Heterosigma akashiwo CCMP452)
TGTGACCGCCCCCGTGGCAGTGGGGGACGCCCCCAAGGAGTAGCTGCTTG
GGCAGGTGCTGCTGGACGACAGTGGAGAAAGCCCTGCAAAGGTGCTCGAT
GGCCCCGACGTGGAGGTGTGCCTCGCTGAGCAATGGGACCAATGACAGCA
CGGCAGGGAAAAAGAAGTCCTCCGACCCGTCGTTCTTCACCACGATGCAA
CTTTGCGAAACAGGCGAAGAAGCATTTTTCACCACCACTTCAGATTGACG
TGCTTTTTGCCCCCTGGACCTGGAGGCGCCAAAGCATCTTTCACAATGGA
GGAAACACAAAAAGAGAACAAAGAAAAGGTACTGCTTGGATCCACCAAGG
CAAAGCTTGGACGTTGGAGAGTCGTTCATGCCCACAACAAACATATACTT
TTCTGTTATCATCCATCCATAAAGGGATCCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:221457..221888+

>mRNA_H-akashiwo_Contig1136.4.1 ID=mRNA_H-akashiwo_Contig1136.4.1|Name=mRNA_H-akashiwo_Contig1136.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:221457..221888+ (Heterosigma akashiwo CCMP452)
ATGGGACCAATGACAGCACGGCAGGGAAAAAGAAGTCCTCCGACCCGTCG
TTCTTCACCACGATGCAACTTTGCGAAACAGGCGAAGAAGCATTTTTCAC
CACCACTTCAGATTGACGTGCTTTTTGCCCCCTGGACCTGGAGGCGCCAA
AGCATCTTTCACAATGGAGGAAACACAAAAAGAGAACAAAGAAAAGGTAC
TGCTTGGATCCACCAAGGCAAAGCTTGGACGTTGGAGAGTCGTTCATGCC
CACAACAAACATATACTTTTCTGTTATCATCCATCCATAAAGGGATCCAT
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