mRNA_H-akashiwo_Contig1136.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.3.1
Unique NamemRNA_H-akashiwo_Contig1136.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A379N3Q5_9PROT (Protein of uncharacterized function (DUF3253) n=7 Tax=Roseomonas TaxID=125216 RepID=A0A379N3Q5_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 4.940e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   16 RETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
            RE I   I RLAT RG EK++CPSEVAR +   GE WR LM PVR    EL ++G I  +++G+ ++  GEVRG IR R++
Sbjct:   23 RERIAESIRRLATQRGAEKSICPSEVARELG--GESWRGLMRPVRDTAMELARQGEIEVLRKGKPVEP-GEVRGVIRLRIA 100          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A419HL90_9PSEU (DUF3253 domain-containing protein n=1 Tax=Pseudonocardiaceae bacterium YIM PH 21723 TaxID=2340915 RepID=A0A419HL90_9PSEU)

HSP 1 Score: 74.7 bits (182), Expect = 9.500e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
            E +R  IL LA+ARG + +LCPSEVAR+VA   +DWR L+  VR   R L + G +   QRG+E+D  GE  GPIR  LS
Sbjct:    6 EQLRETILSLASARGPDSSLCPSEVARAVA---DDWRPLLPQVRNEARALARAGRVRLTQRGRELDPDGEWEGPIRIHLS 82          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A1W9Z2M0_9MYCO (S-adenosylmethionine tRNA ribosyltransferase n=1 Tax=Mycolicibacterium bacteremicum TaxID=564198 RepID=A0A1W9Z2M0_9MYCO)

HSP 1 Score: 73.9 bits (180), Expect = 1.720e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   25 IRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
            +RR IL L   RG +KT+CPS+ ARSV   G+DWR LM+  R + R+L + G +   QRG+ +D  G  RGPIR R +
Sbjct:    7 LRRAILSLTRERGSDKTICPSDAARSVG--GQDWRDLMDQARDIARDLARRGEVEISQRGEVLDPDGTWRGPIRIRTT 82          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: K5BKN3_MYCHD (Uncharacterized protein n=2 Tax=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) TaxID=1122247 RepID=K5BKN3_MYCHD)

HSP 1 Score: 73.6 bits (179), Expect = 2.260e-15
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
            E +   ILRLA ARG +KT+CPS+ AR+V   G+DWR LM+  R   R+L + G +   QRG+ +D  G  RGPIR R
Sbjct:    3 ERLHAAILRLARARGPDKTICPSDAARAVG--GDDWRELMDDAREAARDLARRGEVELTQRGEVLDPDGTWRGPIRIR 78          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI001FF85A35 (DUF3253 domain-containing protein n=1 Tax=Roseomonas gilardii TaxID=257708 RepID=UPI001FF85A35)

HSP 1 Score: 72.8 bits (177), Expect = 8.050e-15
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   16 RETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEID----AFGEVRGPIRFRLS 258
            RE I   I RLAT RG EK++CPSEVAR +   GE WR+LM PVR    EL + G I  +++G+ ++      G+VRG IR R++
Sbjct:   18 RERIAESIRRLATQRGAEKSICPSEVARELG--GESWRSLMRPVRDTALELARRGEIEVLRKGKPVEPGPKGHGDVRGVIRLRIA 100          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A1S8D322_9PROT (Uncharacterized protein n=2 Tax=Roseomonas TaxID=125216 RepID=A0A1S8D322_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 8.470e-15
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   37 ILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
            I RLAT RG EK++CPSEVAR +   GE WR LM PVR    EL ++G I  +++G+ ++  GEVRG IR R++
Sbjct:    5 IRRLATQRGAEKSICPSEVARELG--GESWRGLMRPVRDTAMELARQGEIEVLRKGKPVEP-GEVRGVIRLRIA 75          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI0019EF5F07 (DUF3253 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019EF5F07)

HSP 1 Score: 70.5 bits (171), Expect = 4.560e-14
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    7 DMLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
            D+  +TIR+ IL    ARG EKT+CPSEVAR +   G DWR+LM+ VR  G  LV    I+  Q+G+ +D     +GPIR+RL 
Sbjct:    5 DICPQTIRQCILEKTQARGAEKTICPSEVARELG--GNDWRSLMDSVRQAGIALVDADKILVTQKGKVVDPH-IAKGPIRYRLK 85          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A5D0XNB7_9MICC (DUF3253 domain-containing protein n=1 Tax=Arthrobacter echini TaxID=1529066 RepID=A0A5D0XNB7_9MICC)

HSP 1 Score: 69.3 bits (168), Expect = 1.640e-13
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   25 IRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
            +R EILR+A  RG+ KTLCPSE ARS+   GE WR LM   R V  EL   G +   Q G  +DA  + RGP+R R
Sbjct:   10 LRAEILRIAEHRGYGKTLCPSEAARSIG--GEQWRELMPAARRVAFELAAAGLVEVTQGGDPVDA--DARGPVRIR 81          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A6M8BGF2_9CYAN (DUF3253 domain-containing protein n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8BGF2_9CYAN)

HSP 1 Score: 68.6 bits (166), Expect = 2.680e-13
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    7 DMLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
            DM+RE I +++ +    RG +K++CPSEVARS+   GE WR+LM  VR VG +L + G I+  Q+G  +D     RGPIRFR
Sbjct:    4 DMIRECILKQVQQ----RGLDKSICPSEVARSLG--GETWRSLMPLVREVGADLAKSGAIVVTQKGIPVDP-QTARGPIRFR 78          
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI001BD9BAAD (DUF3253 domain-containing protein n=1 Tax=Williamsia sp. CHRR-6 TaxID=2835871 RepID=UPI001BD9BAAD)

HSP 1 Score: 68.2 bits (165), Expect = 3.900e-13
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
            + +R +IL L  AR    T+CPSEVAR++A     WR LM+ VR V RELV+EG +   QRG  +D     RGPIR R
Sbjct:    8 QRLREQILALLDARRDGATICPSEVARAIAPA--QWRRLMDAVRAVARELVEEGVVEITQRGHVVDP-ASARGPIRIR 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A379N3Q5_9PROT4.940e-1650.62Protein of uncharacterized function (DUF3253) n=7 ... [more]
A0A419HL90_9PSEU9.500e-1651.25DUF3253 domain-containing protein n=1 Tax=Pseudono... [more]
A0A1W9Z2M0_9MYCO1.720e-1547.44S-adenosylmethionine tRNA ribosyltransferase n=1 T... [more]
K5BKN3_MYCHD2.260e-1548.72Uncharacterized protein n=2 Tax=Mycolicibacterium ... [more]
UPI001FF85A358.050e-1547.06DUF3253 domain-containing protein n=1 Tax=Roseomon... [more]
A0A1S8D322_9PROT8.470e-1551.35Uncharacterized protein n=2 Tax=Roseomonas TaxID=1... [more]
UPI0019EF5F074.560e-1447.62DUF3253 domain-containing protein n=1 Tax=filament... [more]
A0A5D0XNB7_9MICC1.640e-1350.00DUF3253 domain-containing protein n=1 Tax=Arthroba... [more]
A0A6M8BGF2_9CYAN2.680e-1347.56DUF3253 domain-containing protein n=3 Tax=Thermole... [more]
UPI001BD9BAAD3.900e-1348.72DUF3253 domain-containing protein n=1 Tax=Williams... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:65206..65999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1336208.JADY01000008_gene2087
PFAMsDUF2256,DUF3253
Model size264
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.02e-16
EggNOG OGsCOG4338@1|root,COG4338@2|Bacteria
DescriptionProtein conserved in bacteria
Cds size255
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.7648854-UTR-H-akashiwo_Contig1136:65205..652141681387093.7648854-UTR-H-akashiwo_Contig1136:65205..65214Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1136 65206..65214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.7766676-CDS-H-akashiwo_Contig1136:65214..653191681387093.7766676-CDS-H-akashiwo_Contig1136:65214..65319Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 65215..65319 +
1681387093.7860038-CDS-H-akashiwo_Contig1136:65849..659991681387093.7860038-CDS-H-akashiwo_Contig1136:65849..65999Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 65850..65999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.3.1prot_H-akashiwo_Contig1136.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 65215..65999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.3.1

>prot_H-akashiwo_Contig1136.3.1 ID=prot_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
MLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVG
RELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLSL*
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mRNA from alignment at H-akashiwo_Contig1136:65206..65999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.3.1 ID=mRNA_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=794bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:65206..65999+ (Heterosigma akashiwo CCMP452)
CCATATGACATGCTTCGGGAAACAATCAGAAGGGAAATCCTCAGGCTGGC AACAGCAAGAGGTTTTGAGAAAACTTTATGTCCGTCTGAAGTTGCACGCT CAGTAGCCAGACAGGTAGATGATATGTATTCGTTACTCATAATTGGTCAT ATTTTCATCTATTTCAATTCATTTTGCTTGCCAGGGTGTTTTAGGTGGGT CTTTGTTTGCATCATAATGTATATATATGATGATGATGATGATGATGATG ATTTTAGTTTAGTTAAGGTCCAGCCCTATATGATGATGATGATGCTATAT TTAGTTTATAAAGATCTCGGTAGTATACATACTTAATATTAGGGGGCAGA ACCCCCCTGCCTTCGGCAGCAGCCAGACCTGCTGCACCAACATCATTCCC CCTACAAAAACCAACTATACACTAAGCCGTCTTTTAAATTGAGAAGAGGT ACCACAAATATTGAGGTCATATTGAGTTTATTATCACTACTACACGCGCT GAACCAAATGGGCAATTACTGCTACACCAAGAATTATCAATCAGTAACAA CGTGGTTAGAATAATATGTATAGTATGTATCAATTGTAATAATATTTTTC CAATAATAATGGGCGCTCATCACTACTCACAATAATACGATTAGGGAGAA GACTGGAGGGCATTGATGGAGCCAGTGCGCTGTGTTGGACGTGAACTAGT TCAAGAAGGGTTCATCATTTTTATGCAGAGGGGACAAGAGATTGATGCTT TTGGAGAAGTACGTGGGCCAATCCGCTTCCGTTTATCTTTATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:65206..65999+

>mRNA_H-akashiwo_Contig1136.3.1 ID=mRNA_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:65206..65999+ (Heterosigma akashiwo CCMP452)
ATGCTTCGGGAAACAATCAGAAGGGAAATCCTCAGGCTGGCAACAGCAAG
AGGTTTTGAGAAAACTTTATGTCCGTCTGAAGTTGCACGCTCAGTAGCCA
GACAGGGAGAAGACTGGAGGGCATTGATGGAGCCAGTGCGCTGTGTTGGA
CGTGAACTAGTTCAAGAAGGGTTCATCATTTTTATGCAGAGGGGACAAGA
GATTGATGCTTTTGGAGAAGTACGTGGGCCAATCCGCTTCCGTTTATCTT
TATAA
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