mRNA_H-akashiwo_Contig1136.3.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A379N3Q5_9PROT (Protein of uncharacterized function (DUF3253) n=7 Tax=Roseomonas TaxID=125216 RepID=A0A379N3Q5_9PROT) HSP 1 Score: 75.9 bits (185), Expect = 4.940e-16 Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 16 RETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
RE I I RLAT RG EK++CPSEVAR + GE WR LM PVR EL ++G I +++G+ ++ GEVRG IR R++
Sbjct: 23 RERIAESIRRLATQRGAEKSICPSEVARELG--GESWRGLMRPVRDTAMELARQGEIEVLRKGKPVEP-GEVRGVIRLRIA 100
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A419HL90_9PSEU (DUF3253 domain-containing protein n=1 Tax=Pseudonocardiaceae bacterium YIM PH 21723 TaxID=2340915 RepID=A0A419HL90_9PSEU) HSP 1 Score: 74.7 bits (182), Expect = 9.500e-16 Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
E +R IL LA+ARG + +LCPSEVAR+VA +DWR L+ VR R L + G + QRG+E+D GE GPIR LS
Sbjct: 6 EQLRETILSLASARGPDSSLCPSEVARAVA---DDWRPLLPQVRNEARALARAGRVRLTQRGRELDPDGEWEGPIRIHLS 82
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A1W9Z2M0_9MYCO (S-adenosylmethionine tRNA ribosyltransferase n=1 Tax=Mycolicibacterium bacteremicum TaxID=564198 RepID=A0A1W9Z2M0_9MYCO) HSP 1 Score: 73.9 bits (180), Expect = 1.720e-15 Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 25 IRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
+RR IL L RG +KT+CPS+ ARSV G+DWR LM+ R + R+L + G + QRG+ +D G RGPIR R +
Sbjct: 7 LRRAILSLTRERGSDKTICPSDAARSVG--GQDWRDLMDQARDIARDLARRGEVEISQRGEVLDPDGTWRGPIRIRTT 82
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: K5BKN3_MYCHD (Uncharacterized protein n=2 Tax=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) TaxID=1122247 RepID=K5BKN3_MYCHD) HSP 1 Score: 73.6 bits (179), Expect = 2.260e-15 Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
E + ILRLA ARG +KT+CPS+ AR+V G+DWR LM+ R R+L + G + QRG+ +D G RGPIR R
Sbjct: 3 ERLHAAILRLARARGPDKTICPSDAARAVG--GDDWRELMDDAREAARDLARRGEVELTQRGEVLDPDGTWRGPIRIR 78
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI001FF85A35 (DUF3253 domain-containing protein n=1 Tax=Roseomonas gilardii TaxID=257708 RepID=UPI001FF85A35) HSP 1 Score: 72.8 bits (177), Expect = 8.050e-15 Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 16 RETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEID----AFGEVRGPIRFRLS 258
RE I I RLAT RG EK++CPSEVAR + GE WR+LM PVR EL + G I +++G+ ++ G+VRG IR R++
Sbjct: 18 RERIAESIRRLATQRGAEKSICPSEVARELG--GESWRSLMRPVRDTALELARRGEIEVLRKGKPVEPGPKGHGDVRGVIRLRIA 100
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A1S8D322_9PROT (Uncharacterized protein n=2 Tax=Roseomonas TaxID=125216 RepID=A0A1S8D322_9PROT) HSP 1 Score: 72.0 bits (175), Expect = 8.470e-15 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 37 ILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
I RLAT RG EK++CPSEVAR + GE WR LM PVR EL ++G I +++G+ ++ GEVRG IR R++
Sbjct: 5 IRRLATQRGAEKSICPSEVARELG--GESWRGLMRPVRDTAMELARQGEIEVLRKGKPVEP-GEVRGVIRLRIA 75
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI0019EF5F07 (DUF3253 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019EF5F07) HSP 1 Score: 70.5 bits (171), Expect = 4.560e-14 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 7 DMLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFRLS 258
D+ +TIR+ IL ARG EKT+CPSEVAR + G DWR+LM+ VR G LV I+ Q+G+ +D +GPIR+RL
Sbjct: 5 DICPQTIRQCILEKTQARGAEKTICPSEVARELG--GNDWRSLMDSVRQAGIALVDADKILVTQKGKVVDPH-IAKGPIRYRLK 85
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A5D0XNB7_9MICC (DUF3253 domain-containing protein n=1 Tax=Arthrobacter echini TaxID=1529066 RepID=A0A5D0XNB7_9MICC) HSP 1 Score: 69.3 bits (168), Expect = 1.640e-13 Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 25 IRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
+R EILR+A RG+ KTLCPSE ARS+ GE WR LM R V EL G + Q G +DA + RGP+R R
Sbjct: 10 LRAEILRIAEHRGYGKTLCPSEAARSIG--GEQWRELMPAARRVAFELAAAGLVEVTQGGDPVDA--DARGPVRIR 81
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: A0A6M8BGF2_9CYAN (DUF3253 domain-containing protein n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8BGF2_9CYAN) HSP 1 Score: 68.6 bits (166), Expect = 2.680e-13 Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 7 DMLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
DM+RE I +++ + RG +K++CPSEVARS+ GE WR+LM VR VG +L + G I+ Q+G +D RGPIRFR
Sbjct: 4 DMIRECILKQVQQ----RGLDKSICPSEVARSLG--GETWRSLMPLVREVGADLAKSGAIVVTQKGIPVDP-QTARGPIRFR 78
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Match: UPI001BD9BAAD (DUF3253 domain-containing protein n=1 Tax=Williamsia sp. CHRR-6 TaxID=2835871 RepID=UPI001BD9BAAD) HSP 1 Score: 68.2 bits (165), Expect = 3.900e-13 Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 19 ETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGRELVQEGFIIFMQRGQEIDAFGEVRGPIRFR 252
+ +R +IL L AR T+CPSEVAR++A WR LM+ VR V RELV+EG + QRG +D RGPIR R
Sbjct: 8 QRLREQILALLDARRDGATICPSEVARAIAPA--QWRRLMDAVRAVARELVEEGVVEITQRGHVVDP-ASARGPIRIR 82 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1136.3.1 >prot_H-akashiwo_Contig1136.3.1 ID=prot_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp MLRETIRREILRLATARGFEKTLCPSEVARSVARQGEDWRALMEPVRCVGback to top mRNA from alignment at H-akashiwo_Contig1136:65206..65999+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1136.3.1 ID=mRNA_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=794bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:65206..65999+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:65206..65999+ >mRNA_H-akashiwo_Contig1136.3.1 ID=mRNA_H-akashiwo_Contig1136.3.1|Name=mRNA_H-akashiwo_Contig1136.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:65206..65999+ (Heterosigma akashiwo CCMP452)back to top |