mRNA_H-akashiwo_Contig1136.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.11.1
Unique NamemRNA_H-akashiwo_Contig1136.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A7S4DAY2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY2_HETAK)

HSP 1 Score: 119 bits (299), Expect = 3.190e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST
Sbjct:  219 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 279
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A7S2UZU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZU9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.930e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKS 180
            KYYVLLI+TDG+ NDMQ+TID +V AS LPLS+L+VGVG ADF NMH+LDAD  RL +
Sbjct:   88 KYYVLLIITDGMNNDMQQTIDAIVKASALPLSILIVGVGQADFSNMHVLDADNGRLST 145
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A7S4DJM6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJM6_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 4.230e-18
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            KY+VLLILTDG+INDMQ T+D +V AS LPLS+++VGVG+ADF  MH LDAD+  L S+
Sbjct:   57 KYHVLLILTDGMINDMQNTVDAIVQASSLPLSIIIVGVGNADFSAMHKLDADEHGLVSS 115
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A6P6X9Y1_COFAR (protein BONZAI 1-like isoform X2 n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6X9Y1_COFAR)

HSP 1 Score: 85.1 bits (209), Expect = 7.310e-18
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            KY+VLLI+TDG+I D+Q+TID  V AS+LPLSVL+VGVG ADF+ M ILDAD+ERL+S+
Sbjct:  455 KYFVLLIITDGVITDLQETIDAFVKASDLPLSVLIVGVGGADFKEMEILDADKERLESS 513
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A3Q7H069_SOLLC (Uncharacterized protein n=6 Tax=Solanoideae TaxID=424551 RepID=A0A3Q7H069_SOLLC)

HSP 1 Score: 84.7 bits (208), Expect = 1.000e-17
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY+VLLI+TDG+I D+Q+T+D LV A++LPLSVL+VGVG ADF+ M ILDAD++RL+ST
Sbjct:  469 ERKYFVLLIITDGVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLEST 529
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A7R9U4V3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4V3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.010e-17
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKS 180
            +Y VLLI+TDG+INDMQ TID +V  S LP+S+++VGVGDADF NMH+LD D+ RL++
Sbjct:  443 EYLVLLIMTDGVINDMQNTIDAIVECSHLPMSIIIVGVGDADFSNMHVLDGDEHRLRN 500
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A0V0IF77_SOLCH (C2 domain-containing protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IF77_SOLCH)

HSP 1 Score: 84.3 bits (207), Expect = 1.190e-17
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY++LLI+TDG+I D+Q+T+D LV A++LPLSVL+VGVG ADF+ M ILDAD++RL+ST
Sbjct:  337 ERKYFILLIITDGVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLEST 397
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A2G2WTY8_CAPBA (Protein BONZAI 3 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2WTY8_CAPBA)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 GKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQ-ERLKST 183
             KY+VLLI+TDG+I DMQ+TID LV AS+LPLS+L+VGVG ADF  M +LDAD  +RL+S+
Sbjct:   90 SKYFVLLIITDGVITDMQETIDALVRASDLPLSILIVGVGSADFSQMEVLDADNGQRLESS 150
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A4D8YTK5_SALSN (Uncharacterized protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YTK5_SALSN)

HSP 1 Score: 83.6 bits (205), Expect = 2.560e-17
Identity = 40/62 (64.52%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQ-ERLKST 183
            Q KYYVLLI+TDG+++D+++TI+++V AS+LPLS+L+VGVGDADF++M ILDAD   RL+ST
Sbjct:  462 QAKYYVLLIITDGVVSDLKETINSVVKASDLPLSILIVGVGDADFKDMEILDADNGRRLEST 523
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BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Match: A0A1U8H5J3_CAPAN (uncharacterized protein LOC107873942 n=4 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8H5J3_CAPAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.590e-17
Identity = 38/61 (62.30%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY+VLLI+TDG+I D+Q+T+D LV A+++PLS+L+VGVG ADF+ M ILDAD++RL+ST
Sbjct: 1098 ERKYFVLLIITDGVITDLQETMDALVHAADMPLSILIVGVGGADFKEMEILDADKQRLEST 1158
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAY2_HETAK3.190e-31100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZU9_9STRA2.930e-1970.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DJM6_HETAK4.230e-1866.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6P6X9Y1_COFAR7.310e-1869.49protein BONZAI 1-like isoform X2 n=5 Tax=Coffea Ta... [more]
A0A3Q7H069_SOLLC1.000e-1765.57Uncharacterized protein n=6 Tax=Solanoideae TaxID=... [more]
A0A7R9U4V3_9STRA1.010e-1763.79Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0V0IF77_SOLCH1.190e-1763.93C2 domain-containing protein n=1 Tax=Solanum chaco... [more]
A0A2G2WTY8_CAPBA1.910e-1765.57Protein BONZAI 3 n=1 Tax=Capsicum baccatum TaxID=3... [more]
A0A4D8YTK5_SALSN2.560e-1764.52Uncharacterized protein n=3 Tax=Salvia TaxID=21880... [more]
A0A1U8H5J3_CAPAN2.590e-1762.30uncharacterized protein LOC107873942 n=4 Tax=Capsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:271619..274982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4081.Solyc06g068840.2.1
PFAMsC2,Copine,Dev_Cell_Death
Model size186
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:1901700
Exons2
Evalue1.64e-18
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,37MKV@33090|Viridiplantae,3G9QY@35493|Streptophyta,44QC2@71274|asterids
DescriptionCopine
Cds size183
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.9111125-CDS-H-akashiwo_Contig1136:271618..2717291681387093.9111125-CDS-H-akashiwo_Contig1136:271618..271729Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 271619..271729 +
1681387093.9201403-CDS-H-akashiwo_Contig1136:274909..2749811681387093.9201403-CDS-H-akashiwo_Contig1136:274909..274981Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 274910..274981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.11.1prot_H-akashiwo_Contig1136.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 271619..274981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.11.1

>prot_H-akashiwo_Contig1136.11.1 ID=prot_H-akashiwo_Contig1136.11.1|Name=mRNA_H-akashiwo_Contig1136.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHI
LDADQERLKST
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mRNA from alignment at H-akashiwo_Contig1136:271619..274982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.11.1 ID=mRNA_H-akashiwo_Contig1136.11.1|Name=mRNA_H-akashiwo_Contig1136.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3364bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:271619..274982+ (Heterosigma akashiwo CCMP452)
CAGGGGAAGTACTACGTCCTCCTGATCCTCACGGACGGCATCATCAACGA
CATGCAGAAGACCATTGACACGCTGGTGGCCGCCTCCGAGCTGCCGCTCT
CCGTCCTGATGGTGGGGCGGGCGGAGGGGGGGGGCGTGCGTTGGGAGGCG
GCTTTGGAATAGGACATGATGAAGATGGCTGGTGGCAGCAGCATCAAATA
ATTCTGGGTTGTATAAGGCGCCATGAGTTTCACTGAGTATGTCAAAACAT
AGAAGATTTTTTTTTTTTTTTCTTTCAAAAAAACTGTGGTGATAATGTTC
GAGCATGAACTTTTTTGGTGGTTGTGATTAGCTCGTCTCTTCCTTTTATT
CAACAATGACATCCCCATGTACAGATCCACTCTTTGCACCTCTCCAACCG
TGGGGCTCTACCCCAGGGCACCGCATGCCTGACTGGGCTGGGCCTTTCAT
TTAACAATGACATCTCGCCGAGCCCTGAACCACTCTGAAAGTGGCGCCAT
GGCTGGCCAGCTGAGCTTCGAGATCAAGCTAGTATCGATGCAAGACGGTG
TTGGCACAGCCCAGCCAGGCATAGTGTCCAGGGGTAGAGCCCCATGGCTG
GAGAGATGCGAAGTCTTGATCTGTAAGTTCGAATGTAAAATAGAACAAAA
AATCGGTAGTATGCTTTGCTAATTGCCATCAAAAATCTCGGTATTTTGGC
TATTTGCTGTTTTACTCTTTATTCTTGATCATATACAGCAGGTGACAGAC
AGCTCTTTCGACCCTTATTGGGGTCAACCATCAGTGTCCGGTAGCCAATA
TATATATAAAAAGCTACATGTTGTTTTGCCTCTCATCACAGGAGTGGTAA
TGGTGGCCATGTCATCAGTAGGCTGTACCAGCACTTCAACTTTTATCCGT
GCAAGCACCAGGAGTTGATGTATATTTGCTAGCCGTTGGTTTTATAAGGA
GCTGGCATTTTTTGACTCAGCTACTAAATTTCCACATTAAAATCATTTGT
GTTCAATCTTATTTGCCATTTTTTCATGATTACAAAGAACTGACACGGAT
TTATTTCATGTTGGTCCTTGTGCGTGCAATGTCACAAGAGCTGTCGCCAA
GGCGCAGTTCCTGCGCCAGTAGGCTTTGATTCTACCCCTCGATGTAGTGT
GGATAAGGAAAAATAAAACCCCGGAGGTAGACAGAAAATGCTGGGAATTG
GGGAATTTCATTAAAAAGGCCAAATTCCGATAAAGAATTGGCAAAAGAAT
GGTAAATCTGCTTAGCCAATCAACATTGTCCAAAAGTTCTTCAAACGCCA
CAAAAAGTATTGACTACGCTGATCACAAAAATGAACCAATAGCTCAAATC
TGCTTCGCAAGAAGAATCCTCCAAAAACGCAGCTGTCCAATCAAATAAAC
ACACCAATCTGAATCCCCAAAAAACAGAATTCATTTTGCTTAGCCAATCA
ACATCATCGCTCAAATCTTCCATATCAATTTTGTCACGATAGCCTTGTTG
GCTAACGTCTTTTGAATCAGCGCCGATTCTAGCATGTGGTGGAGAAAAAA
AAGGGTCTCTGTCTGGGGTTATGAGAGAAATCGTGTCACCAAGGCGCAGT
TCCTCTTGGCGCCAGTTTTAATTTTACCCCTCGTTCTAGGGGTTGTTCAA
TAGCGACGTCGCTATTGGGCCAAAATTGGCCATTTTTGCGATATTGAGCC
ACTTTTTAAGATTTTGGCGATATTGAGAGTTTCAGCGAGGAATTCAGCGA
TATTGGGAGATTTTCTTCAAAAATTGGGAAATTTTCGAAATTTCTCAGCA
GTATTGGCAACCTCAGGGGGAAAAAATCAAAATTTTGATTCAATTTCTCT
TCCTCTTCATCTAAAACTAATCCAAAGAAAAAAAGACTGCGCCTTGGTTT
GGGAGCTCAGCTCAGGGTTGGGTTTGTGTGCGGTGCAATATAGCTTGGTG
CTGGATCGAATACTGACAACATCAAAACAGTATTCGCAGTGATCACGGCG
TTTTTCCAATCTGGCAATGATGAGTAGCTGCAGAAGGTCATTATTTTAGT
GGCGGGAAATCTGAGGAAGGCCACAGTATATGTGATAGTCTCAGATGAGC
CGGCATTATGTTACCCAAAAAGAGATTTCATTTGATCCATGTTTGTTGCG
CTGTCGTGGTCCTGTCGTCTGACGATGCCAGCAGTGCAATACAATGGCGT
TCATCATCGTCCCTGAAATCTCTGCCGTGATGATTTGCGCCCATTGCAGT
GCAATACAAATCAGCGCTTCTGCAGAGGTTGCCTTGCGCAACTCCAATTG
AATGCAAGTAGTTCCAGGTGTTCACAGAAGGGACTAGATGCTCAAACTGA
GAGGTTCAAACGGAGAGAATGGCTCTCGCAAAAGTTGAACTTTTCAATGC
AAGTCCAATGTAATTTTTTTCTTGCGCTCAAATACATTTGAATAAATGTT
TAGGTGCTCAAAAGCCAAAAAATGGAACTCTGATTGCAATTTAAAAAGAG
CCATATATGTATGAATTTTCATGGCACTATGTGCCATCAGTTCATTGATG
TACATGCGAAAAAATCATATGTAGGGCTTTCAGCTATGGAAAAAAAACTT
TTTTTCTACGTTTTAGCATTTAAGTGACAAAAATTGCTTGTTGTAACTGT
TACTACCTCTACCCATTATCGTCCATGTGTGTACAGTTGTCTTCTAAGAG
GAAAGTATTCTTCTACATGCTGCTGTTGGAGAGCGAGGTGCCTTAGATCG
TTCCATATGCCCGGAATTCTAGCTCTATAGCATCTTTTGACAGTTGCCAG
GGAGTTGGACGGAAGATGAACTTGTCTCAGTTGATGAAGGTGCTGTGGGC
GTGCTGCAGCCAGTCCAGCTGATCTCCGAGGTTTTGGGGCAGAGGGATAA
CATCTCAAATTGATCATTTATCACCAGTCAAAATATATTATTTAATCAAA
TGTATTTTGGCTTGATTTGGCAATTCTTCGGCCGAAATAATACTTTTTAT
TTTTTGTCATATTATAGTATATGTTTAATTTTGGCGAATCCACCGAAATG
TATTTAATTTGGCCGAAAAACATTTCATTCGAAAATCACTCCGTTGGTGG
CGTCCTCCTTCATATGACAACACAATATATGGGTTCATACAAGAAGGGAA
GGTTTTCTACACTCTGGGATGTCCAGAGACGTTCCACAGTCTACACCCTA
AAAAAAAAGCACTTCAGCCTACAGTTGCTACTCCGTCTGCTCTGAAGCTT
CCCCTTCCGGCGGTGCCGCCCGCCGCCGTCGCCGGGGGCAGGTGGGCGTG
GGGGACGCGGACTTTGAGAACATGCACATCCTGGACGCGGACCAGGAACG
CCTGAAGTCCACGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:271619..274982+

>mRNA_H-akashiwo_Contig1136.11.1 ID=mRNA_H-akashiwo_Contig1136.11.1|Name=mRNA_H-akashiwo_Contig1136.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:271619..274982+ (Heterosigma akashiwo CCMP452)
CAGGGGAAGTACTACGTCCTCCTGATCCTCACGGACGGCATCATCAACGA
CATGCAGAAGACCATTGACACGCTGGTGGCCGCCTCCGAGCTGCCGCTCT
CCGTCCTGATGGTGGGCGTGGGGGACGCGGACTTTGAGAACATGCACATC
CTGGACGCGGACCAGGAACGCCTGAAGTCCACG
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