mRNA_H-akashiwo_Contig1136.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.10.1
Unique NamemRNA_H-akashiwo_Contig1136.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A7S4DAY2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY2_HETAK)

HSP 1 Score: 109 bits (272), Expect = 1.980e-27
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 VPQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            VPQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ
Sbjct:   75 VPQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 126
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A6G1SD13_9ACAR (Copine-8 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SD13_9ACAR)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-14
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 VPQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            + Q +FLDY+ AGA+I F+ AIDFTASNGD +  DSLH++DP+G+++NPY Q
Sbjct:  295 INQATFLDYIRAGAQIHFVIAIDFTASNGDPNYPDSLHYLDPMGRKMNPYEQ 346
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A8B8EHZ1_CRAVI (copine-3-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EHZ1_CRAVI)

HSP 1 Score: 65.9 bits (159), Expect = 2.990e-11
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    7 QPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            QP+FL+++  G +I+F   +DFT SNGD    DSLH+IDP+GQQ N Y Q
Sbjct:  285 QPNFLEFIYGGMQINFTVGVDFTGSNGDPKRQDSLHYIDPIGQQPNQYMQ 334
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A6I9TQ11_SESIN (protein BONZAI 3 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TQ11_SESIN)

HSP 1 Score: 65.5 bits (158), Expect = 4.080e-11
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   13 SFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            SFLDY+++G E+SF+ A+DFTASNG+  + DSLH+IDPLG+ LN Y Q
Sbjct:  336 SFLDYISSGFELSFMVAVDFTASNGNPRSPDSLHYIDPLGR-LNAYQQ 382
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A2P2M5T9_RHIMU (Protein BONZAI 1-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M5T9_RHIMU)

HSP 1 Score: 62.4 bits (150), Expect = 4.400e-10
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 QPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            Q +FLDY+  G E+SF+ AIDFTASNG+    DSLH+IDP G+ LN Y Q
Sbjct:   80 QHTFLDYLRGGCELSFMVAIDFTASNGNPRLPDSLHYIDPSGR-LNAYQQ 128
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A2P2M5U1_RHIMU (Copine n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M5U1_RHIMU)

HSP 1 Score: 62.4 bits (150), Expect = 4.980e-10
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 QPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            Q +FLDY+  G E+SF+ AIDFTASNG+    DSLH+IDP G+ LN Y Q
Sbjct:  328 QHTFLDYLRGGCELSFMVAIDFTASNGNPRLPDSLHYIDPSGR-LNAYQQ 376
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A1Y1ISA7_KLENI (Calcium-dependent phospholipid-binding Copine family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISA7_KLENI)

HSP 1 Score: 62.0 bits (149), Expect = 6.810e-10
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 PQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            P+PSFL+Y+  G E+SF+ AIDFTASNG+ +   SLH + P G+  NPY Q
Sbjct:  319 PRPSFLEYIRGGLEVSFLVAIDFTASNGNPNDPASLHFVSPDGR-FNPYQQ 368
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A8J5SG30_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SG30_ZIZPA)

HSP 1 Score: 61.6 bits (148), Expect = 9.300e-10
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 QPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            Q +FLDY+++G E++F+ AIDFTASNGD  A  SLH+IDP G+  N Y Q
Sbjct:  311 QHTFLDYISSGFELNFMVAIDFTASNGDPRAPQSLHYIDPSGRS-NSYQQ 359
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A2G9HES6_9LAMI (Copine n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HES6_9LAMI)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   13 SFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            SFLDY+++G E+SF+ A+DFTASNGD     SLH+IDP G+ LN Y Q
Sbjct:  331 SFLDYISSGFELSFMVAVDFTASNGDPRNPTSLHYIDPSGR-LNAYQQ 377
[Close]
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Match: A0A8J6BMN7_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6BMN7_ZIZPA)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 QPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPYAQ 156
            Q +FLDY+++G E++F+ A+DFTASNGD  A  SLH+IDP G+  N Y Q
Sbjct:  223 QHTFLDYISSGFELNFMVAVDFTASNGDPRAPQSLHYIDPSGRP-NSYQQ 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAY2_HETAK1.980e-27100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6G1SD13_9ACAR1.220e-1459.62Copine-8 n=1 Tax=Aceria tosichella TaxID=561515 Re... [more]
A0A8B8EHZ1_CRAVI2.990e-1154.00copine-3-like n=1 Tax=Crassostrea virginica TaxID=... [more]
A0A6I9TQ11_SESIN4.080e-1162.50protein BONZAI 3 n=1 Tax=Sesamum indicum TaxID=418... [more]
A0A2P2M5T9_RHIMU4.400e-1060.00Protein BONZAI 1-like n=1 Tax=Rhizophora mucronata... [more]
A0A2P2M5U1_RHIMU4.980e-1060.00Copine n=2 Tax=Rhizophora mucronata TaxID=61149 Re... [more]
A0A1Y1ISA7_KLENI6.810e-1054.90Calcium-dependent phospholipid-binding Copine fami... [more]
A0A8J5SG30_ZIZPA9.300e-1058.00Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
A0A2G9HES6_9LAMI1.270e-960.42Copine n=1 Tax=Handroanthus impetiginosus TaxID=42... [more]
A0A8J6BMN7_ZIZPA1.590e-956.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:267175..267630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7Q5
PFAMsC2,Copine,Dev_Cell_Death
Model size156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons2
Evalue4.9e-12
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_001900.1
Descriptionnegative regulation of response to water deprivation
Cds size156
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.857527-CDS-H-akashiwo_Contig1136:267174..2672501681387093.857527-CDS-H-akashiwo_Contig1136:267174..267250Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 267175..267250 +
1681387093.8716457-CDS-H-akashiwo_Contig1136:267550..2676301681387093.8716457-CDS-H-akashiwo_Contig1136:267550..267630Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 267551..267630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.10.1prot_H-akashiwo_Contig1136.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 267175..267630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.10.1

>prot_H-akashiwo_Contig1136.10.1 ID=prot_H-akashiwo_Contig1136.10.1|Name=mRNA_H-akashiwo_Contig1136.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
VPQPSFLDYVNAGAEISFITAIDFTASNGDASATDSLHHIDPLGQQLNPY
AQ
back to top

mRNA from alignment at H-akashiwo_Contig1136:267175..267630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.10.1 ID=mRNA_H-akashiwo_Contig1136.10.1|Name=mRNA_H-akashiwo_Contig1136.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:267175..267630+ (Heterosigma akashiwo CCMP452)
GTTCCCCAACCTTCCTTCTTGGACTATGTAAATGCTGGTGCAGAAATCAG
CTTCATTACTGCCATAGATTTCACAGGTCAGAAAGTTTCTTTTTTCATTA
TCCTCCTTCTAAGAATACCCAGTTGTGGTAAACATGGCAAAAATGACATG
GATCAGTGTGTGTCAAATGCCTAAAATGATGCATGCCGTGTCTTTTTTTG
TTGGTTGACTATATATAATACCTATCAGCAGCAGAAAACGGTTTTTTGAA
TAGAATAACTCGTTGTAACCATAACGGAGGGGGCACAGGATCCGAGGCGG
GGCTCTGGTTGCCCTTTCGCCCCGCTGCCCCCCCCCTCCCCCCCATTGTG
TCACCTCCCCTCCTGTTACCCCCCAGCCTCTAACGGGGACGCCAGTGCCA
CGGACTCGCTGCACCACATCGACCCGCTGGGGCAACAACTGAACCCGTAC
GCCCAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:267175..267630+

>mRNA_H-akashiwo_Contig1136.10.1 ID=mRNA_H-akashiwo_Contig1136.10.1|Name=mRNA_H-akashiwo_Contig1136.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:267175..267630+ (Heterosigma akashiwo CCMP452)
GTTCCCCAACCTTCCTTCTTGGACTATGTAAATGCTGGTGCAGAAATCAG
CTTCATTACTGCCATAGATTTCACAGCCTCTAACGGGGACGCCAGTGCCA
CGGACTCGCTGCACCACATCGACCCGCTGGGGCAACAACTGAACCCGTAC
GCCCAG
back to top