mRNA_H-akashiwo_Contig1135.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1135.4.1
Unique NamemRNA_H-akashiwo_Contig1135.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S3Y4V9_HETAK (Methionine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4V9_HETAK)

HSP 1 Score: 249 bits (635), Expect = 1.570e-78
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2 
Query:   17 QKHVMYVWFDALTNYLSGVRGLDPSAGTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            QKHVMYVWFDALTNYLSGVRGLDPSAGTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP
Sbjct:    1 QKHVMYVWFDALTNYLSGVRGLDPSAGTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 111
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S4RCK1_9STRA (Methionine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCK1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.330e-59
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL---DPSAGT----AAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGFD+KHVMYVWFDAL+NYL+G+  L   DP  G     A FWPA+ HIIGKDI+WFHTVIWPC+L SA +  PTTV++HGF+NDKEGKKMSKS+GNV+DPHD L++YP DTFRWYLC+EAP
Sbjct:  175 PEGFDEKHVMYVWFDALSNYLTGIDALGVRDPETGPNPELAKFWPANVHIIGKDILWFHTVIWPCILFSAGITPPTTVFAHGFVNDKEGKKMSKSIGNVIDPHDMLNQYPVDTFRWYLCKEAP 297
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S1D9R7_CYCTE (Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9R7_CYCTE)

HSP 1 Score: 201 bits (510), Expect = 7.430e-59
Identity = 87/121 (71.90%), Postives = 101/121 (83.47%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGLDPSA-----GTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            P+GF+QKHVMYVW DAL+NYL+GV GL         G   FWPA+ H+IGKDI+WFHTVIWPC+LMSA++ LP TV++HGF+NDKEGKKMSKSLGNVVDPHD LDKY  DTFRWYLC+EAP
Sbjct:  138 PDGFNQKHVMYVWVDALSNYLTGVNGLGARTDKVPVGLEDFWPANVHVIGKDILWFHTVIWPCLLMSADIELPLTVFAHGFVNDKEGKKMSKSLGNVVDPHDMLDKYAVDTFRWYLCKEAP 258
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S4RC46_9STRA (Methionine--tRNA ligase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC46_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.010e-58
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL---DPSAGT----AAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGFD+KHVMYVWFDAL+NYL+G+  L   DP  G     A FWPA+ HIIGKDI+WFHTVIWPC+L SA +  PTTV++HGF+NDKEGKKMSKS+GNV+DPHD L++YP DTFRWYLC+EAP
Sbjct:  175 PEGFDEKHVMYVWFDALSNYLTGIDALGVRDPETGPNPELAKFWPANVHIIGKDILWFHTVIWPCILFSAGITPPTTVFAHGFVNDKEGKKMSKSIGNVIDPHDMLNQYPVDTFRWYLCKEAP 297
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S4J5C0_9STRA (Methionine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5C0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.240e-58
Identity = 91/123 (73.98%), Postives = 102/123 (82.93%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL---DPSAGTAA----FWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGFD KHVMYVWFDAL+NYL+GV G+   DP  G  A    FWPA  HIIGKDI+WFHTVIWP +LMSA +PLP  V++HGF+NDKEGKKMSKSLGNVVDPHD LD+YP DTFRWYLC+EAP
Sbjct:  396 PEGFDSKHVMYVWFDALSNYLTGVDGMGANDPEGGADAELVKFWPADVHIIGKDILWFHTVIWPTILMSAGLPLPKKVFAHGFVNDKEGKKMSKSLGNVVDPHDMLDQYPVDTFRWYLCKEAP 518
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: B8CA56_THAPS (Methionine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA56_THAPS)

HSP 1 Score: 195 bits (495), Expect = 2.620e-57
Identity = 85/123 (69.11%), Postives = 97/123 (78.86%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL-------DPSAGTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGF++ HVMYVWFDALTNYLSGV  L                WPA  HIIGKDI+WFHTVIWPC+LMSA +PLP TV++HGF+NDKEGKKMSKS+GNVVDPHD LDK+  D+FRWYLC+EAP
Sbjct:  224 PEGFEKNHVMYVWFDALTNYLSGVNALGVCNEDGSKDEELVKLWPADVHIIGKDILWFHTVIWPCILMSAGIPLPKTVFAHGFVNDKEGKKMSKSVGNVVDPHDMLDKFDVDSFRWYLCKEAP 346
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A1Z5JUD3_FISSO (Methionine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUD3_FISSO)

HSP 1 Score: 198 bits (503), Expect = 3.340e-57
Identity = 87/120 (72.50%), Postives = 101/120 (84.17%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL--DPSAGT--AAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGF   HVMYVW DAL+NYL+GV  L  DP A    A+FWPA  HIIGKDI+WFHTVIWPC+LMSA +PLP TV++HGF+NDK+GKKMSKSLGNVVDPHD LD++ +DTFRWYLC+EAP
Sbjct:  254 PEGFHDHHVMYVWVDALSNYLTGVNALQTDPDASPELASFWPAQVHIIGKDILWFHTVIWPCLLMSAGLPLPQTVFAHGFVNDKDGKKMSKSLGNVVDPHDMLDQFTTDTFRWYLCKEAP 373
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S2YTJ8_9STRA (Methionine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTJ8_9STRA)

HSP 1 Score: 196 bits (497), Expect = 9.340e-57
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGL--DPSA--GTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGF   HVMYVW DAL+NYL+GV GL  +P A  G   FWPA  H+IGKDI+WFHTVIWPC+LMSA +PL  TVY+HGF+NDKEGKKMSKSLGNVVDPHD LD +  DTFRWYLC+EAP
Sbjct:  317 PEGFKDNHVMYVWMDALSNYLTGVNGLGANPEAVSGLEKFWPADNHVIGKDILWFHTVIWPCLLMSAKIPLAKTVYAHGFVNDKEGKKMSKSLGNVVDPHDMLDLFQVDTFRWYLCKEAP 436
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S3PW86_9STRA (Methionine--tRNA ligase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW86_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.660e-56
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGLDPSA-----GTAAFWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PEGF+ KHVMYVWFDAL+NYL+G+  L+ +        +  WPAS HIIGKDI+WFHTVIWPC+LMSA +PLPTTV+SHGF+ND  G KMSKS+GNVVDPHD LDK+P D FRWYLC+EAP
Sbjct:  311 PEGFNAKHVMYVWFDALSNYLTGINALEVNGENHKTNRSCHWPASVHIIGKDIIWFHTVIWPCILMSAGLPLPTTVFSHGFVNDSNGMKMSKSIGNVVDPHDMLDKFPVDGFRWYLCKEAP 431
[Close]
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Match: A0A7S2KGA4_9STRA (Methionine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGA4_9STRA)

HSP 1 Score: 194 bits (494), Expect = 9.040e-56
Identity = 88/120 (73.33%), Postives = 98/120 (81.67%), Query Frame = 2 
Query:    2 PEGFDQKHVMYVWFDALTNYLSGVRGLDPSAGTAA----FWPASCHIIGKDIVWFHTVIWPCMLMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRWYLCREAP 349
            PE F + HVMYVWFDAL+NYL+GV G+    GTA      WPA  HIIGKDI+WFHTVIWPC+LMSA +PLP TV++HGF+ND EGKKMSKSLGNVVDPHD LD YP DTFRWYLCREAP
Sbjct:  276 PE-FKENHVMYVWFDALSNYLTGVDGMGTEDGTAPDLAKSWPADVHIIGKDILWFHTVIWPCILMSAGIPLPKTVFAHGFVNDFEGKKMSKSLGNVVDPHDMLDLYPVDTFRWYLCREAP 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1135.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y4V9_HETAK1.570e-78100.00Methionine--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
A0A7S4RCK1_9STRA3.330e-5970.73Methionine--tRNA ligase n=1 Tax=Ditylum brightwell... [more]
A0A7S1D9R7_CYCTE7.430e-5971.90Methionine--tRNA ligase n=1 Tax=Cyclophora tenuis ... [more]
A0A7S4RC46_9STRA1.010e-5870.73Methionine--tRNA ligase n=3 Tax=Ditylum brightwell... [more]
A0A7S4J5C0_9STRA1.240e-5873.98Methionine--tRNA ligase n=1 Tax=Odontella aurita T... [more]
B8CA56_THAPS2.620e-5769.11Methionine--tRNA ligase (Fragment) n=1 Tax=Thalass... [more]
A0A1Z5JUD3_FISSO3.340e-5772.50Methionine--tRNA ligase n=2 Tax=Fistulifera solari... [more]
A0A7S2YTJ8_9STRA9.340e-5772.50Methionine--tRNA ligase (Fragment) n=1 Tax=Amphipr... [more]
A0A7S3PW86_9STRA1.660e-5669.42Methionine--tRNA ligase n=1 Tax=Chaetoceros debili... [more]
A0A7S2KGA4_9STRA9.040e-5673.33Methionine--tRNA ligase n=1 Tax=Leptocylindrus dan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1135contigH-akashiwo_Contig1135:135895..142104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps13572
PFAMstRNA-synt_1g
Model size378
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.13e-52
EggNOG OGsCOG0143@1|root,KOG0436@2759|Eukaryota,2XAJ3@2836|Bacillariophyta
EC6.1.1.10
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
Cds size324
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1135.4.1prot_H-akashiwo_Contig1135.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1135 135921..142076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.5584853-UTR-H-akashiwo_Contig1135:135894..1359201681387093.5584853-UTR-H-akashiwo_Contig1135:135894..135920Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1135 135895..135920 -
1681387093.6121907-UTR-H-akashiwo_Contig1135:142076..1421041681387093.6121907-UTR-H-akashiwo_Contig1135:142076..142104Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1135 142077..142104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.5701585-CDS-H-akashiwo_Contig1135:135920..1359481681387093.5701585-CDS-H-akashiwo_Contig1135:135920..135948Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 135921..135948 -
1681387093.5803251-CDS-H-akashiwo_Contig1135:140021..1401261681387093.5803251-CDS-H-akashiwo_Contig1135:140021..140126Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 140022..140126 -
1681387093.588312-CDS-H-akashiwo_Contig1135:140725..1408101681387093.588312-CDS-H-akashiwo_Contig1135:140725..140810Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 140726..140810 -
1681387093.596378-CDS-H-akashiwo_Contig1135:141473..1415771681387093.596378-CDS-H-akashiwo_Contig1135:141473..141577Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 141474..141577 -
1681387093.6042106-CDS-H-akashiwo_Contig1135:142074..1420761681387093.6042106-CDS-H-akashiwo_Contig1135:142074..142076Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1135 142075..142076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1135.4.1

>prot_H-akashiwo_Contig1135.4.1 ID=prot_H-akashiwo_Contig1135.4.1|Name=mRNA_H-akashiwo_Contig1135.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=108bp
MYVWFDALTNYLSGVRGLDPSAGTAAFWPASCHIIGKDIVWFHTVIWPCM
LMSANVPLPTTVYSHGFINDKEGKKMSKSLGNVVDPHDELDKYPSDTFRW
YLCREAP*
back to top

mRNA from alignment at H-akashiwo_Contig1135:135895..142104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1135.4.1 ID=mRNA_H-akashiwo_Contig1135.4.1|Name=mRNA_H-akashiwo_Contig1135.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6210bp|location=Sequence derived from alignment at H-akashiwo_Contig1135:135895..142104- (Heterosigma akashiwo CCMP452)
GCCCGAGGGCTTCGACCAGAAACACGTCATGTCCGTCCCCCCCGGCCCCG
CCCCCCGCCCCGCCCCCCGCCCCGCCCCCGCCCCACCACCCGACCCTTCA
TCCTGGGAAGCAGCCACTCGGTTTGCAGGCTGGCGCCGTTCTTCGGATTC
AAACGAGGGCTTCAGTCGTGACAAGGCGATATTGGTCACAGTGCCGAGCG
GCGCCGGAACCCAGACAAGGTTGTTGGCGCTCCCGGTGTGAACGCGGCAA
GGCGCAGCGCGAGCATCAAAATTCCAGAAGGCGGAGAGAAAGCATATACA
CCATCGCACAGCGAATCGATGTGCTGCGCGTATGGAGGGCCCCGCTCGTC
TCGAGGATCGATCTGCGATGCATCCGCTATCATTGCCAACAATCGTTTGG
CGGCCGCGGTGGTTGTTCCGGGCCAAACTTCGCCCCCCCTCGGTTCTGGC
CAGTACGCAGCTTCTCCTTCAACGCCCCTCCCTGCCCTCCCCTCCCCCCC
CGCGCCGCCGCGCCGGGTCGCCGCCAGGTACGTCTGGTTCGACGCGCTGA
CGAACTACCTCTCGGGCGTCCGCGGGCTGGACCCCTCGGCCGGGACCGCC
GCCTTCTGGCCCGCCTCCTGCCACATCATCGGTCAACCCCCCAACCCCCC
GCCCTCCCCTCCCCCTCACACACATGCACACCCCTCCGCCCATCGGTCTC
CCCCGCTGCCCCCCTTCCCCGGACGGCGGCGCGTACCCCCCGACGGGGCT
TTTTGCGCGCGGACCGCCAGAACTGTGTGGGTGTGGGGTTGGCGGTGCCG
GGCGGTGCCGCCCCGGCTGCACCAGCACCCCAGAGTCGCGAGTTCCGGAC
CCCGGACCACAAGCCCTGCCGCGCTCACCTTGGTGGTGCCTAAGAAACAC
ACATTTCACTCCTACCGCTGCTGATGGGATGGCCGGGGACAGACGCAGCA
GGTGATGCTCTTCGGTGGTTCCGTGAAGGACGCTTGGGGCTTTTTTGGTT
TGCAATCTCCAGTGGCTGGCGTGCAGCAAGAGGCATCACGGTTTCCCTCA
CACGCCGCAGAGGGCTGGAGCCTTGAAGGAGCACGCCGAGGCGCGGCTGG
CAAAGAAGGCCTGCGTGTCCCCTTGTAATGCCCCCAACACCACAATCCGT
TGGCACTACGCACCCCCCAAGTGGTTCTCTACGCCCGCCGCCCCACGCTG
CCCACCCGCCGGCCACCACTCTCACACTCCCTGTCACCTTCTTCTCTGCT
GTATATTTTCATTTCATTTTTAAATACAAAACCCGTCACGGCAGGCAAGG
ACATTGTCTGGTTCCACACCGTCATCTGGCCGTGCATGCTCATGTCCGCC
AACGTGCCCTTGCCCACAACTGTTTACAGGTTTGGTCCACTCCCCATTGC
CATCTTCAGCAGATTGCCAAAAAAGACATTAGTTATTTCTTCTATATGTT
ATATAGTAGCTCCTCTTTTAAAGGTTTGTATAAGTATTGGTATAATAAAA
TGATATGTGCCTGGTGGTGAGGAGTCAGTGTGTGCTAGGACTCTCATCGT
GCTATGTGTACACATATATATATATATATATATATATATATATATCAACT
GATATTACAGTGATAATGAAAAAAATGTACAAATGATCGAACAACGCGCT
GTTTTATTGTGCATTCTTCATTCTATTCTACCTGTGGGCCTTCGATGAGA
GTGTAGTATAGTTGGCATTTACAGTGGTATATTCATTAACAATGAATAAT
TTCTTTGATGCGACTGGTTCGGCTTTGACCAACTTGGTGAGGTTCAGTCT
GGAAGATATGCCTTTAGGTCAAAACACCGGGAGCTGGAGAGGCGTGGATC
ATTTGCTGGAAGAATATATAGTTAATCGTTGCATACCATCACTCACTTAA
GTTTCAATCAGTATGGACTTCATCTTATGCCCAATCTCTGCAAACCAAAC
TCTTTTTCACATGTATAATGATGGCCAGCCATGGCTTCATCAATGACAAA
GAAGGTAAAAAAATGTCCAAGAGCTTAGGTAATGTTGTGGATCCTCACGA
TGAGCTAGACAAGTACCCTTCAGATACCTTCAGGTATGCACATTTTATTA
CTTGTATCTAGGACAGCACCACCACTAATTATATATATCATGTTTTTATT
TATTATAAGTATTCTTTTTTTTTCTTCGTCAAGATCTATTTAATAATGTA
TATATATGCTGGGTCAAAATTGACATGATAGATGAGATGGGCTTGCACCT
GTTTCAATACATTTTTTGTTGTTGTTGTTGTTGTCTAAGTTTAAGCACAA
AGCGGAAAAAAAAAGAATGGAGCTACATATAAGCTATGTATTGCTACCTC
TGCTCTCATGTCATATGCATTCTCACTTTGGTCTTCTATTTTTCCCCCTG
CTGTGCCTGTGAGACAACATGACGCTGAAGCTGCTTCCTGAGTGAGATGA
AACCCTCTATATGTGCTATTGGAGAGTTTCATGGTCATATCTCTGGTGTT
CTTGCTCTGTAGCTCCTTCTGAATGCGAGTAGGGAGCATGTGTTCCACGC
AGCAAATTGGGGCAGCCTTCAGTTGGTGGGCGTGGTGTGGCCACGCCGCC
GGCCGTGGCCACACCATAGGGTGGTGGAGGAGGAGCAAACACTGGCTGCA
AGTCGCTCAGTGCCCCGCCCTCGGCCATCAAGCAGCTTGCTGGTGAGGCC
AATTGCCGCAGCTTGTCGTCTCCTAATACCCAACGAGGAGATGAAGAAGG
TTCGCGAGTTCTCGAGCATCCAGACAGCACTGTTTTGAACCCTGTCAAGT
TTTTCAAAATCACCGTCAGCAGCCCCCCCAATAAACAAGATTCCCGTACT
CAATCTTGGATCTCACAAAAGCCTTGTAGGCCATCATCTTGGCATGATCA
CCCTGCATATGGGCAGTTCTTCCGACAGCACCGAGCCTCTTCCGGGCCTC
CTTGGCTACTCCCTCGGCATGTAGAGACCAGTTGCCTGTTGGATCAATGG
TGAAACCCAGCGCCTCCAGCTTGTCCTTCTCTTTAACAACCACCTCCTCC
ATGGAAAGAGGGGGACGAGCTACCTTGTTCTCCGCAACCAAGCTGGTGAT
ACTCAACTCCTTGGATTTGGTAGGTGTAAACTCCACTAGCCACTCCTTGT
CAAACTCAGACAGGCGCTAAAGATCACTGCTTAGCTGTCCTGCCGCCCTC
TGCGCTTTTTGAGGCACAGAACTCCTCCCTGACTCGCTGCGGAACGTTGC
GAATGAAGAGGTCAAAGAAGAGAGCCAACTGAATAGCCCCCTGCGGCACC
CCAGACTTGATGCTCGTATGACTGGAGGTATCACTGTTGTGAATGTTGGT
CTTTGTAAAAAAATATAGTTATCAGATCTAATCAACAATTAAAAGTTTAA
CTTCAATAAATGGAGCTATCACTCTTATGACATGCAATGCTTGTTTGATC
TTAGCCTGATCTGCCGATTCAAAAGGAAACAAGAGTCTTACAACCACGTC
TCAATTGTCTGCTGCTTCCCATGTTCAACGTCATGTTCTTGCTGCTCGAC
TGCTGTTTCTCATGTTGTTCCAACATAAAATTGGTAAACTGAATTCTTTA
CTATTCGTTTTTATTGTAATTGCTTGACAAAACTAAAGGAGAGTTTTGTG
TGTAATTGTTGTGAGAGTGAAGCATGTCAAACTCTTGTATTTATTTTTCA
TTTGTTTGACCTCGTACTCACTTCCATCTCACTGAAGATTAAAGAAATAA
TCTAAAATGAAGTCTGGTATTGAGGGGGGTGTGCATGCCATGAGGGAGTT
GTGGGCAGACGACGACACCGAGGTGGTTGTGCTGGTGGATGCCTCTAATG
CCTTCAACTCTTTGGATCGCCAGGCTGCTCTCTGGAACTGTAGGGTTTTG
TGGTCTAGGGCTTCTTATTTCCTCTTCAACACTTACCGGGGCTACGCACG
CATTTTTGTGAAGGGAGTGGCGCAGCCAGTTCTCAGCAGGGAGGGGACAA
CCCAGGGGGACCCGCTGGCGATACTGATGTATGCAGTGGGTGTGCTTCCT
CTGGTGCGCAAGCTGAAGGCTGGGAAGTTCTGTGCTCAGACTTGGTACGC
CGATGATGCCTCAGCGGGAGGGAAGATGGGCCAGGTGAGGGAGTGGCTGG
ACGCCCTGTTGGAGGATGGCCCGAAGTACGGCTACTACCCAGAGCCTAGG
AAAAGCATCGCGATTGTGAAGGATTGGCGGCAGCTTGAGCGGGCAAAGCA
GGAGTTTCAGGGGCTGGGCTTGGAGTTTGTGGAGGCCTCGAGGTTTCTTG
GGGGATTCCTGGGGAAGGAAGAGGTAGTCCGCCAGCTGCTGGAAGAGAAG
GTGACGAAGTGGGTGTAGGCAGTGGAGGATCTCTCGGAGGCGGCAGTGGT
GTACCCTCAGGATGCCTACGTGTGCTTCCTCAAGTCGCTGCAGTGTGAGT
GGGGCTACGTCCAGAGGGTGGTGGAAGGGGCTGCTGCCAAGTTCAAGCCT
TTGGTCAGGGTCATTCAAGACAAGTTCTTACCTGCAGTCTTTGGGCGCGA
GTTGCAGGGCTGGGAGAAGGAGCTTGTCAAGGTGGCGCCGAAGAAGGGTG
GCTTAGGCGCCAGATGCCCTACCGAGACCGCCGAGGACGCCTTCCAGCTG
TCTGTGGAAGGGAGCAGTACTGGTGGCAGCAATGAAGGAGGGCACCATGG
TAGCTGAGGAGGATCACGATGACCAGCTGAGGAGGGTGCGGCGGGAGATG
AAGGACCGGTGGGGAGGGAGGAGGACGAGAGCACTGAGCGCCTGGTGGCG
GGCTGCCTAAGCGGGCAAGGCGGGCTTTGGAGCGGGTTCGCAAGGAAAAT
GTCTCGGGTGGCTCACAGTGGGTCCTTCACGGGAGATGGGTTTTGATCTT
CTGGCTCAGATGTTTCGTGACCGCCTTAACATGCGGCACGGGCAGGGTCT
CCAGGGGCTGCCAGCAGTCTGTGATGGGTGTGGAGAGCCTTTCAGCTTGG
AGCATGCCCTGTGCTGCAAGAAGGGGGACCTTGTGAAGAAAGGGCATGAC
CATCTGATAGATGAGAGTTGCCACCTGGCGAGCTTGGCTTATGGGGCTGG
GGTGAAGAAGGAGCCTTTCCTGAGGGATGCTAGTGGGAGGGTGCTGGACA
AGGACCTTCGGGCGGACTTCATGGCTCATAGTGTGTGGGAGAGGCAGAGG
GTGGCGTTTTTTGACAACCGCATTTTAGATGCTGACGCACCTTCTCATTT
CAACTGCAGTATGAGCTATGTGACTGCCATGCGCACCGCAGTACAGGAGA
AGAAGAAGAAATACCAGGAGCGCTGCGAGGACCTGGCTGGGAGCTTCACA
CCTTTAGTGTGCACGGTGGAGGGGGTCTTTCATAGGGAGTATATCGCTTT
CATGAAGAGGGTGGCGGCTGCGCTTTATGGAGAAATGGCATAAGCCCTAT
GGGGGTGGTGATGTGCTGGGTAAGGGTACGGCTGCAGTTTGCACTGATCC
GGGCTATGGACCTGAGACTACATGGGTCGAGGAAGGCGTTTCATGGTTTC
GGTATGATGGACGGGGCTGGTATGGGTCTGGTGTATTAGGGGTTTGAACT
AGGGAAAGAACTATATGTGTGTACTTCTGTGTGTGTTTACTGCATGTGTG
TTGGGTGAGGGAGTAGAGATGTCTTCGTGGTTGGATGGTCATTTTCATAT
TATTATTTTATTTCAAAAATTATTCGGAACCATCTAAAATTATCACCCAG
AATAATATTTGTGGACTGTTTCAACCCTGCATCACTGTTACGAGTGTAAC
AAGAGCTGAATGCTTGCTGTTTACTACTATACTATACAATACTGTATATA
TACTATGATTTAAATCTCAAAACGACTTGCATTTGGTTACATTTGTGGTC
AAGGCGGTCATCGCTTGAATGGATACTTGCTCTCTACTGCTCATCGGCCC
CACCGTTCTACCCAACTGCCAACTTTTACAAACCCAGTGTTTGCCCAATA
ATAATCTCACTTTGGTCCCGTACGGTCCTCTTCGGGGGAGCCACCCAGCA
AGCCCCCGCTCACGCATGCTGCGGGGAAAACGCCCCCTCCCCCCCCATCA
TATCTATTAGTTGAATGCACCTATCCTTGTGTATGATCACCATCCTTTTC
CCCTAGGTGGTACCTCTGCCGCGAGGCGCCGTGACGGGTCCCGAGCTCAG
CTTCAGCGAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1135:135895..142104-

>mRNA_H-akashiwo_Contig1135.4.1 ID=mRNA_H-akashiwo_Contig1135.4.1|Name=mRNA_H-akashiwo_Contig1135.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=324bp|location=Sequence derived from alignment at H-akashiwo_Contig1135:135895..142104- (Heterosigma akashiwo CCMP452)
ATGTACGTCTGGTTCGACGCGCTGACGAACTACCTCTCGGGCGTCCGCGG
GCTGGACCCCTCGGCCGGGACCGCCGCCTTCTGGCCCGCCTCCTGCCACA
TCATCGGCAAGGACATTGTCTGGTTCCACACCGTCATCTGGCCGTGCATG
CTCATGTCCGCCAACGTGCCCTTGCCCACAACTGTTTACAGCCATGGCTT
CATCAATGACAAAGAAGGTAAAAAAATGTCCAAGAGCTTAGGTAATGTTG
TGGATCCTCACGATGAGCTAGACAAGTACCCTTCAGATACCTTCAGGTGG
TACCTCTGCCGCGAGGCGCCGTGA
back to top