mRNA_H-akashiwo_Contig1134.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1134.7.1
Unique NamemRNA_H-akashiwo_Contig1134.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1134.7.1 vs. uniprot
Match: A0A7S3Y6Q9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Q9_HETAK)

HSP 1 Score: 221 bits (563), Expect = 9.560e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 RYKEYTASSSKSAWNVLSTGGFSSKKNVLREHHDLAIILRKEWDGLCKGIGCLEYGNIPKEHNANTSWKKSQAAKYEPNGDLCIKPEREARSTSSERSISTSLLIC 318
            RYKEYTASSSKSAWNVLSTGGFSSKKNVLREHHDLAIILRKEWDGLCKGIGCLEYGNIPKEHNANTSWKKSQAAKYEPNGDLCIKPEREARSTSSERSISTSLLIC
Sbjct:  215 RYKEYTASSSKSAWNVLSTGGFSSKKNVLREHHDLAIILRKEWDGLCKGIGCLEYGNIPKEHNANTSWKKSQAAKYEPNGDLCIKPEREARSTSSERSISTSLLIC 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1134.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y6Q9_HETAK9.560e-70100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1134contigH-akashiwo_Contig1134:287988..288397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size411
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.0686193-CDS-H-akashiwo_Contig1134:287987..2883081681387093.0686193-CDS-H-akashiwo_Contig1134:287987..288308Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 287988..288308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.079432-UTR-H-akashiwo_Contig1134:288308..2883971681387093.079432-UTR-H-akashiwo_Contig1134:288308..288397Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1134 288309..288397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1134.7.1prot_H-akashiwo_Contig1134.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1134 287988..288308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1134.7.1

>prot_H-akashiwo_Contig1134.7.1 ID=prot_H-akashiwo_Contig1134.7.1|Name=mRNA_H-akashiwo_Contig1134.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=107bp
RYKEYTASSSKSAWNVLSTGGFSSKKNVLREHHDLAIILRKEWDGLCKGI
GCLEYGNIPKEHNANTSWKKSQAAKYEPNGDLCIKPEREARSTSSERSIS
TSLLIC*
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mRNA from alignment at H-akashiwo_Contig1134:287988..288397+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1134.7.1 ID=mRNA_H-akashiwo_Contig1134.7.1|Name=mRNA_H-akashiwo_Contig1134.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=410bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:287988..288397+ (Heterosigma akashiwo CCMP452)
CGCTACAAAGAGTACACCGCAAGCAGTAGCAAAAGTGCTTGGAATGTTCT
GTCAACAGGAGGGTTTAGTAGCAAGAAAAATGTGCTCAGGGAACACCATG
ACCTTGCGATTATTTTGAGGAAGGAGTGGGATGGCTTATGCAAAGGAATA
GGTTGCTTAGAATATGGAAATATTCCAAAGGAGCACAATGCGAACACAAG
CTGGAAGAAAAGCCAAGCTGCAAAATACGAGCCCAATGGTGATCTCTGTA
TCAAGCCGGAGAGAGAGGCTAGATCCACCAGTAGTGAAAGATCGATCAGC
ACAAGTCTCCTCATCTGTTGATGAGGTGGAGGAGACTACTATCACAAACG
CATGTTGTTCCTATTAAAAATACATCATCCCTCGTCGTTGTGTCATATTT
CTATCAGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1134:287988..288397+

>mRNA_H-akashiwo_Contig1134.7.1 ID=mRNA_H-akashiwo_Contig1134.7.1|Name=mRNA_H-akashiwo_Contig1134.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=321bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:287988..288397+ (Heterosigma akashiwo CCMP452)
CGCTACAAAGAGTACACCGCAAGCAGTAGCAAAAGTGCTTGGAATGTTCT
GTCAACAGGAGGGTTTAGTAGCAAGAAAAATGTGCTCAGGGAACACCATG
ACCTTGCGATTATTTTGAGGAAGGAGTGGGATGGCTTATGCAAAGGAATA
GGTTGCTTAGAATATGGAAATATTCCAAAGGAGCACAATGCGAACACAAG
CTGGAAGAAAAGCCAAGCTGCAAAATACGAGCCCAATGGTGATCTCTGTA
TCAAGCCGGAGAGAGAGGCTAGATCCACCAGTAGTGAAAGATCGATCAGC
ACAAGTCTCCTCATCTGTTGA
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