mRNA_H-akashiwo_Contig1134.4.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.500e-28 Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 3
Query: 219 NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHP 545
+ E+PET IG RV +SG+L F+RLLR+DG F G L+S+GDL+ GKV+G+I V+K+ LR RA VHG+IT KS+ +DPTV+V G LNVHP
Sbjct: 25 SFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 133
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA) HSP 1 Score: 113 bits (282), Expect = 9.430e-28 Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 3
Query: 219 NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
+++D PET IG VK+ G+L FERLLR++G FEG L+SKG L+ G K++GNI VEK+ LRD+A V G+ITAK+V++DP VV GRLNV+PQAP I G+
Sbjct: 81 SIVDAEPETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAPELINEKGE 201
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.830e-27 Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = 3
Query: 108 SPVGAGYNAARGNNLEPIP------PNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
SPV N A E P P QRG+ + ++D ET IG VK+ G+L FERLLR++G F+G L+SKG L+ G K++GNI VEK+ LRD+A V G+ITAKS+++DP V+ G LNVHPQAP I +G+
Sbjct: 52 SPVRRNRNMAAARTNESPPHTPTYVPTQRGA----------KVPIIDAEAETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQAPQVIDENGE 205
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 112 bits (281), Expect = 4.010e-27 Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 3
Query: 114 VGAGYNAARGNNLEPIPPNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
GAGY+ R + N + +N+L E+PET +G V + G+L F+RLLRVDG+F+G L+S GDL+ G V+GNIQ E++ LR A+V G+IT S+ MDP V + G+LNVH QAP R+ +G+
Sbjct: 30 AGAGYHVPRRLGERELDRNPGRIEEPATYATPAPRNILAETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLEGE 184
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN) HSP 1 Score: 114 bits (285), Expect = 4.940e-26 Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 3
Query: 213 RKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDG 575
+K+LL+ PETVIG + I G L FERLLR+DG FEG LIS+GDLI GKVIGNI V++++L A ++GDIT K + MDPTVV+ G LN++P AP ++ DG
Sbjct: 351 KKSLLEMEPETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAPNKMAPDG 471
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.170e-24 Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 3
Query: 204 MYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
M ++ ET IG VK+ G+L FERLLR++G FEG LISKG L+ G +V+GNIQV+++ LRD+ + G++TAKSVR+DP ++ G LN++P AP +I G+P
Sbjct: 66 MVAPLKTIEGDAETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAPQKINLKGEP 192
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.680e-24 Identity = 68/163 (41.72%), Postives = 90/163 (55.21%), Query Frame = 3
Query: 87 DEYEVGGSPVGAGYNAAR------GNNLEPIPPNQRGSFSRESIKMYGRK-NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAP 554
DE VGGS A NAAR L+ P + ++ +K ++L+ PETVIG ++I G L FERLLR+DG FEG L+S GDLI GKVIGNI V+ ++L A ++GD+T K++ MDPTVV+ G LNV+P AP
Sbjct: 64 DEQPVGGSGFAA-VNAARQAVEDEAGALDEQPEEDDEATMEPPVEEAPQKPHILESEPETVIGETLQIEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNPFAP 225
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A485KKM1_9STRA (Aste57867_8520 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKM1_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.000e-21 Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 3
Query: 225 LDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDL-IXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
+D PET IG VK++GDL FERLLR+DG FEG L+SKG L I G+V GN+ VE++ LRD+ AKSVR+DP VV G LNV+P AP ++ G+P
Sbjct: 363 VDGEPETTIGAAVKLTGDLSFERLLRIDGQFEGKLLSKGSLVIGPKAQVTSHIEGMKEVLIAGGRVFGNVTVERLVLRDKXXXXXXXXAKSVRIDPDCVVIGTLNVNPHAPQKMNFKGEP 482
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A1V9ZZB6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZB6_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.630e-21 Identity = 62/158 (39.24%), Postives = 80/158 (50.63%), Query Frame = 3
Query: 123 GYNAA----RGNNLEPIPPNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
GYNA RG N + GS ++ K + D ET IGP VK+ G+L FERLLR++G F+G LISKG L+ G ++IGNI VE++ TAKS+R+DP VV G LNV+P AP RI G+P
Sbjct: 29 GYNAPVAPRRGRNHRATSQSPPGSPQGGRPQVAPLKTV-DGDAETTIGPAVKMRGELSFERLLRIEGEFDGRLISKGSLVVGAKGLLTGPVDGMKEVLISGGRIIGNINVERLXXXXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEP 185
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: T0RP53_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RP53_SAPDV) HSP 1 Score: 96.7 bits (239), Expect = 1.670e-21 Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 225 LDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
+D ET IG VK+ G+L FERLLR++G F+G LISKG LI G ++IGNI VE++ LR TAKS+R+DP VV G LNV+P AP RI G+P
Sbjct: 66 VDGEAETTIGVAVKMKGELSFERLLRIEGEFDGRLISKGSLIIGAKGLLTGPVEGMKEVLVSGGRIIGNINVERLVLRXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEP 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1134.4.1 >prot_H-akashiwo_Contig1134.4.1 ID=prot_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=192bp MEAPPPPHPKSKRKNKAAPRPPSHTEDDEYEVGGSPVGAGYNAARGNNLEback to top mRNA from alignment at H-akashiwo_Contig1134:87696..88888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1134.4.1 ID=mRNA_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:87696..88888+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1134:87696..88888+ >mRNA_H-akashiwo_Contig1134.4.1 ID=mRNA_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:87696..88888+ (Heterosigma akashiwo CCMP452)back to top |