mRNA_H-akashiwo_Contig1134.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1134.4.1
Unique NamemRNA_H-akashiwo_Contig1134.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.500e-28
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  219 NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHP 545
            +   E+PET IG RV +SG+L F+RLLR+DG F G L+S+GDL+                    GKV+G+I V+K+ LR RA VHG+IT KS+ +DPTV+V G LNVHP
Sbjct:   25 SFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 133          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.430e-28
Identity = 59/121 (48.76%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  219 NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
            +++D  PET IG  VK+ G+L FERLLR++G FEG L+SKG L+                    G K++GNI VEK+ LRD+A V G+ITAK+V++DP  VV GRLNV+PQAP  I   G+
Sbjct:   81 SIVDAEPETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAPELINEKGE 201          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.830e-27
Identity = 67/164 (40.85%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  108 SPVGAGYNAARGNNLEPIP------PNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
            SPV    N A     E  P      P QRG+          +  ++D   ET IG  VK+ G+L FERLLR++G F+G L+SKG L+                    G K++GNI VEK+ LRD+A V G+ITAKS+++DP  V+ G LNVHPQAP  I  +G+
Sbjct:   52 SPVRRNRNMAAARTNESPPHTPTYVPTQRGA----------KVPIIDAEAETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQAPQVIDENGE 205          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.010e-27
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  114 VGAGYNAARGNNLEPIPPNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQ 578
             GAGY+  R      +  N        +      +N+L E+PET +G  V + G+L F+RLLRVDG+F+G L+S GDL+                    G V+GNIQ E++ LR  A+V G+IT  S+ MDP V + G+LNVH QAP R+  +G+
Sbjct:   30 AGAGYHVPRRLGERELDRNPGRIEEPATYATPAPRNILAETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLEGE 184          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN)

HSP 1 Score: 114 bits (285), Expect = 4.940e-26
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  213 RKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDG 575
            +K+LL+  PETVIG  + I G L FERLLR+DG FEG LIS+GDLI                    GKVIGNI V++++L   A ++GDIT K + MDPTVV+ G LN++P AP ++  DG
Sbjct:  351 KKSLLEMEPETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAPNKMAPDG 471          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.170e-24
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  204 MYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
            M      ++   ET IG  VK+ G+L FERLLR++G FEG LISKG L+                    G +V+GNIQV+++ LRD+  + G++TAKSVR+DP  ++ G LN++P AP +I   G+P
Sbjct:   66 MVAPLKTIEGDAETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAPQKINLKGEP 192          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.680e-24
Identity = 68/163 (41.72%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   87 DEYEVGGSPVGAGYNAAR------GNNLEPIPPNQRGSFSRESIKMYGRK-NLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAP 554
            DE  VGGS   A  NAAR         L+  P     +     ++   +K ++L+  PETVIG  ++I G L FERLLR+DG FEG L+S GDLI                    GKVIGNI V+ ++L   A ++GD+T K++ MDPTVV+ G LNV+P AP
Sbjct:   64 DEQPVGGSGFAA-VNAARQAVEDEAGALDEQPEEDDEATMEPPVEEAPQKPHILESEPETVIGETLQIEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNPFAP 225          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A485KKM1_9STRA (Aste57867_8520 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKM1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.000e-21
Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  225 LDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDL-IXXXXXXXXXXXXXXXXXXXXGKVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
            +D  PET IG  VK++GDL FERLLR+DG FEG L+SKG L I                    G+V GN+ VE++ LRD+        AKSVR+DP  VV G LNV+P AP ++   G+P
Sbjct:  363 VDGEPETTIGAAVKLTGDLSFERLLRIDGQFEGKLLSKGSLVIGPKAQVTSHIEGMKEVLIAGGRVFGNVTVERLVLRDKXXXXXXXXAKSVRIDPDCVVIGTLNVNPHAPQKMNFKGEP 482          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: A0A1V9ZZB6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZB6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-21
Identity = 62/158 (39.24%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  123 GYNAA----RGNNLEPIPPNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
            GYNA     RG N      +  GS      ++   K + D   ET IGP VK+ G+L FERLLR++G F+G LISKG L+                    G ++IGNI VE++            TAKS+R+DP  VV G LNV+P AP RI   G+P
Sbjct:   29 GYNAPVAPRRGRNHRATSQSPPGSPQGGRPQVAPLKTV-DGDAETTIGPAVKMRGELSFERLLRIEGEFDGRLISKGSLVVGAKGLLTGPVDGMKEVLISGGRIIGNINVERLXXXXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEP 185          
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Match: T0RP53_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RP53_SAPDV)

HSP 1 Score: 96.7 bits (239), Expect = 1.670e-21
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  225 LDESPETVIGPRVKISGDLEFERLLRVDGTFEGTLISKGDLIXXXXXXXXXXXXXXXXXXXXG-KVIGNIQVEKIDLRDRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP 581
            +D   ET IG  VK+ G+L FERLLR++G F+G LISKG LI                    G ++IGNI VE++ LR         TAKS+R+DP  VV G LNV+P AP RI   G+P
Sbjct:   66 VDGEAETTIGVAVKMKGELSFERLLRIEGEFDGRLISKGSLIIGAKGLLTGPVEGMKEVLVSGGRIIGNINVERLVLRXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEP 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1134.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKE5_9STRA3.500e-2849.54Polymer-forming cytoskeletal-domain-containing pro... [more]
A0A5D6Y579_9STRA9.430e-2848.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0VZS1_9STRA2.830e-2740.85Uncharacterized protein AlNc14C3G400 n=1 Tax=Albug... [more]
A0A6H5JN16_9PHAE4.010e-2738.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y5F7_AURAN4.940e-2648.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6G0WCC1_9STRA1.170e-2441.73Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3ZTD0_9STRA1.680e-2441.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485KKM1_9STRA1.000e-2145.83Aste57867_8520 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZZB6_9STRA1.630e-2139.24Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0RP53_SAPDV1.670e-2145.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1134contigH-akashiwo_Contig1134:87696..88888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009035549.1
PFAMsBactofilin
Model size582
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.85e-27
EggNOG OGsCOG1664@1|root,2RXV0@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-11_001120.1
DescriptionPolymer-forming cytoskeletal
Cds size576
COG categoryM
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1134.4.1prot_H-akashiwo_Contig1134.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1134 87701..88888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.3337781-UTR-H-akashiwo_Contig1134:87695..877001681387093.3337781-UTR-H-akashiwo_Contig1134:87695..87700Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1134 87696..87700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387093.3452039-CDS-H-akashiwo_Contig1134:87700..877931681387093.3452039-CDS-H-akashiwo_Contig1134:87700..87793Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 87701..87793 +
1681387093.3550832-CDS-H-akashiwo_Contig1134:87929..879621681387093.3550832-CDS-H-akashiwo_Contig1134:87929..87962Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 87930..87962 +
1681387093.367008-CDS-H-akashiwo_Contig1134:88090..882971681387093.367008-CDS-H-akashiwo_Contig1134:88090..88297Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 88091..88297 +
1681387093.376081-CDS-H-akashiwo_Contig1134:88419..885421681387093.376081-CDS-H-akashiwo_Contig1134:88419..88542Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 88420..88542 +
1681387093.3856027-CDS-H-akashiwo_Contig1134:88768..888881681387093.3856027-CDS-H-akashiwo_Contig1134:88768..88888Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1134 88769..88888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1134.4.1

>prot_H-akashiwo_Contig1134.4.1 ID=prot_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=192bp
MEAPPPPHPKSKRKNKAAPRPPSHTEDDEYEVGGSPVGAGYNAARGNNLE
PIPPNQRGSFSRESIKMYGRKNLLDESPETVIGPRVKISGDLEFERLLRV
DGTFEGTLISKGDLIIGPNGCVKGDIKDMQELLIDGKVIGNIQVEKIDLR
DRAVVHGDITAKSVRMDPTVVVCGRLNVHPQAPLRIGTDGQP
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mRNA from alignment at H-akashiwo_Contig1134:87696..88888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1134.4.1 ID=mRNA_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:87696..88888+ (Heterosigma akashiwo CCMP452)
GAACAATGGAAGCGCCTCCTCCTCCCCACCCCAAATCAAAAAGGAAGAAC AAAGCCGCTCCAAGACCTCCTTCACACACAGAAGACGATGAATATGAGGT GAAAATTAACCGCAATAAAATTAATCGGCCATAGGTAACGGATGATACCG AAAAATACAAACACTAGCACTTTCAAAACTACGTTGCTACCTCGTGCACA ACCCAAATATTCTTCTTTTCCTCATGATCATCAGGTTGGTGGATCTCCTG TTGGTGCAGGATATAATGTGAGCCAGTCTCGAGCATCCTGCTGGCTATGA TAGCAGCGTTTTTGCTACTGTTCAAGGGCTTGTTGCAGAGTTCAGATTGC AACAATGTTACCAAAATTCATCATTTTGTGTTTTTTTTTTTCTAGGCTGc aCGTGGAAACAACCTGGAGCCGATTCCTCCTAACCAAAGAGGAAGCTTTT CTAGGGAGAGCATCAAGATGTATGGGAGGAAAAACCTGCTTGATGAGTCT CCCGAGACAGTGATTGGACCTCGAGTGAAAATCAGTGGTGACCTTGAGTT TGAACGGCTCCTAAGAGTGGACGGAACTTTTGAAGGCACCCTCATCTCAA AGGTTTGAACCAATAGGGAATGGAGCTCCAGAAAGATGCATACATATTAT AGGCAGGCTTCCAATTATCTCGCCCCTGTGATCTTACACCAAGCCCTTTT TGGTTCAATATTTTGGAACAACAGGGCGACCTCATCATTGGCCCAAATGG GTGTGTGAAAGGAGATATCAAAGACATGCAGGAGTTATTGATTGATGGCA AAGTGATTGGTAACATACAAGTAGAAAAAATTGATCTTCGTGACCGGGTA AGTTTGCTAGATTTTTACTTGAGCTGATGGGAGTATAGTATACTACTGCT TCCTGGTTGTCGGTTCAGTTGTTTGTGATATTTATTGTGATGGTTTCAGT GCGCAAACTTTCACCATGTATTTCGTATTTCCCCCCACGCGACCGCACCC ACCCACGCAACCTCGGCGTGTGTTTTCTCCCTCTCCCCGCCACGGCCCGG GGGGGGGGGCGGGGGCTCGCCAGGCGGTGGTCCACGGCGACATCACGGCC AAGTCCGTGCGCATGGACCCCACGGTGGTGGTCTGCGGGCGGCTGAACGT GCACCCGCAGGCCCCGCTGCGCATCGGGACGGACGGCCAGCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1134:87696..88888+

>mRNA_H-akashiwo_Contig1134.4.1 ID=mRNA_H-akashiwo_Contig1134.4.1|Name=mRNA_H-akashiwo_Contig1134.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=576bp|location=Sequence derived from alignment at H-akashiwo_Contig1134:87696..88888+ (Heterosigma akashiwo CCMP452)
ATGGAAGCGCCTCCTCCTCCCCACCCCAAATCAAAAAGGAAGAACAAAGC
CGCTCCAAGACCTCCTTCACACACAGAAGACGATGAATATGAGGTTGGTG
GATCTCCTGTTGGTGCAGGATATAATGCTGcaCGTGGAAACAACCTGGAG
CCGATTCCTCCTAACCAAAGAGGAAGCTTTTCTAGGGAGAGCATCAAGAT
GTATGGGAGGAAAAACCTGCTTGATGAGTCTCCCGAGACAGTGATTGGAC
CTCGAGTGAAAATCAGTGGTGACCTTGAGTTTGAACGGCTCCTAAGAGTG
GACGGAACTTTTGAAGGCACCCTCATCTCAAAGGGCGACCTCATCATTGG
CCCAAATGGGTGTGTGAAAGGAGATATCAAAGACATGCAGGAGTTATTGA
TTGATGGCAAAGTGATTGGTAACATACAAGTAGAAAAAATTGATCTTCGT
GACCGGGCGGTGGTCCACGGCGACATCACGGCCAAGTCCGTGCGCATGGA
CCCCACGGTGGTGGTCTGCGGGCGGCTGAACGTGCACCCGCAGGCCCCGC
TGCGCATCGGGACGGACGGCCAGCCG
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