mRNA_H-akashiwo_Contig1129.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig1129.4.1
Unique Name	mRNA_H-akashiwo_Contig1129.4.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

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BLAST of mRNA_H-akashiwo_Contig1129.4.1 vs. uniprot
Match: A0A7S4D6Z7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Z7_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.780e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:    1 EPIVEVPFHLCITTDGAKRSWLSEIISENKWLEDSQDELLALFLMAEKDNPESEYAPYLR 180
            EPIVEVPFHLCITTDGAKRSWLSEIISENKWLEDSQDELLALFLMAEKDNPESEYAPYLR
Sbjct:   58 EPIVEVPFHLCITTDGAKRSWLSEIISENKWLEDSQDELLALFLMAEKDNPESEYAPYLR 117

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1129.4.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1129.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A7S4D6Z7_HETAK	1.780e-32	100.00	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1129	contig	H-akashiwo_Contig1129:184070..187307 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	6500.XP_005090791.1
Preferred name	SETD3
PFAMs	Rubis-subs-bind,SET
Model size	199
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00003,RC00060,RC00181,RC00496
KEGG ko	ko:K19199
KEGG Reaction	R03875,R04866,R04867
KEGG Pathway	ko00310,map00310
Hectar predicted targeting category	other localisation
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0001085,GO:0001102,GO:0001558,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008283,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0033613,GO:0034968,GO:0036211,GO:0040008,GO:0042054,GO:0042800,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0046975,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051147,GO:0051149,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons	3
Evalue	0.000104
EggNOG OGs	KOG1337@1\|root,KOG1337@2759\|Eukaryota,38GWP@33154\|Opisthokonta,3BDB6@33208\|Metazoa,3CXWT@33213\|Bilateria
EC	2.1.1.43
Description	Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SETD3 subfamily
Cds size	198
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387091.2055323-CDS-H-akashiwo_Contig1129:184069..184153	1681387091.2055323-CDS-H-akashiwo_Contig1129:184069..184153	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1129 184070..184153 -
1681387091.2170856-CDS-H-akashiwo_Contig1129:184435..184501	1681387091.2170856-CDS-H-akashiwo_Contig1129:184435..184501	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1129 184436..184501 -
1681387091.225649-CDS-H-akashiwo_Contig1129:187259..187307	1681387091.225649-CDS-H-akashiwo_Contig1129:187259..187307	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1129 187260..187307 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1129.4.1	prot_H-akashiwo_Contig1129.4.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig1129 184070..187307 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig1129:184070..187307-
coding sequence from alignment at H-akashiwo_Contig1129:184070..187307-

protein sequence of mRNA_H-akashiwo_Contig1129.4.1

>prot_H-akashiwo_Contig1129.4.1 ID=prot_H-akashiwo_Contig1129.4.1|Name=mRNA_H-akashiwo_Contig1129.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
EPIVEVPFHLCITTDGAKRSWLSEIISENKWLEDSQDELLALFLMAEKDN
PESEYAPYLRQANWT*

mRNA from alignment at H-akashiwo_Contig1129:184070..187307-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig1129.4.1 ID=mRNA_H-akashiwo_Contig1129.4.1|Name=mRNA_H-akashiwo_Contig1129.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3238bp|location=Sequence derived from alignment at H-akashiwo_Contig1129:184070..187307- (Heterosigma akashiwo CCMP452)
GAGCCAATTGTTGAGGTCCCGTTCCACCTTTGTATCACAACAGACGGGGT
GAGCTGCAAGTAAATTTTGTTGCTACATCTTACTTTTTATACTGGGGGAA
AAAGTATATATATAGTCATATTTCAGTTAAAATACCACAAGGTTGTAATA
AATGGATCGCATATGGAATCATAGCTGGTGGGTCTCCACCACTTGTCCAA
ACTTTACCAGTTAAAACTGCACCAGCCAGTCTTGTGCTTGCATTGATGTT
CTCATTTGAGGAACAAAAGGTGGTAAAAAAATCTAGTTGTCTTCTTTTTA
AACGGGTCCTTAAATTCAAATTTTCTATGTCTGACCTGAAGTCACCTTTA
CCACACGCCGTAGTTACTTCTACATTTTCTTTCTGAAAAGAAGGTCTTTG
TGGTTTTTCTTGTGGTAGCTGTTTTTTGGGTTTGTCGAAGGGATAAAACA
AACTTTTTTTTTTAAATATCTGTCAATACACAAACATGCATGTGCAAGGA
CAAAGCTCTTTTCAAGGAAAATGTAAGATTGAAATAACTATTTGTGAGGT
GTTGGATTTAACAGAAAAGCCGCTTCCATTATCAGTGAGTGATTGAAGTC
GATACCAACAGCAATCGATCGCAAAAACCACATATATGTGATTCCAAACA
ATTCATTGACACCGGGCAGTTTAACCTTCTTAGTACCAGCGCTTGCACCA
CGTATGGGGTCTTTTTATCCACGAGCACCTATGCTTGCCCCAATATGGGC
TCTGGAGGCCTTTTTGGGCAGATCAAGCTTACATGCAAAGTCTGGTTGAA
CAATGGTGTACATATGTTAAAAATTAGATTGACCATGACCCGTTCTAGGG
CAGTATAGGACCCCCTTAGCCCTCTCTGAGGCAGTGGTTCAAAATGCTGA
AGACGACAACCACAGTGTTGATATATTATTGATCAAAGGTACATGATGTG
TCAAAAGAACATGATATATCAGCTCATTTTTTTGGAACACGACCTGATAA
CAGAATGTGATATGTCATGTTCCAAAATAATGGTGTATATTGTGTTCCTT
CGCTGACCTAATTTTCAGGCCCTTATTATATAGGAAGTAAGAACAGAGAC
CATATCACCTACAAAATTTTAGGGTCAAACTCCAAGTGGTTTGGTCACAA
CCTTCAAAAAACCCATTTTTTGACCTGATTTTGAGGCCTTCACAAAGGCA
GCAAGAACAGACCATATCACCTCTGGCTAGTGGCCTCACATACAGGAAAA
TGACATCAAAACGCACTCCAACACCAATTTTTGACCCAAAAAGATGGGGT
TCTGAAAATAACATATTATTATCATGTTCCTCTTGATATGTCATGTTTCA
CCTATACTGGACTGACCACCTTAAATTACTGCTCCTCCAACAGACTAGGC
ACTGTAGCACCACCCGAGCTGGGTTGTGTGTATACATTAGGTACAAGGTC
CTTGCTGCGAACGAGAATGCTCGATTCACCAGCAAGTGATTTGCACGAAC
TACTTCTGCTGCCGCTGCTCCTGCTGCTGCTGCTGACGACAACAACAAGT
GCGGTCACGTGAGGCGCCGGCCTAAGCTCCTACTACTGTTCAGCACTGGC
AAACACTACAACAAGAGTGTTGTAGCCTTGTACTGTTCAGCACTGGCAAA
CACTACAACAAGAGTGCTGTAGCCTTGTAGCTCCATGAAACAACCACAGC
ATCATTGCCGTTTAGCACCGGGGCTCCACTGCCCCGCACCACCGCGGCAC
TCTGTGATTGTGACACCCGCGCTCACGATACCTTCAGTGGATGTGTGCGC
AACGAGTATGGCAAGGAGTGGCTACTAGAGTTTGAACCCACCAAATCCCA
GGAGCTGATCATCACCAACTTGGTTGCAGAAAACAAGATGGCTCACCCTT
CTCTATCCATGGGGGGAGTGGTTGTTGAAGAGAAGGAGAAGCTGGAGGCA
CTGGGTTCACCAGTGATCCACGAGGTAACTGGTCCCTGCATGCCGAGGCA
GTAGCAAAGGAGGCCCGTGAGGCTCGTGCCATCAGGAGGATCGCCCACAT
GCTGGATGATCATGCCAAGATGATGGCTTCAGGCTTTTGTGAGGTCAAAG
ATTGAGTATATAGCAATCTCTTTCATCTACTGCGGGGCGGCCGAGGGTCA
TCTCGGAAAACTTGACAGGGTTCAAAGCAGTGCTGCCTTGATGCTCAAGG
ACTCGTCCGCCTTCTTCATCCCCTCGCTGGAAAGTAGGAGGCAGACTGCA
GCAGTTGGCCTCACCTGCATGCGGCTTGATGGCCGAGGGTGGGGGGCGCT
GAGTGACGTGCAGCCAGTGATTGCTCCTCCTATGATATGCAAGTCCACAA
GATCCTCTGATAGACTAGCAGGACAGCGGGCGGCGGTGCCACAGCACCCT
CATCAACTGAAGACTGCCTCAATCCGCCACACGGGGAACAGGCACCACTT
ACAGAAGGATCTACAGAGCAAGAATCCCAGAAACATGGAACAGCCTTTTT
TAGTCTTGACCATGAAACTCTACAAGAGCAGCGCATAGAGTGTTTCATCC
CACTCAGAAAGCAGCTTCAACATCATATTATATTTCAGTCACAGCAGAAG
TCTTTTAAAAAGGAAAGAGAGAGAGAAAAAAAGGGGGGTGCAAATGACAT
GAGCAGATGTAGGAACAGCCTGTCTGGACTATTTTCTTTACTTTGTGCTT
AAACATAGACACACACCAAAAAAAAATGTATGTGTGGCACCTCATACATG
ATTGCAGTTCATTTCAAACAAAAAGCACCAACATTTTCAGCATTTTCTGT
TTCCAGGCAAAGCGAAGCTGGCTTTCTGAAATCATATCAGAAAATAAATG
GCTTGAAGACTCTCAAGATGAGGTAAGGTAGAATTTTGGGGTCTTGCTTA
CACAAATAAAACAACCTACGCCTAGTTATTGACAAGGTGTGTTGATGAGG
GCCAGCCAAGAATTTCGGCTGGTGGTATGCTAGAAACAACGCTGTCCGCG
TCAAATCTTATAATGATTTAAATCCTTTGATGAGCAATATATACATCTGT
GTCTGATTTTTTGCTGATCTCCTCTAGCATTCCTGGGCCATCAATTTTCA
TATGAGAAACATTGAGGAGTATGTTGTCTTTTCCTCCTTAACATCGTCCA
CCAGCTGCTAGCTTTGTTTCTGATGGCAGAAAAGGATAATCCAGAATCTG
AGTATGCTCCATATTTGAGGCAAGCCAACTGGACATAA

Coding sequence (CDS) from alignment at H-akashiwo_Contig1129:184070..187307-

>mRNA_H-akashiwo_Contig1129.4.1 ID=mRNA_H-akashiwo_Contig1129.4.1|Name=mRNA_H-akashiwo_Contig1129.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig1129:184070..187307- (Heterosigma akashiwo CCMP452)
GAGCCAATTGTTGAGGTCCCGTTCCACCTTTGTATCACAACAGACGGGGC
AAAGCGAAGCTGGCTTTCTGAAATCATATCAGAAAATAAATGGCTTGAAG
ACTCTCAAGATGAGCTGCTAGCTTTGTTTCTGATGGCAGAAAAGGATAAT
CCAGAATCTGAGTATGCTCCATATTTGAGGCAAGCCAACTGGACATAA