mRNA_H-akashiwo_Contig1125.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1125.1.1
Unique NamemRNA_H-akashiwo_Contig1125.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A6V2UDE2_HETAK (Uracil-DNA glycosylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2UDE2_HETAK)

HSP 1 Score: 324 bits (831), Expect = 1.040e-109
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1
Query:    1 RSSLHFPGYSARASFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            RSSLHFPGYSARA FIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ
Sbjct:   15 RSSLHFPGYSARALFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 178          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI001B079D65 (Uracil-DNA glycosylase n=1 Tax=Niastella sp. TaxID=1869183 RepID=UPI001B079D65)

HSP 1 Score: 93.6 bits (231), Expect = 1.540e-20
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            +D  W  VL  EFSKPYF  +VGF+   R +GK IYPP  ++F+A N  P D++KVV++GQDPYHGPNQ
Sbjct:    5 IDDSWKAVLKDEFSKPYFGEIVGFLKMERAAGKTIYPPGGLIFNAFNLTPFDNVKVVLLGQDPYHGPNQ 73          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A2G0CF40_9BACT (Uracil-DNA glycosylase n=2 Tax=Lewinella TaxID=70994 RepID=A0A2G0CF40_9BACT)

HSP 1 Score: 91.7 bits (226), Expect = 9.120e-20
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            ++  W   L+ EFSKPYF TL+GFI   +  GK IYPP +++F+A N  PLD +KVVI+GQDPYH P Q
Sbjct:    8 IEPSWKAALAEEFSKPYFRTLIGFIKQEKADGKTIYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 76          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI000E23A774 (uracil-DNA glycosylase n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI000E23A774)

HSP 1 Score: 91.7 bits (226), Expect = 9.120e-20
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            ++  W   LS EFSKPYF+TL+GF+   +  GK IYPP +++F+A N  PLD +KVVI+GQDPYH P Q
Sbjct:    8 IEPSWKEALSEEFSKPYFKTLIGFLKQEKADGKTIYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 76          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A1B9LH42_9GAMM (Uracil-DNA glycosylase n=1 Tax=Gilliamella apicola TaxID=1196095 RepID=A0A1B9LH42_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 1.910e-19
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  298 WHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            WH V+  E  KPYF+ ++ F+   RT+GKIIYPPQ+ VF+A    P D IKVVI+GQDPYHGPNQ
Sbjct:    7 WHEVIGAEKEKPYFQQIMQFVKSERTNGKIIYPPQHDVFNAFRFTPFDQIKVVILGQDPYHGPNQ 71          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A836CBN7_9STRA (Uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  280 MPL-DGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            MPL D  W   LS EF KPYF  L+ F+  +  +GK IYPP++ VF ALN CPLD ++VVI+GQDPYHGP Q
Sbjct:    1 MPLTDPVWSQALSPEFGKPYFVKLLAFLAKQAAAGKAIYPPKDKVFHALNTCPLDRVRVVILGQDPYHGPGQ 72          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A1E5XDJ1_9PSED (Uracil-DNA glycosylase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1E5XDJ1_9PSED)

HSP 1 Score: 89.7 bits (221), Expect = 5.380e-19
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  262 MVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            M D   + L+  W   L  EF+KPY + L  F+   + +GK IYPP+ ++FSALN  PL S+KVVIIGQDPYHGP Q
Sbjct:    1 MTDNDRISLEAGWKAALREEFAKPYMQQLSEFLRAEKAAGKEIYPPRELIFSALNSTPLASVKVVIIGQDPYHGPGQ 77          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI001911FDBA (uracil-DNA glycosylase n=1 Tax=Entomomonas sp. F2A TaxID=2785331 RepID=UPI001911FDBA)

HSP 1 Score: 89.7 bits (221), Expect = 5.480e-19
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            L+  W  VL  EF+KPY   L  F+   + +GKIIYP  +++F+ALN  PLD++KVVI+GQDPYHGPNQ
Sbjct:    7 LETSWKNVLQDEFTKPYMTALGDFLRAEKAAGKIIYPKGSLIFNALNSTPLDAVKVVILGQDPYHGPNQ 75          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A840E0P2_9BACT (Uracil-DNA glycosylase n=2 Tax=Lewinella aquimaris TaxID=1835722 RepID=A0A840E0P2_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 8.120e-19
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            ++  W   L  EFSKPYF TL+GFI   +  GK +YPP +++F+A N  PLD +KVVI+GQDPYH P Q
Sbjct:   54 IEPSWKKALEPEFSKPYFNTLIGFIKQEKADGKTVYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 122          
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A7S9DZ11_9ALTE (Uracil-DNA glycosylase n=1 Tax=Salinimonas marina TaxID=2785918 RepID=A0A7S9DZ11_9ALTE)

HSP 1 Score: 89.0 bits (219), Expect = 8.170e-19
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  298 WHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
            WH VL  E  KPYF+TL+  +   R +GK IYPP+  VF+AL   PLD+IKVVI+GQDPYHGPNQ
Sbjct:    3 WHDVLGEEKQKPYFQTLMEKVEQERAAGKTIYPPREDVFNALKVTPLDNIKVVILGQDPYHGPNQ 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V2UDE2_HETAK1.040e-10999.39Uracil-DNA glycosylase n=1 Tax=Heterosigma akashiw... [more]
UPI001B079D651.540e-2056.52Uracil-DNA glycosylase n=1 Tax=Niastella sp. TaxID... [more]
A0A2G0CF40_9BACT9.120e-2055.07Uracil-DNA glycosylase n=2 Tax=Lewinella TaxID=709... [more]
UPI000E23A7749.120e-2055.07uracil-DNA glycosylase n=1 Tax=Lewinella sp. IMCC3... [more]
A0A1B9LH42_9GAMM1.910e-1960.00Uracil-DNA glycosylase n=1 Tax=Gilliamella apicola... [more]
A0A836CBN7_9STRA2.470e-1958.33Uracil-DNA glycosylase n=1 Tax=Tribonema minus Tax... [more]
A0A1E5XDJ1_9PSED5.380e-1951.95Uracil-DNA glycosylase n=4 Tax=Pseudomonadaceae Ta... [more]
UPI001911FDBA5.480e-1955.07uracil-DNA glycosylase n=1 Tax=Entomomonas sp. F2A... [more]
A0A840E0P2_9BACT8.120e-1953.62Uracil-DNA glycosylase n=2 Tax=Lewinella aquimaris... [more]
A0A7S9DZ11_9ALTE8.170e-1961.54Uracil-DNA glycosylase n=1 Tax=Salinimonas marina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1125contigH-akashiwo_Contig1125:176820..177311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1439940.BAY1663_01406
Preferred nameung
PFAMsUDG
Model size494
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03648
KEGG Pathwayko03410,ko05340,map03410,map05340
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004844,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0097510,GO:0140097,GO:1901360
Exons1
Evalue1.73e-19
EggNOG OGsCOG0692@1|root,COG0692@2|Bacteria,1MV80@1224|Proteobacteria,1RPDH@1236|Gammaproteobacteria
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-05_005280.1
EC3.2.2.27
DescriptionExcises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
Cds size492
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.4895031-CDS-H-akashiwo_Contig1125:176819..1773111681387090.4895031-CDS-H-akashiwo_Contig1125:176819..177311Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1125 176820..177311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1125.1.1prot_H-akashiwo_Contig1125.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1125 176820..177311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1125.1.1

>prot_H-akashiwo_Contig1125.1.1 ID=prot_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=164bp
RSSLHFPGYSARASFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFF
TAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRW
HGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIK
VVIIGQDPYHGPNQ
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mRNA from alignment at H-akashiwo_Contig1125:176820..177311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1125.1.1 ID=mRNA_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig1125:176820..177311+ (Heterosigma akashiwo CCMP452)
CGCTCAAGCCTACACTTTCCTGGGTACTCAGCCCGAGCATCATTCATTGA TTCCCGGGTTATCCAGAGCCAGTGTTTTCTGTATCCTTCTCTCCAAACAA TGTCGTCGCAGAAAAAAAGGAAATCCCAGACTAGCCTTACAAACTTCTTC ACGGCCCCAGTATCAGGCAAGAAAAAAAGTAAAATCAGGGGAAGTCATGA CGAACAGGGTGCAGAAGAAAAAAGGGAAGAGGAAACAAAGCAAGAAGTAG TTGGTGGAGAAATGGTGGATGTCCATGGCATGCCGCTTGATGGCCGCTGG CATGGAGTTTTGTCGACCGAATTTTCAAAACCATACTTCGAAACACTAGT TGGGTTTATACACGGGCGCCGTACGAGTGGTAAAATTATCTATCCGCCAC AAAACATGGTGTTTTCTGCCCTCAATGAGTGCCCGTTGGACTCTATAAAA GTAGTGATCATTGGACAAGACCCATACCACGGTCCCAACCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1125:176820..177311+

>mRNA_H-akashiwo_Contig1125.1.1 ID=mRNA_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig1125:176820..177311+ (Heterosigma akashiwo CCMP452)
CGCTCAAGCCTACACTTTCCTGGGTACTCAGCCCGAGCATCATTCATTGA
TTCCCGGGTTATCCAGAGCCAGTGTTTTCTGTATCCTTCTCTCCAAACAA
TGTCGTCGCAGAAAAAAAGGAAATCCCAGACTAGCCTTACAAACTTCTTC
ACGGCCCCAGTATCAGGCAAGAAAAAAAGTAAAATCAGGGGAAGTCATGA
CGAACAGGGTGCAGAAGAAAAAAGGGAAGAGGAAACAAAGCAAGAAGTAG
TTGGTGGAGAAATGGTGGATGTCCATGGCATGCCGCTTGATGGCCGCTGG
CATGGAGTTTTGTCGACCGAATTTTCAAAACCATACTTCGAAACACTAGT
TGGGTTTATACACGGGCGCCGTACGAGTGGTAAAATTATCTATCCGCCAC
AAAACATGGTGTTTTCTGCCCTCAATGAGTGCCCGTTGGACTCTATAAAA
GTAGTGATCATTGGACAAGACCCATACCACGGTCCCAACCAG
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