mRNA_H-akashiwo_Contig1125.1.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A6V2UDE2_HETAK (Uracil-DNA glycosylase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2UDE2_HETAK) HSP 1 Score: 324 bits (831), Expect = 1.040e-109 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 1
Query: 1 RSSLHFPGYSARASFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
RSSLHFPGYSARA FIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ
Sbjct: 15 RSSLHFPGYSARALFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFTAPVSGKKKSKIRGSHDEQGAEEKREEETKQEVVGGEMVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 178
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI001B079D65 (Uracil-DNA glycosylase n=1 Tax=Niastella sp. TaxID=1869183 RepID=UPI001B079D65) HSP 1 Score: 93.6 bits (231), Expect = 1.540e-20 Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
+D W VL EFSKPYF +VGF+ R +GK IYPP ++F+A N P D++KVV++GQDPYHGPNQ
Sbjct: 5 IDDSWKAVLKDEFSKPYFGEIVGFLKMERAAGKTIYPPGGLIFNAFNLTPFDNVKVVLLGQDPYHGPNQ 73
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A2G0CF40_9BACT (Uracil-DNA glycosylase n=2 Tax=Lewinella TaxID=70994 RepID=A0A2G0CF40_9BACT) HSP 1 Score: 91.7 bits (226), Expect = 9.120e-20 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
++ W L+ EFSKPYF TL+GFI + GK IYPP +++F+A N PLD +KVVI+GQDPYH P Q
Sbjct: 8 IEPSWKAALAEEFSKPYFRTLIGFIKQEKADGKTIYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 76
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI000E23A774 (uracil-DNA glycosylase n=1 Tax=Lewinella sp. IMCC34183 TaxID=2248762 RepID=UPI000E23A774) HSP 1 Score: 91.7 bits (226), Expect = 9.120e-20 Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
++ W LS EFSKPYF+TL+GF+ + GK IYPP +++F+A N PLD +KVVI+GQDPYH P Q
Sbjct: 8 IEPSWKEALSEEFSKPYFKTLIGFLKQEKADGKTIYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 76
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A1B9LH42_9GAMM (Uracil-DNA glycosylase n=1 Tax=Gilliamella apicola TaxID=1196095 RepID=A0A1B9LH42_9GAMM) HSP 1 Score: 90.9 bits (224), Expect = 1.910e-19 Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 298 WHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
WH V+ E KPYF+ ++ F+ RT+GKIIYPPQ+ VF+A P D IKVVI+GQDPYHGPNQ
Sbjct: 7 WHEVIGAEKEKPYFQQIMQFVKSERTNGKIIYPPQHDVFNAFRFTPFDQIKVVILGQDPYHGPNQ 71
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A836CBN7_9STRA (Uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN7_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19 Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 280 MPL-DGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
MPL D W LS EF KPYF L+ F+ + +GK IYPP++ VF ALN CPLD ++VVI+GQDPYHGP Q
Sbjct: 1 MPLTDPVWSQALSPEFGKPYFVKLLAFLAKQAAAGKAIYPPKDKVFHALNTCPLDRVRVVILGQDPYHGPGQ 72
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A1E5XDJ1_9PSED (Uracil-DNA glycosylase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1E5XDJ1_9PSED) HSP 1 Score: 89.7 bits (221), Expect = 5.380e-19 Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 262 MVDVHGMPLDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
M D + L+ W L EF+KPY + L F+ + +GK IYPP+ ++FSALN PL S+KVVIIGQDPYHGP Q
Sbjct: 1 MTDNDRISLEAGWKAALREEFAKPYMQQLSEFLRAEKAAGKEIYPPRELIFSALNSTPLASVKVVIIGQDPYHGPGQ 77
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: UPI001911FDBA (uracil-DNA glycosylase n=1 Tax=Entomomonas sp. F2A TaxID=2785331 RepID=UPI001911FDBA) HSP 1 Score: 89.7 bits (221), Expect = 5.480e-19 Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
L+ W VL EF+KPY L F+ + +GKIIYP +++F+ALN PLD++KVVI+GQDPYHGPNQ
Sbjct: 7 LETSWKNVLQDEFTKPYMTALGDFLRAEKAAGKIIYPKGSLIFNALNSTPLDAVKVVILGQDPYHGPNQ 75
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A840E0P2_9BACT (Uracil-DNA glycosylase n=2 Tax=Lewinella aquimaris TaxID=1835722 RepID=A0A840E0P2_9BACT) HSP 1 Score: 90.1 bits (222), Expect = 8.120e-19 Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 286 LDGRWHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
++ W L EFSKPYF TL+GFI + GK +YPP +++F+A N PLD +KVVI+GQDPYH P Q
Sbjct: 54 IEPSWKKALEPEFSKPYFNTLIGFIKQEKADGKTVYPPGSLIFNAYNTTPLDQVKVVILGQDPYHNPGQ 122
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Match: A0A7S9DZ11_9ALTE (Uracil-DNA glycosylase n=1 Tax=Salinimonas marina TaxID=2785918 RepID=A0A7S9DZ11_9ALTE) HSP 1 Score: 89.0 bits (219), Expect = 8.170e-19 Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 298 WHGVLSTEFSKPYFETLVGFIHGRRTSGKIIYPPQNMVFSALNECPLDSIKVVIIGQDPYHGPNQ 492
WH VL E KPYF+TL+ + R +GK IYPP+ VF+AL PLD+IKVVI+GQDPYHGPNQ
Sbjct: 3 WHDVLGEEKQKPYFQTLMEKVEQERAAGKTIYPPREDVFNALKVTPLDNIKVVILGQDPYHGPNQ 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1125.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1125.1.1 >prot_H-akashiwo_Contig1125.1.1 ID=prot_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=164bp RSSLHFPGYSARASFIDSRVIQSQCFLYPSLQTMSSQKKRKSQTSLTNFFback to top mRNA from alignment at H-akashiwo_Contig1125:176820..177311+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1125.1.1 ID=mRNA_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig1125:176820..177311+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1125:176820..177311+ >mRNA_H-akashiwo_Contig1125.1.1 ID=mRNA_H-akashiwo_Contig1125.1.1|Name=mRNA_H-akashiwo_Contig1125.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig1125:176820..177311+ (Heterosigma akashiwo CCMP452)back to top |