mRNA_H-akashiwo_Contig1124.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1124.6.1
Unique NamemRNA_H-akashiwo_Contig1124.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A7S4DEE9_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEE9_HETAK)

HSP 1 Score: 216 bits (549), Expect = 9.270e-65
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1
Query:    1 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTRG 339
            DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT+G
Sbjct:  284 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKG 396          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A7S3Y8R3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R3_HETAK)

HSP 1 Score: 216 bits (549), Expect = 9.660e-64
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1
Query:    1 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTRG 339
            DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT+G
Sbjct:  284 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTKG 396          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A0A9XTP4_LYGHE (Peptide chain release factor 2 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XTP4_LYGHE)

HSP 1 Score: 125 bits (315), Expect = 2.420e-32
Identity = 58/108 (53.70%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   10 LPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            LP  +++ ++ + I +VAH++KGSAG SGTDS  W+ +LL +G  S RLR+A+A+L  +MSN ++EW  + ALL RRG+ LDK PG+RPIG+GEVLQRI AK + +VT
Sbjct:  254 LPTMKDIDVSGDHIAKVAHSLKGSAGPSGTDSETWRDMLLRFGAHSSRLRDAIAALVRRMSNGIMEWDKIKALLARRGVALDKNPGVRPIGVGEVLQRICAKTMVYVT 361          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A6H5FX45_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FX45_9HEMI)

HSP 1 Score: 124 bits (311), Expect = 8.320e-32
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            D+ LPV  +V I+   I + AH +KGSAG SGTD   W+++LL YGN S RLREAVASL   ++N V+EW  + A+L RRG+ LDK PG+RPIG+GEVLQRI AK +A VT
Sbjct:  250 DENLPVLVDVNISETHISKAAHRLKGSAGPSGTDGDQWRNMLLRYGNHSLRLREAVASLTRFLANSVVEWDQIKAILARRGVALDKCPGVRPIGVGEVLQRICAKTMAMVT 360          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A0A9XG89_LYGHE (Mediator of RNA polymerase II transcription subunit 13 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XG89_LYGHE)

HSP 1 Score: 122 bits (305), Expect = 8.540e-32
Identity = 59/108 (54.63%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   10 LPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            LP+  ++ +T+  IE++A  ++GSAG SGTD+  WK++LL YG  S +LREAVASL  +++N V+EWS + ALL RRG+ LDK PG+RPIG+GE+LQRI AK +A +T
Sbjct:   22 LPLMVDIDVTSNHIEKIARRLRGSAGPSGTDAEQWKNMLLRYGAHSAQLREAVASLVRRLANGVIEWSRIKALLARRGVALDKCPGVRPIGVGELLQRICAKTMALIT 129          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A6H5GR62_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GR62_9HEMI)

HSP 1 Score: 126 bits (317), Expect = 1.720e-31
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   10 LPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            LP++ +V I+A  IER AH + GSAG SGTD+  WK+LLL YGN S RLREAVASLA  ++N V++WS + ALL RRG+ LDK+PG+RPIG+GEVL RI AK +A +T
Sbjct:   98 LPLQVDVNISANHIERSAHRLGGSAGPSGTDAEQWKNLLLRYGNHSVRLREAVASLARLLANGVVDWSRIKALLARRGVALDKQPGVRPIGVGEVLHRICAKTMATLT 205          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A8D8V8S3_9HEMI (Hypothetical protein n=5 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8V8S3_9HEMI)

HSP 1 Score: 126 bits (316), Expect = 2.370e-31
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   10 LPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            LP+   V ITA+ IE+VA  + G AG SGTDS  WKS L+ YGN S RLR+++ASL  +++NE++ W  + ALL RRGI LDK PG+RPIGIGEVLQR++AKA+A  T
Sbjct:  296 LPIMIHVDITAQHIEKVARQISGGAGPSGTDSDQWKSFLIRYGNHSTRLRDSIASLTRRIANEIVNWDSIRALLARRGIALDKCPGVRPIGIGEVLQRVMAKAMATAT 403          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A7S3Y2Y7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Y7_HETAK)

HSP 1 Score: 118 bits (295), Expect = 2.400e-31
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:  133 YGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVTRG 339
            +G AS RL EAVA LATKMSNEV+EWSD+SALL RRG+MLDKKPGLRPIG+GEVLQRILAK VAWVT+G
Sbjct:    1 HGKASERLEEAVADLATKMSNEVMEWSDISALLARRGLMLDKKPGLRPIGVGEVLQRILAKLVAWVTKG 69          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A0A9YI10_LYGHE (Methionyl-tRNA formyltransferase (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YI10_LYGHE)

HSP 1 Score: 116 bits (290), Expect = 3.510e-31
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    4 QPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            + LP   +V +T   I   AH +KGSAG SGTD+  W+ +LL YG  S RLREAVA+L   ++N +++W  + ALL RRG+ LDK+PG+RPIGIGEVLQRI AK +A +T
Sbjct:    9 EELPTLLDVDVTESHIAVSAHRLKGSAGPSGTDAEQWRGMLLRYGAHSSRLREAVAALTRSLANGIVDWDRIRALLARRGVALDKRPGVRPIGIGEVLQRICAKTMAMLT 118          
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Match: A0A0A9Z6I3_LYGHE (Methionyl-tRNA formyltransferase (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z6I3_LYGHE)

HSP 1 Score: 117 bits (293), Expect = 3.550e-31
Identity = 57/111 (51.35%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASGRLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQRILAKAVAWVT 333
            D+ LP+  +V I+A  IE+ AH +KGSAG SGTD+  W+S+LL +G  S RLREAVASL   ++N +++W  + ALL RRG+ ++K PG+RP+G+GEVL R+ AK +A +T
Sbjct:   15 DETLPLMLDVQISANHIEKSAHGLKGSAGPSGTDADQWRSMLLRFGTHSERLREAVASLTRYLANGIVDWDKIRALLARRGVAINKHPGVRPLGVGEVLLRLCAKTIATLT 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1124.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DEE9_HETAK9.270e-6599.12Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8R3_HETAK9.660e-6499.12Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A0A9XTP4_LYGHE2.420e-3253.70Peptide chain release factor 2 (Fragment) n=1 Tax=... [more]
A0A6H5FX45_9HEMI8.320e-3257.66Uncharacterized protein (Fragment) n=1 Tax=Nesidio... [more]
A0A0A9XG89_LYGHE8.540e-3254.63Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5GR62_9HEMI1.720e-3161.11Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A8D8V8S3_9HEMI2.370e-3158.33Hypothetical protein n=5 Tax=Cacopsylla melanoneur... [more]
A0A7S3Y2Y7_HETAK2.400e-3182.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0A9YI10_LYGHE3.510e-3153.64Methionyl-tRNA formyltransferase (Fragment) n=1 Ta... [more]
A0A0A9Z6I3_LYGHE3.550e-3151.35Methionyl-tRNA formyltransferase (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1124contigH-akashiwo_Contig1124:251675..252019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15704761
PFAMsRVT_1
Model size345
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.74e-26
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.429849-CDS-H-akashiwo_Contig1124:251674..2520191681387090.429849-CDS-H-akashiwo_Contig1124:251674..252019Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1124 251675..252019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1124.6.1prot_H-akashiwo_Contig1124.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1124 251675..252019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1124.6.1

>prot_H-akashiwo_Contig1124.6.1 ID=prot_H-akashiwo_Contig1124.6.1|Name=mRNA_H-akashiwo_Contig1124.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=115bp
DQPLPVKEEVVITAEVIERVAHAVKGSAGVSGTDSVVWKSLLLGYGNASG
RLREAVASLATKMSNEVLEWSDLSALLVRRGIMLDKKPGLRPIGIGEVLQ
RILAKAVAWVTRGM*
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mRNA from alignment at H-akashiwo_Contig1124:251675..252019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1124.6.1 ID=mRNA_H-akashiwo_Contig1124.6.1|Name=mRNA_H-akashiwo_Contig1124.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:251675..252019+ (Heterosigma akashiwo CCMP452)
GATCAGCCGCTGCCAGTGAAAGAGGAAGTGGTGATCACTGCTGAGGTGAT TGAGCGGGTAGCCCATGCAGTCAAGGGGTCAGCAGGTGTCTCTGGGACGG ATAGTGTAGTTTGGAAATCTTTGCTCCTGGGCTATGGCAATGCTAGTGGG AGGCTGAGGGAGGCGGTTGCGAGCCTGGCCACGAAGATGTCAAACGAGGT CCTAGAGTGGAGTGATCTGTCGGCGCTATTGGTTCGTAGAGGCATCATGC TGGATAAGAAGCCAGGGCTTAGGCCTATTGGGATTGGGGAGGTGTTGCAG AGGATCCTGGCCAAGGCGGTTGCGTGGGTTACTAGGGGGATGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1124:251675..252019+

>mRNA_H-akashiwo_Contig1124.6.1 ID=mRNA_H-akashiwo_Contig1124.6.1|Name=mRNA_H-akashiwo_Contig1124.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:251675..252019+ (Heterosigma akashiwo CCMP452)
GATCAGCCGCTGCCAGTGAAAGAGGAAGTGGTGATCACTGCTGAGGTGAT
TGAGCGGGTAGCCCATGCAGTCAAGGGGTCAGCAGGTGTCTCTGGGACGG
ATAGTGTAGTTTGGAAATCTTTGCTCCTGGGCTATGGCAATGCTAGTGGG
AGGCTGAGGGAGGCGGTTGCGAGCCTGGCCACGAAGATGTCAAACGAGGT
CCTAGAGTGGAGTGATCTGTCGGCGCTATTGGTTCGTAGAGGCATCATGC
TGGATAAGAAGCCAGGGCTTAGGCCTATTGGGATTGGGGAGGTGTTGCAG
AGGATCCTGGCCAAGGCGGTTGCGTGGGTTACTAGGGGGATGTGA
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