mRNA_H-akashiwo_Contig1124.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1124.1.1
Unique NamemRNA_H-akashiwo_Contig1124.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1124contigH-akashiwo_Contig1124:100648..101458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.3290353-CDS-H-akashiwo_Contig1124:100647..1007191681387090.3290353-CDS-H-akashiwo_Contig1124:100647..100719Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1124 100648..100719 +
1681387090.3393836-CDS-H-akashiwo_Contig1124:101355..1014571681387090.3393836-CDS-H-akashiwo_Contig1124:101355..101457Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1124 101356..101457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1124.1.1prot_H-akashiwo_Contig1124.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1124 100648..101457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1124.1.1

>prot_H-akashiwo_Contig1124.1.1 ID=prot_H-akashiwo_Contig1124.1.1|Name=mRNA_H-akashiwo_Contig1124.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
QGKAPAFCVRLLRRQGPGAKASFKKFKKFARDYGAEFQFGFYVDVHEFSQ
MKPKQEGF
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mRNA from alignment at H-akashiwo_Contig1124:100648..101458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1124.1.1 ID=mRNA_H-akashiwo_Contig1124.1.1|Name=mRNA_H-akashiwo_Contig1124.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=811bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:100648..101458+ (Heterosigma akashiwo CCMP452)
CAGGGCAAGGCGCCGGCCTTCTGCGTGCGCCTGCTGCGGAGGCAGGGCCC
CGGGGCCAAGGCCAGCTTCAAGGTGGGCGGAGGGCAAGGTCACGGGGAGG
GGGGGGGGTACGGAAGAAGCTGCGGTTGCCCTCCAGACCAGACCGCGACG
CCTGCGCGCTGTCCCTTGCCCCCGCCACTCTCTCTCTCTCTCTTTGTGTG
TGTCAGTCGCTACTGCGTTTTTTCTCCTCCTTACTGCTGCGGCCGCTTAT
TGCTAGCCTCCTATCTAGGTAcCCTTTTTTGTTTTGCTCACCTTGTTGGT
GAAGAATATTAAAAATTTAAAAAGGAGTATTAACAATAATTAGTCCTCGT
AATAATATCTGTGCAAGAAACTTTCGTGTGACTAGTCTTATTACTACTTT
TCAGGCCTCCTGATGATGTTGTATAATAGTGAGTGTTTCTACAACTTCCT
GGAGTTTTCCCATTGTTATTACATGAAACAAAAAATGGTGGTTTTTTATA
GTAGGGTATACTACACTGGGCCCCATAACCTACAAAATTAAAAAAGGATA
CAACCATGGTTGGAGTTTCGAGTTGCTCCATTCCCCCATCAATCATCAAT
CATGTTTAAATGTGTTTTGTAGGGGTGCTGGTGGCTCATGCCGGCTAATC
AAAACTGTCCTTACCATCAAGATGACTTTACTTGTATATCTGTTTTGGTC
TGTTTCAGAAATTCAAGAAGTTTGCAAGGGACTATGGTGCAGAGTTCCAG
TTTGGTTTCTATGTGGATGTTCATGAGTTCAGCCAGATGAAGCCCAAGCA
GGAGGGCTTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1124:100648..101458+

>mRNA_H-akashiwo_Contig1124.1.1 ID=mRNA_H-akashiwo_Contig1124.1.1|Name=mRNA_H-akashiwo_Contig1124.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:100648..101458+ (Heterosigma akashiwo CCMP452)
CAGGGCAAGGCGCCGGCCTTCTGCGTGCGCCTGCTGCGGAGGCAGGGCCC
CGGGGCCAAGGCCAGCTTCAAGAAATTCAAGAAGTTTGCAAGGGACTATG
GTGCAGAGTTCCAGTTTGGTTTCTATGTGGATGTTCATGAGTTCAGCCAG
ATGAAGCCCAAGCAGGAGGGCTTT
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