mRNA_H-akashiwo_Contig1122.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1122.8.1
Unique NamemRNA_H-akashiwo_Contig1122.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1122.8.1 vs. uniprot
Match: A0A7S4D9J7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9J7_HETAK)

HSP 1 Score: 213 bits (542), Expect = 6.020e-67
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:   37 MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA 342
            MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA
Sbjct:    1 MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA 102
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BLAST of mRNA_H-akashiwo_Contig1122.8.1 vs. uniprot
Match: A0A7S3XZE0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE0_HETAK)

HSP 1 Score: 213 bits (542), Expect = 3.140e-65
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:   37 MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA 342
            MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA
Sbjct:    1 MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRSTNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIWTA 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1122.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4D9J7_HETAK6.020e-67100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XZE0_HETAK3.140e-65100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1122contigH-akashiwo_Contig1122:376449..377089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size343
Hectar predicted targeting categorychloroplast
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.0507832-CDS-H-akashiwo_Contig1122:376448..3764811681387090.0507832-CDS-H-akashiwo_Contig1122:376448..376481Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 376449..376481 -
1681387090.0611122-CDS-H-akashiwo_Contig1122:376780..3770531681387090.0611122-CDS-H-akashiwo_Contig1122:376780..377053Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 376781..377053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.071312-UTR-H-akashiwo_Contig1122:377053..3770891681387090.071312-UTR-H-akashiwo_Contig1122:377053..377089Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1122 377054..377089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1122.8.1prot_H-akashiwo_Contig1122.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1122 376449..377053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1122.8.1

>prot_H-akashiwo_Contig1122.8.1 ID=prot_H-akashiwo_Contig1122.8.1|Name=mRNA_H-akashiwo_Contig1122.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
MGHFVGTQKFWMFICVSALLSCNVDAFQNPVPAHAATTSAHIRHRLSFRS
TNGAPSLSAPGYSITGKRSLRQGPSRVKTTLNVSPGSILSTLHGDPWYIW
TA
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mRNA from alignment at H-akashiwo_Contig1122:376449..377089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1122.8.1 ID=mRNA_H-akashiwo_Contig1122.8.1|Name=mRNA_H-akashiwo_Contig1122.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=641bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:376449..377089- (Heterosigma akashiwo CCMP452)
GGAGGATTGGAGAGGAGAGGAGTTTGGCTTTAGAAAATGGGGCATTTCGT
CGGGACCCAGAAGTTCTGGATGTTCATTTGTGTGTCGGCTCTACTGTCGT
GCAATGTCGACGCTTTCCAAAACCCTGTCCCTGCTCATGCAGCTACCACA
TCGGCCCATATAAGGCATCGCCTTTCGTTTCGAAGCACGAATGGTGCCCC
TTCTTTGAGTGCCCCAGGCTATTCCATCACCGGGAAAAGATCTCTCAGGC
AGGGTCCCTCAAGAGTAAAAACAACATTAAATGTTAGCCCTGGAAGTATA
CTATCAACGGTGAGGGTGGACTTGTCAAGTGGTATCTATAGTCGTCACTC
TTCTTTGAAACTCTGACACTCCTTTGATAACAATCGGTGAATCATGGAGG
TGTTAGCGTTCACTTATCGCTGACACACGATTGCATTATGATGGCCAAGG
AAAATTTTCCCCTCTCTTTCTATTTTGTTTCCAAGACAAACCGGTAATAT
GCATAACATTCAAACCCCAATAATAGTTTAGTAACGATAATTATTGTTGA
TATATATAATCATCATCATCACCAAACATCCCCAAACATCCTTTTTTTGA
CACCACAGTTGCATGGTGATCCATGGTACATTTGGACAGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1122:376449..377089-

>mRNA_H-akashiwo_Contig1122.8.1 ID=mRNA_H-akashiwo_Contig1122.8.1|Name=mRNA_H-akashiwo_Contig1122.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:376449..377089- (Heterosigma akashiwo CCMP452)
ATGGGGCATTTCGTCGGGACCCAGAAGTTCTGGATGTTCATTTGTGTGTC
GGCTCTACTGTCGTGCAATGTCGACGCTTTCCAAAACCCTGTCCCTGCTC
ATGCAGCTACCACATCGGCCCATATAAGGCATCGCCTTTCGTTTCGAAGC
ACGAATGGTGCCCCTTCTTTGAGTGCCCCAGGCTATTCCATCACCGGGAA
AAGATCTCTCAGGCAGGGTCCCTCAAGAGTAAAAACAACATTAAATGTTA
GCCCTGGAAGTATACTATCAACGTTGCATGGTGATCCATGGTACATTTGG
ACAGCA
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