mRNA_H-akashiwo_Contig1122.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1122.4.1
Unique NamemRNA_H-akashiwo_Contig1122.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1122.4.1 vs. uniprot
Match: A0A7S3Y110_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y110_HETAK)

HSP 1 Score: 537 bits (1384), Expect = 7.040e-191
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1 
Query:   37 MAEPEVTGTLTINILEARQLQAVEKTQSGFYVEVQIGDTAKEFTVRKDAENLQFHEQFVFNGANSIIPVQLVVHCHDRDGKDLKVGSAVIEKTKWNGETRWVMLENRRKAFAGEVLVSLSFDRAAVALRPPFSNVAKVAERTGNLVAPADAYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLLSFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLLVCSHPVQRRFVRPALHKALDYPTVSRALIKAA 882
            MAEPEVTGTLTINILEARQLQAVEKTQSGFYVEVQIGDTAKEFTVRKDAENLQFHEQFVFNGANSIIPVQLVVHCHDRDGKDLKVGSAVIEKTKWNGETRWVMLENRRKAFAGEVLVSLSFDRAAVALRPPFSNVAKVAERTGNLVAPADAYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLLSFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLLVCSHPVQRRFVRPALHKALDYPTVSRALIKAA
Sbjct:    1 MAEPEVTGTLTINILEARQLQAVEKTQSGFYVEVQIGDTAKEFTVRKDAENLQFHEQFVFNGANSIIPVQLVVHCHDRDGKDLKVGSAVIEKTKWNGETRWVMLENRRKAFAGEVLVSLSFDRAAVALRPPFSNVAKVAERTGNLVAPADAYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLLSFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLLVCSHPVQRRFVRPALHKALDYPTVSRALIKAA 282
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BLAST of mRNA_H-akashiwo_Contig1122.4.1 vs. uniprot
Match: H6WNF3_9STRA (Lipid droplet surface protein n=1 Tax=Nannochloropsis sp. CCMP1779 TaxID=1149776 RepID=H6WNF3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.350e-10
Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:  421 RPPFSNVAKVAERTGNLVAPADAYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLLSFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLLVCSHPVQRRFVRPALHKALDYPTVSRALIK 876
            + PF  VA ++ +TGN+  P D  I + +DF     + +   T + +A K         +   ++  G ++LS +  +++C+ +PA++FFP+TIF  V ++      L+ L PVA V  W+L+ S P+Q + V PAL K L    V++ L+K
Sbjct:   23 KQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTV--KTKVDKAPK---------VNPYLLIAGGLVLSCI--ISMCLLVPAVIFFPVTIFLGVATS----FALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLK 157
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BLAST of mRNA_H-akashiwo_Contig1122.4.1 vs. uniprot
Match: W7TWF7_9STRA (Lipid droplet surface protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWF7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.170e-8
Identity = 56/172 (32.56%), Postives = 87/172 (50.58%), Query Frame = 1 
Query:  370 AGEVLVSLSFDRAAVALRP---PFSNVAKVAERTGNLVAPADAYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLLSFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLLVCSHPVQRRFVRPALHKALDYPTVSRALIK 876
            AG V+ S S       ++P   PF  VA ++++TG +  P D  I + LDF     T++   T + +A K    L    IAA +  +  V +S L        IPA+LFFP+TIF  + ++      L+ L P   +VAW+L+ S P+Q + V P L K L    +++ L+K
Sbjct:   12 AGPVMTSSSATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSV--KTQVDKAPKVNPYLL---IAAGLFLSCVVSISLL--------IPAILFFPVTIFLGIATS----FALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLK 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1122.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3Y110_HETAK7.040e-191100.00Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
H6WNF3_9STRA4.350e-1031.58Lipid droplet surface protein n=1 Tax=Nannochlorop... [more]
W7TWF7_9STRA2.170e-832.56Lipid droplet surface protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1122contigH-akashiwo_Contig1122:222469..226765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1153
Hectar predicted targeting categoryother localisation
Exons8
Cds size849
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1122.4.1prot_H-akashiwo_Contig1122.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1122 222737..226729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.1450171-UTR-H-akashiwo_Contig1122:222468..2227361681387090.1450171-UTR-H-akashiwo_Contig1122:222468..222736Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1122 222469..222736 -
1681387090.2299888-UTR-H-akashiwo_Contig1122:226729..2267651681387090.2299888-UTR-H-akashiwo_Contig1122:226729..226765Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1122 226730..226765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.1549037-CDS-H-akashiwo_Contig1122:222736..2228951681387090.1549037-CDS-H-akashiwo_Contig1122:222736..222895Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 222737..222895 -
1681387090.164366-CDS-H-akashiwo_Contig1122:223849..2239871681387090.164366-CDS-H-akashiwo_Contig1122:223849..223987Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 223850..223987 -
1681387090.1755867-CDS-H-akashiwo_Contig1122:224705..2248461681387090.1755867-CDS-H-akashiwo_Contig1122:224705..224846Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 224706..224846 -
1681387090.1844153-CDS-H-akashiwo_Contig1122:225402..2255111681387090.1844153-CDS-H-akashiwo_Contig1122:225402..225511Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 225403..225511 -
1681387090.1928928-CDS-H-akashiwo_Contig1122:225653..2258141681387090.1928928-CDS-H-akashiwo_Contig1122:225653..225814Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 225654..225814 -
1681387090.2016869-CDS-H-akashiwo_Contig1122:226091..2261081681387090.2016869-CDS-H-akashiwo_Contig1122:226091..226108Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 226092..226108 -
1681387090.2106473-CDS-H-akashiwo_Contig1122:226438..2264991681387090.2106473-CDS-H-akashiwo_Contig1122:226438..226499Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 226439..226499 -
1681387090.2202458-CDS-H-akashiwo_Contig1122:226666..2267291681387090.2202458-CDS-H-akashiwo_Contig1122:226666..226729Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 226667..226729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1122.4.1

>prot_H-akashiwo_Contig1122.4.1 ID=prot_H-akashiwo_Contig1122.4.1|Name=mRNA_H-akashiwo_Contig1122.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=283bp
MAEPEVTGTLTINILEARQLQAVEKTQSGFYVEVQIGDTAKEFTVRKDAE
NLQFHEQFVFNGANSIIPVQLVVHCHDRDGKDLKVGSAVIEKTKWNGETR
WVMLENRRKAFAGEVLVSLSFDRAAVALRPPFSNVAKVAERTGNLVAPAD
AYIEQGLDFCTRALTALASSTYLARARKWGSKLERHHIAALVMANGSVLL
SFLGTVAVCVTIPALLFFPITIFFSVTSAVFLAMTLMLLVPVASVVAWLL
VCSHPVQRRFVRPALHKALDYPTVSRALIKAA*
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mRNA from alignment at H-akashiwo_Contig1122:222469..226765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1122.4.1 ID=mRNA_H-akashiwo_Contig1122.4.1|Name=mRNA_H-akashiwo_Contig1122.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4297bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:222469..226765- (Heterosigma akashiwo CCMP452)
CCAATAAAACAGTTATACCTAGATCTCACACGCAATATGGCTGAACCAGA
AGTCACCGGCACCCTGACGATAAACATTCTCGAAGCGAGACAACTGCAGG
TCAGAGTTGATTTTCTTGTCCTTCTCACTATGGTTCCAAAGTTATTATCT
CATACTCTCTTTGGCACCCTCTTCTGATGCTGTCAATGTCCGGAGGCGGG
ACGCTACTTTCTCATGGCCCGATGTACACCAATAGAATACTCTTGTCTGC
AATTTCTACTTCCTAGGCCGTCGAGAAGACTCAGTCCGGTTTCTATGTTG
AAGTCCAGATTGGAGACACTGCCAAAGGTGAACGCTTTTATTGAGGCCGG
TGAACGAATCAATATTAGGCATAAAACCGGGAAAAATAGTTCAGTTGGGG
TATAAGCACCTCTGCGCATATCCTTTACATTCTGTTTCTTTTTTTTTGTC
AATATCTCTGCTTTTGTAGTCGCTGGGGGGGACTGTTTATTACGGAGATG
ATATGTACTACGTGATGATTTATTAAATTATATGTGCTATATTTGTTTTT
TTTTTCTTTACTACTGTTATTGGCCTCTTTGCATATATCCTTTTGGCATT
CTGTTTTTTGTTTTTGTCTTGTTGAAACACCTGCTCCTGCTGTGGCCTGG
GAGGCAGAGTTCACAGTCCGGAAGGTGACCTCTTGATGTACATGGAGTAG
ATGTAGCAGTAAATACGCTCATGCCTGAAGAGGAAAATAAAGAATATCCC
ACCTCACTAACACTGACTGGCCGTGTAAAAATTGCACTGGACTGAAGCTT
TTTCTTTGTGTATGGAGTAGATGTAGCAGTAAATACGCTCATGCCTGAAG
AGGAAAATAAATAATATCCCACCTCACTACACTGACTGACCGTGTAAAAA
TTGCACTGGACTGAAGCCTTTTCCTTGTGTTCTCTGTCAATAACACAACA
GGATGCTGAAAACCTCCAATTTCACGAGCAGTTTGTTTTCAATGGAGCCA
ACTCAATAATCCCAGTGCAGCTTGTTGTTCACTGTCATGATAGGGATGGC
AAAGATTTGAAAGTAGGATCTGCAGTAATTGAAAAGACAAAATGGAACGG
AGAAACTCGCTGGTACGATTTTATTTTATTTGCTCTAAGACTGGCTTAAC
ATTGTCCGTCGCCAGATAGAGATAAGTTTTAACTAGTAGTATCTTCTTTG
CAAAGAGATAGTGTTGTTCAAATATCCGTGCTTGCCGATTCCCCTCTGCT
TTAGGGTAATGCTAGAAAACCGGCGTAAGGCGTTTGCGGGCGAAGTGCTA
GTCTCGCTCTCCTTTGACCGTGCTGCAGTTGCGCTGCGCCCTCCTTTCAG
CAATGTAGCAAAGGTTTGGCATGCTGTATGACTTTTTTTTTGGCCTTTGG
AATCAAACCTGTGCTCTCTGTCATGGGCGATACTGTATGTGGCTGATTCG
GCTGGCCACATTCCAGGCATTACCCACACCCACCGCTGCATTGCTATTTT
TCTTTGTAGTATAATTCATCTATGCCATCACGCCACAGAGGCCATGACAT
CTTGAAGCAGGATGAATAAGAAGGGCAAATCTTTAGTTCTGCACGAGAAA
GAATATAAGGACAGATCTTCTGACTGGAGGAAATGTCCTGTATATTGAGC
AACCTGTGCTCTTTGTCATGGCCTATATTATGGCTGGTCGTGTTATCATT
ACATATATATTATGTAGGTATATTCATGCTACATGGTCCTGGCAAAAGGA
AGTTGGGAGTGCTTCCTGTGCACATTTTAGTAAGAAAGAAAGAACAATGG
TGATGACTGTTTGACTGGAGGGAAGGCAGACCCCGGGGGTCATGTGAGCT
GGCCTGTGTTTCAATAAACTATCATGCTGCAAGCCTTGCGCGTGTCCCCC
CCCCCGTCCCCCCCCCCAGGTGGCTGAGCGCACGGGTAACCTGGTGGCCC
CGGCTGATGCGTACATTGAGCAGGGCTTGGACTTTTGCACCAGGGCTCTG
ACCGCGCTGGCCTCCAGCACTTATTTGGCACGGGCCCGCAAGTGGGGGTC
GAAGCTGGAGGTGGGGGGGGGGGGGAGAGGGGCAAAGAGATGACCCTAAA
AGTAAATTAAATGCCAATAATAAGTATAGAAGGCGAGACTGCTACAAGTC
CATTGTTGTCCGTGACAAGTTCAGGTCTGGCCAGCTGGCTGATTTCTACT
CTTATTGAGATCTTTTAGGGCATCACCATTTCTCTTTTATTCTATTGTTT
TTTGTTCCACTCCCAACATTGCTTTCTGCGGTTCGTCCGATTGTATTCTC
GCCCAGCATTATAAAATAGAATGGGCAGCTGGTCATGTATGTGCTGATGA
TACTTTCAAAACTTTGTTGACCACCGTTGCTACTCCTCATGTACCCCACG
TAACCTTTCTGTCCCGCAGTGATCACTGCCAGGGTTTAACAAAATTCCCT
TATGGAAAATGTGCCATTTTTGCTGTACAACAGGATTTTTTGGGGAAATC
CCCCCTCTGTACACATCTTCCTCTTCTTTTAGGGGGTTTAGGAGCAAAAA
AATCAACATTTTGGGGGGGAATTTCCGGGCAAAGCAATTTAAAAATTCCC
GTTTCCCGCTCCAGAACGGGAAATTCCAAAATTTAGGCAGGAATTTCGTC
AAACCCTACTCACTGCATTAATTGTTCATACTACACAATTACTGTAAAAT
TGTTTTCATGCTGTTTGTGCAACACTCACTCATCACCCCCTCCCCCCTTC
CCCAAATCATTCCCACTCTCAATTGCAGAGGCACCACATTGCGGCACTGG
TGATGGCAAATGGTTCAGTCCTGCTGTCGTTTTTAGGCACGGTGGCTGTT
TGTGTGACAATCCCAGCACTGCTGTTCTTCCCTATCACCATATTCTTTTC
TGTCACATCTGCCGTGGTAAGTACTACTACCAAAATCAAAATTTTCAAAC
AATATACATGTATTAAAAAATGATGTGTGATAGGAAGATATATTCTTTCT
GTATATGTGTGTTACAATTTTCCTATTGAGTACGCCAGTACTTCTTGCAG
TCTATAAATGGCTTAATGTGAAATTATTGGATGACGGAGTTGGAATGGTG
TGGGTGCAGGCTTGGCTGTTACCACAGGCGAGTGCTGCCCTGTAGTGTGA
GTGATCACTGAGACCTTTTTGAGCTAAATAAACTATACTCGTCAAACAAC
ACCCAAGCACCGAATGGACAGCAAGACAAGGGCGGTACTCACCTCCTGGG
TTCCACCTCGCTGAGCTCCAAGCCTCCAAAAACAATAATCCACCATACCA
TCATCAAGTACTTTTCTTTTCTTTTTTTTCATCAATACTGCTACAACGAG
TGGGTCAAGCCCATTTTTTTTTTCCCGGCTACTGAAGGATTATTATACCG
TACATCATTACTTCCCATTTAGATGGAGCATAGTATGATAATCCAACGGA
ATTTTCAATGGTTGAATATTTCGGGTAGTTGGGTGACCCTGTTTCAAGAA
GGTACCAAGCCTTAGGTTGCTAAGTACCTCCCAATGGTAATTATTGGATG
ATTGGATATGAGTTCAAAGAAGCTAGAGTGGTTGATGATGAAATGCTGTG
TGGCATTGGATATTGGCAAGCAAAAGTAACTTTGAGGTAGCCAGCCCTGT
TTTGGCCGCCATTCAAGCCTATCAAAGCAACGAGTGAACAGGCTGCCGCA
GGATGAATATGTAGATAAATTAGAATAGGAGTGTAAAACCTGCTTTAGTA
TGAATAAATGAATTAGTAAGGGAGACAAAACAAATGTACAGCTGCCCTTT
TACTATCTTTGGATCCGCTCTTTTTTCACCCCCCCCCATCCCCACCCCAC
CCGGCCCCCGCCGCGCCCAGTTCCTGGCCATGACCCTGATGCTGCTGGTG
CCGGTGGCCTCGGTCGTGGCCTGGTTGCTGGTCTGCTCGCACCCGGTGCA
GCGGCGCTTTGTGCGCCCGGCCCTGCACAAGGCGCTGGACTACCCCACGG
TCTCGCGGGCGCTCATCAAGGCGGCCTGAGGACGGAATGAGGGGCCGGGC
CTGAACCCCCCGTCGTGGAGGGTGGGGGCGGCGTTTTGAAGCAGCAGCCT
GAACTCGAAAACACCCCTTCAACAAATAAGATTGAGATCAAAGTAGTATT
GACGAATGGTCGACACGAAGATGTATTCGCCTCATCATTTTCTGTAGCAG
TGGTATGCGCTGTTGATCCTTCTTTTATTTTCATATTGTGACATGTGTGT
TTTTGCCACTTTTGTCTTTTTTTCTTCTTCTTCTTTTTGATGTTGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1122:222469..226765-

>mRNA_H-akashiwo_Contig1122.4.1 ID=mRNA_H-akashiwo_Contig1122.4.1|Name=mRNA_H-akashiwo_Contig1122.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=849bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:222469..226765- (Heterosigma akashiwo CCMP452)
ATGGCTGAACCAGAAGTCACCGGCACCCTGACGATAAACATTCTCGAAGC
GAGACAACTGCAGGCCGTCGAGAAGACTCAGTCCGGTTTCTATGTTGAAG
TCCAGATTGGAGACACTGCCAAAGAGTTCACAGTCCGGAAGGATGCTGAA
AACCTCCAATTTCACGAGCAGTTTGTTTTCAATGGAGCCAACTCAATAAT
CCCAGTGCAGCTTGTTGTTCACTGTCATGATAGGGATGGCAAAGATTTGA
AAGTAGGATCTGCAGTAATTGAAAAGACAAAATGGAACGGAGAAACTCGC
TGGGTAATGCTAGAAAACCGGCGTAAGGCGTTTGCGGGCGAAGTGCTAGT
CTCGCTCTCCTTTGACCGTGCTGCAGTTGCGCTGCGCCCTCCTTTCAGCA
ATGTAGCAAAGGTGGCTGAGCGCACGGGTAACCTGGTGGCCCCGGCTGAT
GCGTACATTGAGCAGGGCTTGGACTTTTGCACCAGGGCTCTGACCGCGCT
GGCCTCCAGCACTTATTTGGCACGGGCCCGCAAGTGGGGGTCGAAGCTGG
AGAGGCACCACATTGCGGCACTGGTGATGGCAAATGGTTCAGTCCTGCTG
TCGTTTTTAGGCACGGTGGCTGTTTGTGTGACAATCCCAGCACTGCTGTT
CTTCCCTATCACCATATTCTTTTCTGTCACATCTGCCGTGTTCCTGGCCA
TGACCCTGATGCTGCTGGTGCCGGTGGCCTCGGTCGTGGCCTGGTTGCTG
GTCTGCTCGCACCCGGTGCAGCGGCGCTTTGTGCGCCCGGCCCTGCACAA
GGCGCTGGACTACCCCACGGTCTCGCGGGCGCTCATCAAGGCGGCCTGA
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