mRNA_H-akashiwo_Contig1120.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1120.6.1
Unique NamemRNA_H-akashiwo_Contig1120.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1120.6.1 vs. uniprot
Match: A0A7S4D630_HETAK (5'-nucleotidase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D630_HETAK)

HSP 1 Score: 424 bits (1090), Expect = 2.670e-147
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 2 
Query:    2 AERQQRALALLQAAHQRGQLNLRQLPQEHKSWTPLREGAEKLLQFMARTQIPVTVLSDGYTNIIAEILKAQAPQICDQYERRLPQDLVIFANSIRLDDYAGFYPSGFEGAPVSEKNLSLGEMNKVRPGLVKTQRPNLLVLGSSPEGWDLAPGFETGIILSVGFMEWTKEAASDLNKCASNYDVVIFHAKGDASFEYVLDLLGGIFPGYFSQ 634
            AERQQRALALLQAAHQRGQLNLRQLPQEHKSWTPLREGAEKLLQFMARTQIPVTVLSDGYTNIIAEILKAQAPQICDQYERRLPQDLVIFANSIRLDDYAGFYPSGFEGAPVSEKNLSLGEMNKVRPGLVKTQRPNLLVLGSSPEGWDLAPGFETGIILSVGFMEWTKEAASDLNKCASNYDVVIFHAKGDASFEYVLDLLGGIFPGYFSQ
Sbjct:  142 AERQQRALALLQAAHQRGQLNLRQLPQEHKSWTPLREGAEKLLQFMARTQIPVTVLSDGYTNIIAEILKAQAPQICDQYERRLPQDLVIFANSIRLDDYAGFYPSGFEGAPVSEKNLSLGEMNKVRPGLVKTQRPNLLVLGSSPEGWDLAPGFETGIILSVGFMEWTKEAASDLNKCASNYDVVIFHAKGDASFEYVLDLLGGIFPGYFSQ 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1120.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D630_HETAK2.670e-147100.005'-nucleotidase n=2 Tax=Heterosigma akashiwo TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1120contigH-akashiwo_Contig1120:114586..121850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size755
Hectar predicted targeting categoryother localisation
Exons6
Cds size501
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1120.6.1prot_H-akashiwo_Contig1120.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1120 115829..121732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.6974788-UTR-H-akashiwo_Contig1120:114585..1146481681387089.6974788-UTR-H-akashiwo_Contig1120:114585..114648Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1120 114586..114648 +
1681387089.7096183-UTR-H-akashiwo_Contig1120:115755..1158281681387089.7096183-UTR-H-akashiwo_Contig1120:115755..115828Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1120 115756..115828 +
1681387089.7651005-UTR-H-akashiwo_Contig1120:121732..1218501681387089.7651005-UTR-H-akashiwo_Contig1120:121732..121850Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1120 121733..121850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.7196865-CDS-H-akashiwo_Contig1120:115828..1158681681387089.7196865-CDS-H-akashiwo_Contig1120:115828..115868Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 115829..115868 +
1681387089.7275062-CDS-H-akashiwo_Contig1120:116045..1161541681387089.7275062-CDS-H-akashiwo_Contig1120:116045..116154Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 116046..116154 +
1681387089.7361333-CDS-H-akashiwo_Contig1120:116351..1164391681387089.7361333-CDS-H-akashiwo_Contig1120:116351..116439Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 116352..116439 +
1681387089.7452312-CDS-H-akashiwo_Contig1120:118740..1188221681387089.7452312-CDS-H-akashiwo_Contig1120:118740..118822Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 118741..118822 +
1681387089.7551425-CDS-H-akashiwo_Contig1120:121550..1217321681387089.7551425-CDS-H-akashiwo_Contig1120:121550..121732Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 121551..121732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1120.6.1

>prot_H-akashiwo_Contig1120.6.1 ID=prot_H-akashiwo_Contig1120.6.1|Name=mRNA_H-akashiwo_Contig1120.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=167bp
MARTQIPVTVLSDGYTNIIAEILKAQAPQICDQYERRLPQDLVIFANSIR
LDDYAGFYPSGFEGAPVSEKNLSLGEMNKVRPGLVKTQRPNLLVLGSSPE
GWDLAPGFETGIILSVGFMEWTKEAASDLNKCASNYDVVIFHAKGDASFE
YVLDLLGGIFPGYFSQ*
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mRNA from alignment at H-akashiwo_Contig1120:114586..121850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1120.6.1 ID=mRNA_H-akashiwo_Contig1120.6.1|Name=mRNA_H-akashiwo_Contig1120.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7265bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:114586..121850+ (Heterosigma akashiwo CCMP452)
CGCCGAGCGCCAGCAGCGGGCCCTCGCGCTCCTGCAGGCCGCGCACCAAC
GGGGGCAGCTCAAGTGAGAACGAGCAGGCAGACGCGACAGCATCGGTGGC
CTGGAATTCATCGTCAATACGACGACGAGGGCGGCGGCGGCGCTGGGCGG
GGGGGGCGGGCGGGgcGGGGGGCGTCTTTTGTCCGTGTGTTCCCCCGCGG
GCGACCGGCTGTTCCGGGCCGTTCCCGGGGCATCCTTTTGTGCGCCTTCC
TTCCGTGACCGGCCGTTCTGGGCTGTTGCTGGAGCCGCTGGACCATGGGA
AGTGGCTCAAGAAAATTCTGCGAGTAGGCGTGCTCAGAAAGAGTAAGCCC
CCAGATGGAAGTTAGCCCATGGATGCTAAGCACCGTATATACTTGCCACC
ATGTTTGAGCGCGTGCCCATACTGCAGATCAGTAGTAGTGAAACCAAAAC
ACAAGATGAAGCAGTAGTTATGAAATCGTGGTCATGCGAGGTGGAGAAAT
CACATATGTATTAGTTTGCCTTGGAGAACTGCATATCGCCAGCTCCCCTC
ATTCCGCTTTGCTTGGTCCTCCTCTTGCAGCTTCCATGATGATCAATCAG
TATTGTGTGTCATGCTTCACTTCACATCATTTAACTTTTCCGAACTAAAA
CTAGCAGGTAATATGTGATTTCTCCACCTCGCATGACCACGCTTTCATAA
CTACTACTTTATCTTGTGTTTCGGTTGCACTACTACTGAGCTGCAGTATG
GGCACGCGCTCAAACATGGTGGCAGGTACAGTGCTATAGCATCCATGGGC
TAACTCTATCTGGATCAAGCAAATAAGTGTCCCTCAATAGATACCCCCGT
CCAAGTAAGAATGCAGCCTTTACCCATATATATCTTATTTCCCAGGTGGA
AGGTAGTATGTATTCATCACTAAATTTCAAAACGGTGATATGTTGTCACT
TACATTTTAAAGGTTCACCTGTACCCAAATGTGTTTTGTAATTATATATG
GACTCACATTGCTTGCTCTGACTCGTGCAATATTTACACACCAACGCATG
CAGTATCTATAAAAGACGAAGAAAAGTTTTACGTATTTAATGTCCCCTGA
CAACATCCTGATCCCATTTTTCAAATAGATTTCTCTTCTATTTTTTTTTA
TGCGACTGGTGGTGATCTAGCTTGAGGCAACTGCCTCAAGAGCATAAATC
ATGGACCCCGCTGCGGGAGGGCGCGGAAAAACTTTTGCAGTTCATGGCGC
GAACACAGATCCCAGTGACGGTCCTTTCTGACGGTGGGTCCTGAAGTGCA
AATCTAAATTCATTCAGTGGCTCCTTCCTTCTGAATGAGAACCAGTGTAC
ATGCCATATATATATACGCCGCAAGGGGTGACTAGATAATGCTGTGCGCT
GCTTTCTTTCTTTTTTTTTTTTTGCCCATCGCACCGTTTGGTGGCCTTTT
TTATGTACAGGTTACACCAATATAATAGCTGAGATCTTGAAGGCCCAGGC
GCCTCAGATTTGTGACCAATACGAACGGCGATTGCCCCAGGACCTCGTAA
TATTTGCCAACAGTATCAGGTTTGAAATTTATTTTCTAAGAGTATGGGTT
TAAGTGCTTGATTTATATTTCTGATGGATTTATTATGCAACAACCCTCTT
CACATTAACCAAAGCAAAAAGTGAAGTGATTGCTCTACACATCACTCTGT
GGGGAAGCACTCAGACCTGTCTAAGAAAGTAAAAACAAATACCTTCCTCT
CCCATCTACCCACTAGACTGGACGATTACGCCGGTTTCTACCCCAGTGGT
TTTGAAGGGGCGCCCGTCAGCGAGAAAAACTTGTCCCTTGGCGAGATGAA
CAAGGTGACGTCTATGGTTAAACGGTATATATATACTTAAGACTTTGGAT
TATTTTATTAAAGCAGTGGGGAGTGGTGTGATCTTGATGTTTGAAGCAAG
GTGTCATTGATGTGCTTCCCAACTGTGAATAGTCCAGCGCTGCTGGTGGG
GATACTGAAGCAGATCTGGCTCTAGATCGAAATATGGTGCCTGTCAAAAA
ACCCTTCCCTAGAATCGCGAGTTGCAATACCTGATTGTAATTTTTTCAAT
CCTTTTCCCCACCATCTTGAAAACATAATTGTACTTTATATGTCTTATTC
CGTTGCGCCATGTAAGTTGATTGGTTTGTTGGATTGTAAAACGCCTGTCA
GGTGAATTCAATGGCAGCCTGTTCTCTTCTACTTTCCACCTGCACTCAGA
AGTTCCAGCTGCCCTTGAGCCCTGCATCTTCTATTGCTCTTTGGCCTCAT
CGCCCTCTTTCAGTTGTCTTTGCCGTAGCGACAACCCACATCCATCGATG
AGTTCATTTTCTCCACCCTGCATTTCGGGAAGGTATCGCTTGTAGAAGCA
CTAATCTTCCCCTAGATTCGAAGGACGAGTCCCTCTTCCTAATAGCACGT
TTCAAGCTTATGGAACGTATGTAACTTCCACAAACCGGCCTCATGAACAG
TAGGTAGTATTCATGTTTCAGCGTTTGCCACCTGTGGTGGATCATCGAAC
TCCTACAGCTATTGTGAGAACATTTCGCAAAGCCCCCGGTGGCATCCGTC
CGTTCCCCAAACCTGACAGGATACCTCCAAGTAACACACCAACGACAGAA
TTAGCTCCGCCAAGCCGGAGAAGTCCGAAAGTATCAAGCAACGCCAACGT
CCAAAGACAGAGGCTAATACCCGGGATCGAACTCGCATCGCAAGATTGGA
AGGCATTCTACATTTGCACCAAGAATGTGTATGATGCATTGTACCATAAT
GTTCCCTTTGGCCGCGATCGGCCGTAACGCGAGGCGAATAACTCGGATCG
GAAAACAAATGACACATTTCTATAGCAGTTTTTCGTGAAGATTCAGAAAG
AAAATATGCGAAGTGTAAATTTTGTCCCACATCCGAGATACGGGCCAACT
TTGGTCGGAGCGGATACCAAAACCTGCCCAAAACCCGCTTCAAAAATAAA
AATTTACGTTTCTAGTATTTTTTTTTTATTCTTCACGAAAAATTGCTATA
GAAATGTGTCATCAGTTTTCCGATCCAAGTTGTTCGCCTCGAGATAGCGC
GCGGATGAAATATGGCCCCGGAGCCGGGCCCGAAATAGCCCGAAAACTGA
AATCGGGCCCCGGAAACCAGAGGAAACCCGAAACCCGAAAATCCGGCTGT
TGTAGCATCTTAGCGATGCTTCAGGGATTTCAGAACTACTTTTATTTTAT
AGTGAAGATATTTCCTTGAAGAGATATGGCGCGCCAGCCTAAGGGAACAT
TATGGTACAATGCATCATATCTATAGTCAAACCTCAAATTTCCATCCCTT
CTTTTCCTTGACTGCTTGCGGAGGGGTGGGTGAAGCTTTTCCGTGTTCTT
CCGCTTCTTGGTGTTAGAAATAACCAGCCTGTGGGACTTTTTGGGCTCAA
ACTCCAGCAGTCACTCCTTGCCAAACATGTACAACCAATGGAGGTCGGTG
TCTTCGTTCCTCCCTCTCTACCTCTTTGAGAGTGAGATATCATCACAGTA
GTGGTATGCTTTCTGCAGATTTGCCTGCACACGTTGGGGAACATTCTTTA
CAAAGAGGTCAAATAGAACAGAAGGCCAGATGCCCCCCTGCGGAACGCTG
GACTTTGCTTTTCTGTGTCAAAGTCCCTCCCTCTCCTTTCCGTAGCTATA
TGTCTTGCCTGCAGCTATACACCCCTTTTCTTCAAATATAATCACCAAAA
AGTCACTTTCTCAAAAGAAGCCTTCCCGAGCACCACTATAGGACCCTTTT
TTCAAAAAATAAGTGCTCCCAGCGTCTTGTCAGCATCCCTTTTTCATGCT
TCGATTTTTCTCCCATACATTCTAGCCTAAAAATTTCGGACTCTTTTGCG
GTAAATGTTACTATATACTTGTATATATATCATGTGTTGTTTTATTTGTT
CTCTCGTCTTCCATGAGTTTTCTCACTGTCCACTCCCTTAGGTTCATAGA
CACTCCTGTCCAACAGTACAATGAGGACAGTAGAGGAAACTATTAAAGCA
TCACCCAATGATTTGGAACAAGCTTATACCGGGCCTAAACTTCTGCCAAT
ATGCCTTCACGCACAGATTGCCCCCCCACCCCCCCCCTGGTACTGGGAAT
CCCAGGTGCGCCCCGGCTTGGTGAAGACCCAACGGCCGAACCTGCTGGTG
TTGGGCAGTTCTCCCGAGGGCTGGGACCTCGCCCCCGGTGGGAATATCCC
CCCCTCCCCTCCCCTGCCCGGCCCTACGCTGCGCCGACGGGGCCCGTTAC
TGTGTCTAAAAATCACACACACAAATTAGCGAACATATTTATTTATTGTA
GCAGCAGCAGAAGAATCCACCCTACCCGGCGTACAATGTGCCAGTCCAGG
ACGAAAAGCAGAAGAGGGAGGGCAGAAAAGAGAACAAATACAATACACAC
AAATCAAAGGAGTTTGATGATGATGGTAATTACTTCTAAATACTTACTGC
ACATATTTACAGTCTGAACACATAGACGTGCCTTCAGTGATTGTACAACC
TGGCACCTCATTATCTCATGCAGCAGGTAAAGTATATAATTTTTTAATTG
GTTATAGTGACAAAAATTATACTTCTCTAGATTCCCACCTCACATGCAAA
AGACTCCGAGTTTCGGCCAATCAAGAGTATAGCAGTACTTATATACTTTT
TAATCATTAAAAAATTTCTACTTTACCTGCTTCATGAGATGATAAGGCGG
CAGGTTGTACAATCACTGAAGGCACGTCTATCTGTTCAGACTGTAAATAT
GTGCAGTAAGTATTTAGAAGTAATTTCAAGAGAGTCTGAATTCCTGATAT
CAATCATAGACCATGATGGTAATGTTAAACTCTAAGGAGCATCGCTGTAT
GTTGAGGGTTACAACGCTATCGCTTTTACCTTCATTATTAGATCACGGTC
GATCGTAAAAATCGTACGAGGTTGCTTCCGCTGGTACCTGCGGAGCTGAC
CCCTTCCCATAGAGTTTCCGGCAACGATATCTCGGCCAATTCTGATCAGA
TTTGGACAAAAAAGGGCTTGTTGAAAAGCCCAGAAGAATCCACGTCCGGA
TTGAGGGCTCCGGTTACGATTTGAGCTAGTTTTAGAATTTTTGATTAAAG
GTCTTATGTTTTGAATCGTTGACTCGACTACAAGCGGAATCGCCTTAGCC
GTCGAAGCGCCGAGCTTCACTTTTGGGCAAGGTCCCGGGTTCGAGCCCCG
GGTAGAGCACACGGTGGTCGTTTGACTCCTACGGCGAGCGCTCACCGTGC
GGAGATTCGAGATGTCCACACCTCGTAGGATTAGATCCATGCTCCGTGGA
TAGACCACAAAGTAATTAATGGAAGAATATATAGACCACAAAGCAATCAA
TGGAAGAATCATATATATTTTCAGAGAAGTGAATTAGGGCGGGCTGGTGC
CAATCCAGGAACAGTGCAACCCGTCCTCCCGTGATGAAACAAAAAAAAGT
TGATATATATAAATGTTCCTCCGTGCGATTTCCACTAACCCCGCTGTCGG
CAGCGCAAATACAGAAGGAAAAAAGAAAAGAATAAAAAAAACACAAATAT
CACAAGACTTATCCCCTCATCTTCCTCCGACCGCTGCCACCCGACTCCTT
CTGCTCTTGTTTAAGCAAGAGTAACAAGTTAGTAGCGCTCCCATATAGCC
ACCCCAGGCGTTCAGCTTCACTGCGCAGGTTGCGCCTGGGCCTTCTTGTC
CAGGTGCGAGATCCTGAGGAATCGTGGCTGTTGCCTCCAAGAAACCCTCC
CACCCTTGCCACAATTCTTGCCAAACCTCCTCACGCATTTCTGGCGAGGC
TTCACCCTTCTTTCTCCATTCTCAATGATCAGATCATTGAATGCACCCCA
GTTTGGATCAGTCCAAACTCCCTTCTTCTCCAAGTTGATCAGGCAGGCTC
CCACCCTCCTGCTTGGTCTTGTAGGCATTGATGTATAGAGATTCTTTGAT
CTTCCTCCTCTTCCAATGGTGATCGGCATCCAAGAACTGGGCATCTTCCC
ATTTGAACAGCTCCGCCCCAGTTCCCTTCTCCTTCTTCTCTCTTATTATA
CTGCGTGGTGGTGTGCATAGCCAATCATATTAGGAATTAATTGCTTATAT
TCCATCAAACAATGATCTTGGGCATTTATACATTCTCAAGATGATTGGCT
ATGATGCTTTTGATTTATTTAAGGTCCAGTCTCTGGGATAACTACTACAT
ACAGATATAATTGGATGATGAAAAATACGAAGATTTGGATATAGTTCCGT
ACGCCGTAGGAACCGAATACTAATTCCATAGACTTAGACTGGCCGTAAGA
CTTAGACTTGTTGTCGCCCCTCACAAAAGCTATGATTGCCATGAATAATG
ATGCTATACAAAGGAAGCAGACCAGGTGATGTCGAGCTTGAGAAACCCTG
AGGACAAATGAGTGATTGACCTACAGTCCAAATGCGACCGACCACTAAAA
CGGCGTGACTAACCATTTTCCTGCTGTGACTGTATTGTGACCGACCTTCT
CAAAAGCCACTGCTGACTCTGGCAAACCGTATTCGTCTGCAGATTACAAT
GATCAAGGCAGGGTATCTGCAGCTTACGGTTGGATGAAGTTGTAGAGGAG
CTTACGGTTCGGGAGAAGTATAGTTCAGTGtgtgtaTGTGTGTGTGTGTG
TGTGTGTTTGAGGAATTTTCACCATCATTATTTCATCATTACCATTTGGG
TTTATATTGTTTATGTTTTTGCTTGCTTCTCTTCTGTATTTTCTTGGTTT
GGGTAGTTGTGTATGCTCTGTGATGTTCACCAACCACATGGACAGAGAGG
CAAGGTGTATACATTATAATTGATGACCATTAAAGCATTTTATTATTATA
TATACGTATATGTATACATCATCACTGCGCCTTCTTGATTCCCACATGCT
TGTTTTTTATTTCAGGATTCGAAACTGGGATCATATTATCTGTGGGGTTT
ATGGAGTGGACAAAAGAAGCTGCCAGCGACTTGAATAAGTGTGCAAGCAA
CTATGATGTTGTTATTTTCCATGCCAAGGGCGATGCTTCCTTTGAATATG
TCCTCGACTTGCTTGGGGGTATTTTTCCTGGATACTTCAGCCAGTAGGTG
CTGGAATTAAAGATGAAAATATCTGGCTGGCTGGTGATGATAGCAGTGTA
TCATAAAAATAATAAGTAGGGTTATTATTACTTTTTCACATACTAACGAT
ATAGCGTTGTTACTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1120:114586..121850+

>mRNA_H-akashiwo_Contig1120.6.1 ID=mRNA_H-akashiwo_Contig1120.6.1|Name=mRNA_H-akashiwo_Contig1120.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=501bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:114586..121850+ (Heterosigma akashiwo CCMP452)
ATGGCGCGAACACAGATCCCAGTGACGGTCCTTTCTGACGGTTACACCAA
TATAATAGCTGAGATCTTGAAGGCCCAGGCGCCTCAGATTTGTGACCAAT
ACGAACGGCGATTGCCCCAGGACCTCGTAATATTTGCCAACAGTATCAGA
CTGGACGATTACGCCGGTTTCTACCCCAGTGGTTTTGAAGGGGCGCCCGT
CAGCGAGAAAAACTTGTCCCTTGGCGAGATGAACAAGGTGCGCCCCGGCT
TGGTGAAGACCCAACGGCCGAACCTGCTGGTGTTGGGCAGTTCTCCCGAG
GGCTGGGACCTCGCCCCCGGATTCGAAACTGGGATCATATTATCTGTGGG
GTTTATGGAGTGGACAAAAGAAGCTGCCAGCGACTTGAATAAGTGTGCAA
GCAACTATGATGTTGTTATTTTCCATGCCAAGGGCGATGCTTCCTTTGAA
TATGTCCTCGACTTGCTTGGGGGTATTTTTCCTGGATACTTCAGCCAGTA
G
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