mRNA_H-akashiwo_Contig1120.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1120.4.1
Unique NamemRNA_H-akashiwo_Contig1120.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1120.4.1 vs. uniprot
Match: A0A7S4D868_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D868_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 4.790e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  114 MAKAKKSTKLKFAVVATCIALASAQQGYGGSHPQQGQSPQPPPGQYR 254
            MAKAKKSTKLKFAVVATCIALASAQQGYGGSHPQQGQSPQPPPGQYR
Sbjct:    1 MAKAKKSTKLKFAVVATCIALASAQQGYGGSHPQQGQSPQPPPGQYR 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1120.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D868_HETAK4.790e-21100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1120contigH-akashiwo_Contig1120:74543..75047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size353
Hectar predicted targeting categorysignal peptide
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.4513075-UTR-H-akashiwo_Contig1120:74542..746551681387089.4513075-UTR-H-akashiwo_Contig1120:74542..74655Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1120 74543..74655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.4605756-CDS-H-akashiwo_Contig1120:74655..747611681387089.4605756-CDS-H-akashiwo_Contig1120:74655..74761Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 74656..74761 +
1681387089.4694512-CDS-H-akashiwo_Contig1120:74913..750471681387089.4694512-CDS-H-akashiwo_Contig1120:74913..75047Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1120 74914..75047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1120.4.1prot_H-akashiwo_Contig1120.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1120 74656..75047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1120.4.1

>prot_H-akashiwo_Contig1120.4.1 ID=prot_H-akashiwo_Contig1120.4.1|Name=mRNA_H-akashiwo_Contig1120.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
MAKAKKSTKLKFAVVATCIALASAQQGYGGSHPQQGQSPQPPPGQYRPQG
PPPPRGPPGQQQQYPQQGGPPQQQVHASG*
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mRNA from alignment at H-akashiwo_Contig1120:74543..75047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1120.4.1 ID=mRNA_H-akashiwo_Contig1120.4.1|Name=mRNA_H-akashiwo_Contig1120.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=505bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:74543..75047+ (Heterosigma akashiwo CCMP452)
GAAAAGAAGAGTCAAATTGTTGGTGGAATTCGGCCAACAGGGGAAAGTTT
GCCGAGGTCTCTGGCTTTGAGAGTTTTAATTGGCGTAAGAGAGAGCCAAA
CTCTTGAAAAATCATGGCAAAGGCCAAGAAAAGTACCAAGCTGAAGTTTG
CTGTTGTAGCAACCTGTATTGCGCTTGCCAGTGCGCAGCAAGGCTATGGA
GGTTCTCATCCTCAACAAGGTGCCAATTTCGAGCAATCAAAGAGGTTTTG
ATTGCTCTTTAACATAAAAATACATACCATGCATTGATATTTTGAATTAT
GGGAAGTATTAATCGATGACTTTCCAGCGTTTCAAGCTTTGAAACTGCGC
CTCTTCTTCTGATCGCACCAGGCCAGTCTCCCCAGCCACCACCTGGCCAG
TACCGCCCACAAGGTCCACCGCCCCCTAGAGGCCCTCCAGGACAGCAGCA
ACAGTACCCGCAGCAGGGGGGGCCACCCCAGCAACAGGTGCATGCGAGTG
GGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1120:74543..75047+

>mRNA_H-akashiwo_Contig1120.4.1 ID=mRNA_H-akashiwo_Contig1120.4.1|Name=mRNA_H-akashiwo_Contig1120.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig1120:74543..75047+ (Heterosigma akashiwo CCMP452)
ATGGCAAAGGCCAAGAAAAGTACCAAGCTGAAGTTTGCTGTTGTAGCAAC
CTGTATTGCGCTTGCCAGTGCGCAGCAAGGCTATGGAGGTTCTCATCCTC
AACAAGGCCAGTCTCCCCAGCCACCACCTGGCCAGTACCGCCCACAAGGT
CCACCGCCCCCTAGAGGCCCTCCAGGACAGCAGCAACAGTACCCGCAGCA
GGGGGGGCCACCCCAGCAACAGGTGCATGCGAGTGGGTAG
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