mRNA_H-akashiwo_Contig112.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.5.1
Unique NamemRNA_H-akashiwo_Contig112.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK)

HSP 1 Score: 232 bits (591), Expect = 1.110e-76
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 360
            MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA
Sbjct:   27 MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 146
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK)

HSP 1 Score: 210 bits (535), Expect = 6.250e-68
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    4 AGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
            A   GRGKKSQ++SSKAGLQFPVGRIGRYLK GRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRI+PRHLQLAVRNDEELNKLLGGVTI+QGGVLPNIHTVLLPKK+
Sbjct:   34 AAAGGRGKKSQSKSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKKS 149
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A7S2V3S5_9STRA (Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3S5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.210e-63
Identity = 97/110 (88.18%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:   25 KKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTK 354
            KKS T+S+KAGLQFPVGRIGR+LK+GRY+ RVGAGAPVY+AAVLEYLCAEILELAGNAARDNKK+RI+PRHLQLA+RNDEELNKLLGGVTI+QGGVLPNIH VLLPKKTK
Sbjct:    7 KKSVTKSTKAGLQFPVGRIGRFLKKGRYAPRVGAGAPVYMAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPNIHAVLLPKKTK 116
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.360e-63
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    7 GKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
            GK GRGKKS TRS+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT
Sbjct:    5 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 119
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A7R9YCM0_9STRA (Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCM0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.360e-62
Identity = 97/110 (88.18%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:   28 KSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKT 357
            KS TRSSKAGLQFPVGR+GRYLKQGRY  R+G+GAPVYLAAVLEYLCAEILELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIAQGGVLPNIH VLLPKK+K+
Sbjct:   22 KSMTRSSKAGLQFPVGRVGRYLKQGRYCDRIGSGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGNVTIAQGGVLPNIHNVLLPKKSKS 131
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.270e-62
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    7 GKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK 348
            GK GRGKKS T S+KAGLQFPVGRIGRYLKQG+++ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RI PRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH+VLLPKK
Sbjct:    5 GKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKK 118
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.090e-62
Identity = 98/115 (85.22%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    7 GKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
            GK GRGKKS TRS+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT
Sbjct:   50 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 164
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A7S0S3G4_9CHLO (Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3G4_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 3.660e-62
Identity = 96/115 (83.48%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   10 KAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTK 354
            K G GKK+Q+RS+KAGLQFPVGRI RYLK+G+Y+ R+GAGAPVYLAAVLEYLCAE+LELAGNAARDNKKTRIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIH+VLLPKK+K
Sbjct:   16 KGGSGKKAQSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLCAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELSKLLGEVTIASGGVLPNIHSVLLPKKSK 130
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.890e-62
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    7 GKAGRG-KKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKT 351
            GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH VLLPKK+
Sbjct:    5 GKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKS 120
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BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.110e-61
Identity = 101/121 (83.47%), Postives = 109/121 (90.08%), Query Frame = 1 
Query:    7 GKAGRG---KKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 360
            GK GRG   KKS ++SSKAGLQFPV R+GR+LK GRY+ RVGAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKKT +A
Sbjct:    5 GKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P7M0_HETAK1.110e-76100.00Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S3UYM8_HETAK6.250e-6892.24Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S2V3S5_9STRA3.210e-6388.18Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=9461... [more]
D7FWI9_ECTSI5.360e-6385.22Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A7R9YCM0_9STRA1.360e-6288.18Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus Tax... [more]
A0A7S2GRL8_9STRA2.270e-6285.96Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
D7G193_ECTSI3.090e-6285.22Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7S0S3G4_9CHLO3.660e-6283.48Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID... [more]
A0A6U2JFS4_9STRA8.890e-6285.34Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A836CG77_9STRA1.110e-6183.47Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:217833..218195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI9
Preferred nameH2AFY
PFAMsHistone,Histone_H2A_C,Macro
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
Exons1
Evalue8.79e-64
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota
DescriptionHistone H2A
Cds size363
COG categoryB
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.990955-CDS-H-akashiwo_Contig112:217832..2181951681387087.990955-CDS-H-akashiwo_Contig112:217832..218195Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 217833..218195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.5.1prot_H-akashiwo_Contig112.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 217833..218195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.5.1

>prot_H-akashiwo_Contig112.5.1 ID=prot_H-akashiwo_Contig112.5.1|Name=mRNA_H-akashiwo_Contig112.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=121bp
MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAA
VLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIA
QGGVLPNIHTVLLPKKTKTA*
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mRNA from alignment at H-akashiwo_Contig112:217833..218195-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.5.1 ID=mRNA_H-akashiwo_Contig112.5.1|Name=mRNA_H-akashiwo_Contig112.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig112:217833..218195- (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGTGGAAAGAAGTCTCAGACCAGGAGCTCCAA
GGCTGGTCTCCAGTTCCCTGTGGGCCGTATTGGCCGCTACCTGAAGCAGG
GCCGTTATTCCGCCCGTGTGGGTGCCGGTGCCCCTGTGTACCTCGCCGCC
GTGCTCGAGTACCTGTGCGCTGAGATCCTTGAGCTCGCTGGAAACGCCGC
CCGTGATAACAAGAAGACCAGAATTGTACCTCGTCACCTGCAGCTCGCTG
TCAGAAACGACGAGGAGCTGAACAAACTTCTGGGTGGTGTGACCATCGCC
CAGGGTGGTGTGCTGCCCAACATCCACACCGTCCTTCTCCCCAAGAAGAC
CAAGACTGCCTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:217833..218195-

>mRNA_H-akashiwo_Contig112.5.1 ID=mRNA_H-akashiwo_Contig112.5.1|Name=mRNA_H-akashiwo_Contig112.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig112:217833..218195- (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGTGGAAAGAAGTCTCAGACCAGGAGCTCCAA
GGCTGGTCTCCAGTTCCCTGTGGGCCGTATTGGCCGCTACCTGAAGCAGG
GCCGTTATTCCGCCCGTGTGGGTGCCGGTGCCCCTGTGTACCTCGCCGCC
GTGCTCGAGTACCTGTGCGCTGAGATCCTTGAGCTCGCTGGAAACGCCGC
CCGTGATAACAAGAAGACCAGAATTGTACCTCGTCACCTGCAGCTCGCTG
TCAGAAACGACGAGGAGCTGAACAAACTTCTGGGTGGTGTGACCATCGCC
CAGGGTGGTGTGCTGCCCAACATCCACACCGTCCTTCTCCCCAAGAAGAC
CAAGACTGCCTAA
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