mRNA_H-akashiwo_Contig112.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.39.1
Unique NamemRNA_H-akashiwo_Contig112.39.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:802206..806815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK88
Model size535
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000106
EggNOG OGs2E5EC@1|root,2SC88@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_002470.1
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.2341902-UTR-H-akashiwo_Contig112:802205..8024011681387089.2341902-UTR-H-akashiwo_Contig112:802205..802401Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 802206..802401 +
1681387089.2462811-UTR-H-akashiwo_Contig112:802854..8028721681387089.2462811-UTR-H-akashiwo_Contig112:802854..802872Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 802855..802872 +
1681387089.2803335-UTR-H-akashiwo_Contig112:806740..8068151681387089.2803335-UTR-H-akashiwo_Contig112:806740..806815Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 806741..806815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.2586844-CDS-H-akashiwo_Contig112:802872..8029611681387089.2586844-CDS-H-akashiwo_Contig112:802872..802961Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 802873..802961 +
1681387089.2702088-CDS-H-akashiwo_Contig112:806583..8067401681387089.2702088-CDS-H-akashiwo_Contig112:806583..806740Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 806584..806740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.39.1prot_H-akashiwo_Contig112.39.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 802873..806740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.39.1

>prot_H-akashiwo_Contig112.39.1 ID=prot_H-akashiwo_Contig112.39.1|Name=mRNA_H-akashiwo_Contig112.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=82bp
MKYFDFNKGQLLRETVLEAELAILDDLTQSYSLGKIDAESYYTRGVQLVG
TRRFSIILPDIIGTLKAGPLKADLFKIYQTR*
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mRNA from alignment at H-akashiwo_Contig112:802206..806815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.39.1 ID=mRNA_H-akashiwo_Contig112.39.1|Name=mRNA_H-akashiwo_Contig112.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4610bp|location=Sequence derived from alignment at H-akashiwo_Contig112:802206..806815+ (Heterosigma akashiwo CCMP452)
CCCGGCTCCTAAGCCTGCCCCGGCTCCTAAGCCTGCCCCTGCACCCAAAA
AAGCACCAGCTGGTGGCGGCTTCAGTTTGTTTGGCTCAGCTCCCAAACAA
TCCCCTGCCCCAGCTCCTGCCCCTGCCCCAACCCAGGCTCCCACTCCCGT
TTCAAAGGCTGCTCCTACTCCCCTGAAAACAGCTCCTCCTGGCCAGGTGA
GTATTCACAACAAACCAGTGAGATAGTAGTACGGTATCATGTATGCGCTG
GTGTGGAGCTACATATCTGTTCAACGATCATCATGCATTGTCTGCACATA
GTGTTTGATAATATTCAAACACACACACACACACACATGTATAGAGTATA
TATATGCATGTTTAAAATTGCGTTAAAAGTATATAATACCAAAAAGGTGG
CAATCTATTTAATTAGCTACAAAGTTGGTTTGCCCCCCCGGGTGGGATAC
AGTATATGATCAATGGAGACAGTGGCAGGGCTATAACTGCAAGGGGTTTT
CAGGCAACCTATAGAAAGCATCCAGAGAAGTGTTCAAATGCAATCACCTG
TGCAAGAAGACGATGCTATTTCATTCAGGATGATGTGCGAGGGGCGCATA
CATCAAATGCCCTCTCACACACACACTGCTTTTCTTGCTTCCCCGACAGA
AATCCTTGCCCGCCAGCATGAAGTACTTTGACTTCAATAAAGGCCAGCTT
CTCCGGGAAACAGTTTTGGAGGCTGAGCTTGCGATCTTAGATGACTTGAC
CCAGAGGTATTCATAAGATGCACAATGTAATACTAAGTTTTACCCAACAC
CTCAACAAGTTTTAAATATATGGAGGAGCTCGGGGTATGAGGATGGTGAG
GGGATTGCCGTTCTCTTCCAGAGATAGTGGGGTGTGCTGTATTCCTGTTG
TTTGGATAGTATGTTTTGTATTGATCCGGATTTTGGGATTTCATGTTTAG
GTTTTGGTACATTACCACAGGGACATCTGCATAGATGCAAGGCATAGGTT
ATTTTCGGTTAAATTGAACTCTCTCTCTCTCCCAATATATTTTTGTCGGT
GCGGGAAAAAAAAAAAAAAAAAAAGCGATCTTAGATCAAAAGGGTGAGAA
GGGAAACCCACTGCAGGCGGAGGAGCCAGGCCTATTTTGCTTCGAGGATT
GAGCTTCTTCAAGTCAAGGCTCCGCAAGAGGAATGTATCCGACAGTCAGC
TTGAGAAAGAGTGGTTGTTTCGAATAGCTCATATTCGACTATTGTACTGC
TGCTGCTGGTGCTACTTCTTGTGTAAGCAGGAGCAGTAGCAGTAGCAGCA
CTAGCATCGATGTAATTTTTTCATTGGCTCAGGGAAAATCCTTACCCTTT
CCTGATATATTCTTTGATTGGCCATACGATATTTCCAATATGAAAAAATT
ACCAGACAAATTATAAAACTACGCTTTATGTATTATTTTTTCTCAAAAAA
AAGTTTGGACGGCGGTCGAAAGTTGGGATAGGTTGAAGTCAGGTTTTACG
TACGGAGCTACCAGGTACGGAACATAGTGAAAGATGTACGGGATTGGCTT
GCGAAGTACTATAGTACGGAATTCCGTACCTCCGTACTCTTAGGCCGAGG
CCTGATACATGTACTCTGTAGATCTAATTTGATTGCTTTGTTCTGGGTTG
GGTTATCACAATTTATGTTCTGTACATATAGCCGAACTATTTTCTCCACT
TTGTGCTTACACGTAGACAATACATATATATATATATATATAATTGGGTT
GAACGACCCCAACTTCTTGAGGGTGTTTTTGGACATGTAGGGACCCTCAG
CTTTTGGAGCCTGGGTATATAGTTTTGGCGCGAAATTCAAGAAGAATTTT
TTGGCGCGAAATTGAAGAACGTTTTGGCGCTCATTTTCGTGACAAAAGTA
ATTGTGTTACCCTTGGGAGACAAATCTCAAAATCACGCATGAAGAAGAAG
CAGTGGAATGAACGAAACGCCCTACGGCGGAAGAATGAAAAGCTCCTCCA
TCATCAGCAGCACGGAATCAGCAGCTGATGATTGAGGGGAGTAGAAAGTA
CCCATTGCTTATCTCAGTCGGAGATGCACAGAATCTTCTTCCTCGTCTTT
TTTGCAGCACGCTCCACATATATACACTATTGAAGTAAATTTCTATACAT
AGCCCGTGAAGAAAGCTTTCAAATGGCTACAAGCAACCACGGTCATACCA
CGGTAGTATCTTTCTTCTGCTTTGAGCTATGTGCCGATAAGAAGAATTTG
GAAACTCTGTCACCCTTACCTTGGAGAGACTTTTACCTTGCTGAAAGCAA
ACGGCTAGGACCAAGAAGTTCGCCAATGCTAAACCTACATCCCAAGCTTT
GAAATAAAACCGGTATGGCTTTCATTGGTTGAGTACAGCGCAAGTTCTAG
TTACTCCATTTCACAACGGTCTTCAATTTCGTGACGGACCAAGTAGACAA
ACACAAAAGTGGTGTAAAACGTGCTGCTGCAATAGTAAAGGCATATCCAT
GTACCAGTCAACAGTTTGTATTGTATTTGTGCTATAGACGCATATATATA
GAATATATATATATATATATATATGGAGAGTTAAATTTAAACAAAACAAC
CTACGCCTTGCATCTATGCAGATGTCCCTGTGGTAATATACCAAAACCTA
CAACTGAAATCCCAAAACCCAAATCAATACAGAACATCAAATACAGCACA
CCCCACTATCTCTGGAAGAGAGTGGCAATCCTATATATATATATATATAT
ATATATATATATATAGGTGTGGAACAACTCTCAACCTGCAAAGCCTTTCT
TGAGTTTTATTTCACGAACTGGAGAAATGAAAAAAGCAACTGGGAGGGTG
TACGGGATGACGAAGAATGGATGAAGAGGATGCTTGTCTTTCTTGAAACC
CTCATTAGGCTAAGGGGCGATGCCCAGGGCTTTTTGCTGCAGCGTTTGAG
GGGTGTGTTTGCAGATTTTGTTGCGCATACCTATCCAGCACTGGTCAATT
TGAAAAAGAAGAAGAAACTGAAAAAGGCCATCAAGTTGGTCATTCGATCT
TACAAAACACTAAAGGTGTCAGAAGGATTCCTGTCATTTGAATCTTCAGC
AAGGCGCGCACCTTCTGCCTTTCAGGCATGCAACAGGGACACAATCAAAA
ACAAAACCCTGGAGGCTCTCAAAAATAACACCGAGCACGTGGAAACACAG
CCATCAGTCACTCTGGCTGCTGGTCGCTCGGGAGCTTCCTTTTCCCTTTG
CCTGGAACAGAAGAATGCAAGTAGTAGCGGAGGCTTGGTGACTACAAATT
CTTCACAGATTCCTGAGGTGATTGGGGGTCTACATGACTTGACTTTGGTT
CTAGAGGAAGAAGCAAGAAAAGATGGGACTGTTGGGAGCTTGGTTCACTC
GATCCTTCATGAGGTGATTGATGAAGCTGTGGCACTTCATGAGAGGGAGA
GAGGTCCATATGGCGAACTTGGCTTCATGATTCCATCTTCCTGGCTCCTG
GAAGAGGCAGGTCTGATGTGGAGGATCAAGAGAGCAGCTGGTGAGGACCG
CTAAGCGGGTGCTGCAGCTTGAAGAAGAAGTGGGTGTAGGTAGTTACATT
ATTATTGTAGTATGCAGATTAGCTAGTTTGTCATAGTAGGTATGTGTGAA
GATGCAAGGCGAGATTGTTTTGGTTGAAATTTAACTGACTATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ACATAGTGCATGTAAAGAGATATGCAGAAAGTTTTTAAGTCCTGGCAGAG
TATATACATATAAAAGCGGTGTATCTGCGGACCAGGGGCTCCAGGAAGAG
GTGGAGGAGCTCGGGGTTCGAGGATGGCGAGGGGATTGCCGTTCTCTTCC
AGAGATAGTGGGGTGTGCTGTATTCGATGTTTTGTATTGGTTTGGGTTTT
GGGATTTCATGTTTAGGTTTCAGTATATTACCACAGGGACATCTGCATAG
ATGCAAGGCGTAGGTTGTTTTGGTTAAATTCAACTCTCTCTCTCTATATA
TATATATTTATATATTTATTTATGTACTACGGCTTGCCTGGGTGGAATGT
GGTTAAGTCGTAGGGTTCCAGTTCTGAGGATTGGGTCGTCGCAAAGCTGA
ATTTTAGGGACGGTGGATTTGAGGTTGAAGACAAACGCTCTGGACTTTTG
TACTTTCTTCAACTGCCCCCCATGATGAATGAGAGAAAGGGGGGGGAGGG
GGGATTGAACAAAGCAGAGTAGAAGCTGTCACCTCTAAAATGTCTCCGGC
CACCACCAATTGTATTATATCCACCACCCTCCCCCCTGTGTCTTCCTGCC
TTATTTGTTTTGAAACTTCTGTTTACAGCTACTCCCTGGGCAAAATAGAT
GCTGAGAGTTACTACACCAGGGGTGTTCAGTTAGTGGGGACCAGACGGTT
CTCTATCATTCTGCCTGACATTATTGGGACCTTGAAAGCAGGGCCCTTAA
AGGCAGACTTATTCAAGATCTATCAAACACGTTAAAGCAGCATCTATTGA
TGGTTAGAATTGATACTTTTGTTGTTGCATTTTGGTGTTTTGAAGGCTGT
ATAGATTGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:802206..806815+

>mRNA_H-akashiwo_Contig112.39.1 ID=mRNA_H-akashiwo_Contig112.39.1|Name=mRNA_H-akashiwo_Contig112.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig112:802206..806815+ (Heterosigma akashiwo CCMP452)
ATGAAGTACTTTGACTTCAATAAAGGCCAGCTTCTCCGGGAAACAGTTTT
GGAGGCTGAGCTTGCGATCTTAGATGACTTGACCCAGAGCTACTCCCTGG
GCAAAATAGATGCTGAGAGTTACTACACCAGGGGTGTTCAGTTAGTGGGG
ACCAGACGGTTCTCTATCATTCTGCCTGACATTATTGGGACCTTGAAAGC
AGGGCCCTTAAAGGCAGACTTATTCAAGATCTATCAAACACGTTAA
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