mRNA_H-akashiwo_Contig112.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.22.1
Unique NamemRNA_H-akashiwo_Contig112.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig112.22.1 vs. uniprot
Match: A0A7S3UZ04_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ04_HETAK)

HSP 1 Score: 189 bits (481), Expect = 5.980e-60
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 3 
Query:  195 YGSNNGPLGSRGTSQITIDVEIEVQSTYQPEMNVSVLFYASPKIGDELRWNFCNGLPPSSTKIDPKNHEGNLSPPPPHRGLEGPIGLGDP 464
            YGSNNGPLGSRGTSQITIDVEIEVQSTYQPEMNVSVLFYASPKIGDELRWNFCNGLPPSSTKIDPKNHEGNLSPPPPHRGLEGPIGLGDP
Sbjct:    1 YGSNNGPLGSRGTSQITIDVEIEVQSTYQPEMNVSVLFYASPKIGDELRWNFCNGLPPSSTKIDPKNHEGNLSPPPPHRGLEGPIGLGDP 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UZ04_HETAK5.980e-60100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:590853..594422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009040031.1
PFAMsLung_7-TM_R
Model size466
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0031090,GO:0031984,GO:0031985,GO:0032580,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0098588,GO:0098791
Exons4
Evalue1.04e-05
EggNOG OGsKOG2568@1|root,KOG2568@2759|Eukaryota
Descriptionretrograde transport, endosome to Golgi
Cds size411
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387088.7552898-UTR-H-akashiwo_Contig112:590852..5909051681387088.7552898-UTR-H-akashiwo_Contig112:590852..590905Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 590853..590905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387088.7675385-CDS-H-akashiwo_Contig112:590905..5911201681387088.7675385-CDS-H-akashiwo_Contig112:590905..591120Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 590906..591120 +
1681387088.7773833-CDS-H-akashiwo_Contig112:591291..5913801681387088.7773833-CDS-H-akashiwo_Contig112:591291..591380Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 591292..591380 +
1681387088.7870753-CDS-H-akashiwo_Contig112:593149..5932231681387088.7870753-CDS-H-akashiwo_Contig112:593149..593223Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 593150..593223 +
1681387088.7976818-CDS-H-akashiwo_Contig112:594389..5944221681387088.7976818-CDS-H-akashiwo_Contig112:594389..594422Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 594390..594422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.22.1prot_H-akashiwo_Contig112.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 590906..594422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.22.1

>prot_H-akashiwo_Contig112.22.1 ID=prot_H-akashiwo_Contig112.22.1|Name=mRNA_H-akashiwo_Contig112.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
MGPYYHFKIVALLGFLGVFLPQDSVGFKWQVDDGYMDQAFSFSELNMYGS
NNGPLGSRGTSQITIDVEIEVQSTYQPEMNVSVLFYASPKIGDELRWNFC
NGLPPSSTKIDPKNHEGNLSPPPPHRGLEGPIGLGDP
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mRNA from alignment at H-akashiwo_Contig112:590853..594422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.22.1 ID=mRNA_H-akashiwo_Contig112.22.1|Name=mRNA_H-akashiwo_Contig112.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3570bp|location=Sequence derived from alignment at H-akashiwo_Contig112:590853..594422+ (Heterosigma akashiwo CCMP452)
ATTATCTTTCCTGTGGGTGTTTGTACCCAGACCCAACGGGCTGAGGCTGC
CAAATGGGTCCATATTATCATTTCAAAATAGTTGCATTGCTTGGTTTTCT
TGGGGTGTTCTTGCCCCAAGACAGCGTAGGCTTCAAATGGCAAGTTGATG
ATGGCTACATGGACCAGGCCTTCAGCTTTTCGGAACTGAATATGTATGGT
TCCAACAACGGGCCTCTGGGTAGCAGAGGAACATCACAAATAACTATTGA
TGTTGAGATTGAAGTTCAGTGAGTAAAAACTGGGTTTGGAATGCCTCCTA
GATAAATAACATGACGACATCACTGCACATTGCATTATTATTAAATAGTA
TTCAGGTTAAGTTATATCTTGTTTTAAAACAATGCACGCAAAATATAATG
CTTATCTTGCTAACTGTAAATCATGCTTTTCTGTCAAAGGTCTACGTATC
AGCCAGAAATGAATGTTTCAGTTCTGTTCTACGCATCCCCCAAAATTGGT
GACGAGCTAAGATGGAATTTCTGTAACGGTAGTGAACAAACTGATTTGTC
TTGTCATATTATGAATGGTGAAATATCAACAAGTACAGCTTGCAAACATT
TGAACCTGTACGTTTAGTACATAGTATTTTGGGTACAATTTATATTATGA
GCCCACACTACCAAAATGAAAGGAATACATTCACTACTGGTACGTGGGTA
TATGCTGGCAGTCCTGCTTTCAATCATCCATGCTCGCAATCAGCTCCTCA
ACCCTCTGCCCGCTTCCCAGCAAAGATACCATGACTTTCTGTGTACCTCT
TTACTACATCCTTCTCTATTGTACATTACCTACCCCCCCCCCCTCAGTTT
GCATCATCTATATTATCCCAAAGCAGCGCAGCGGCAGCACTACCAAACCT
TTCTTTTCTAGTGGCCGTCAGGATTAACGTTGGGGTATCTATAGGGAGGG
TTCTGCGGCGGATCTTTTACGAAAAGTTCAAAAGTTCCAAAAATTATAAT
GATGCATGGGGATACACTTTTAGGTGCATTCAGAACGCATTTTTAAGGTT
TTTGATGGGCCCACCTTCGTGTAGTGTAATGTGTTCAAAATGCTATTCAA
GCTGTGCCACCAGATATCCGCAAAAAAAAAAACTCTAGAAAAGAGATTTT
ACTTGTTTTAGGGTCCATTCTATCACTTGCGGCTTTACGGGGAGGATCTC
GGTCTACTGTGTGTGTGCCACTGAAGGGGTTTCAGGCAATTTCTCTCTCC
TAGACAGTAGTGGAACTCAAAATTGGTATAAAGAGTCGTTAGTTTCGAAG
AATTCATCTATTCATCCAAGTGGATTTTCTAGTGAAAGTTCATATGAATA
AATGATTTAAATCGCCCTAAAAACCGGCTTGAAAGTCCTATATCGCACCA
TTTTACCCAAAAATGCCAAGCCGCAGAACAACGAAAACGGCTCAAGTTTC
CACGTCACATGGGCTTTGAGGCTCTTCGTTTCTTGTCCTGCAAGACACAG
ACCGCTGAAATCCGTTACTAGCTTGTTCAAGTTGAATTAATCTGAATATG
TCGTTCAGCATATATAGACATGCCATTCGACTGTTGGAGCGGACGCTGGC
TGGCATTATTTTCTTCGAAAATCCTGATGATTATGTGGTGGTGCCGCACC
AGCAGCACCTACTTACTACTACATACTACCAGCGACAAGAAGCAGCAAGC
AGGAGCAAGAGCAGCAGTTGGAGGAGGAGGAAGAATCGTTGGTCGTTGGT
TGTCGTTGTTGTGATGGTCTTGGTCGTTGTTGTTGTGGGGTTGTTATAGA
ATTGTTATAGATTTTATCGTTGTAGATGATAATTCCGTGGAATTTAGTGA
TTTCGTGGCGTGGTTCGCGATTGCACCTGTTCACAGGAAAAAAAACATTT
AACTCGAAAACTACATTTTTGCAGTTGTGGAAAAGTATAGCTCAAAATTT
TCGCCGCCTACCGGCGCACATTTTGAGCTATTTTCCCACAACTGTGGAAG
CATAGAACGCAATTTTTATTTTCGGGGCATTCCGCCGCAAAATACCCCCG
TTTATCGTGACGGCCACTTTCTGGTTGAAGTCAAGCTACAACAGGAAGAT
ATGTTCCCATTTTCTCCTCCACACTTTTGTTTTGTAATCCCTTTTTGTCA
GTTTGCTCAAAATCTGCTTCAGGCCATGATTGAACTGTGATTGACGGAAG
GCATGGTAGTAACATTATGTAAATCCCTGCAATCCCTTGAGAACCAACTC
AGCCTAAATCATATGTGTACCAAGTCAAACTTTTGTTTCTGTCCCAGGTC
TTCCACCAAGTTCAACCAAAATTGACCCAAAGAATCATGAAGGGAACCTG
TCGCCACCACCGCCACATCGGGTGAGGATGGCATTGGGCGAACGAGTGGT
GTGAGGAAACATATATATGTGTATACACAGCTGCTAAATACATCCAACCA
ACATACAGACAGTAGGACAACTTGAGAGTGCTTTGTGCCCAGTTTGTTCC
AAATGATGGCTGGTGTTGTGCGGCGCCAATCAACCTTGTCTGGTTTTTTC
TGCTTTTTTTTTTTTGGTTGTTCGCTTTTACTATGATGGAGAGGTATACA
CGTGCAACACATTTCTTACCAGAATGCCCTCAATACCTCTGCCCGTGTAA
AGGTGAAGAAGTACAAGGCTGCTGCGGAAGAGCGCCGTGCAACTTTCTGC
CCCTTGATTGTCACTGTGGAGGGTATTGCCTACCAGTCCATGCACAGGCC
TTCCTCAGGCGCATTGCTGCCCGGCTCTCGGCAAAGTGGCAGAAGCCTCT
CTCAACGGTCAGCAACTGGGTGCGTGTCCGTGTGCAGTTCGCGGTCATCA
AATCGGTGGATCTGCGGACCAGGGGCTTCAGGAAGAAGTGAAGGAGCTCG
GGGTTCGAGGATGGCGAGGGGATTGCCGTTCTCTTCCAGAGATAGTGGGG
AGTGCTGTATTCCTGTTTGAACAGTATGTTTTGTATTGATTTGGGTTTTG
GGATTTCATGTTTATAGTCTTTAGTACATTACCACAGGGACATCTGCATA
GATGCAAGGCGTATAGGTTGTTTTGGTTAAATTCAAAACTCTCTCTCTCT
CTCTCTCTCTCTATATATATTTTACATTATTTATAATAAAAAATAATATG
ATAATATTTGATATATATATTATTAGATATGTATGTACCTGATAGAGCTT
TCAAAGAAGAAGGCCGTAAGGATTGATGGCCATCATCTGGACTGGACTGG
CATTCACGAGCCGCTGACAAGTAGACCTATGATGTGTGCGTGAACCATGC
ATAAAACAGCACCACATCGATGAACTCAGGAGTTGGATAAACATGCAGCG
GTGATGTTGGTGGTGTACACGTAGAAAAAAAAACAATTCTCAACTTATGT
TGTGACAAAAGTATCAAAACAGCAGCAACAACAACGACGACGCGCTCCCT
TTCACCCCGTCCCATCCTCTCCCCATCCCACAGACTGCTTCCTTCGCCGC
CGCCGCTCCCCCCCGCTGACCCCGgccccccCCCCAGGGCTTGGAAGGGC
CCATCGGCTTGGGCGACCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:590853..594422+

>mRNA_H-akashiwo_Contig112.22.1 ID=mRNA_H-akashiwo_Contig112.22.1|Name=mRNA_H-akashiwo_Contig112.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig112:590853..594422+ (Heterosigma akashiwo CCMP452)
ATGGGTCCATATTATCATTTCAAAATAGTTGCATTGCTTGGTTTTCTTGG
GGTGTTCTTGCCCCAAGACAGCGTAGGCTTCAAATGGCAAGTTGATGATG
GCTACATGGACCAGGCCTTCAGCTTTTCGGAACTGAATATGTATGGTTCC
AACAACGGGCCTCTGGGTAGCAGAGGAACATCACAAATAACTATTGATGT
TGAGATTGAAGTTCAGTCTACGTATCAGCCAGAAATGAATGTTTCAGTTC
TGTTCTACGCATCCCCCAAAATTGGTGACGAGCTAAGATGGAATTTCTGT
AACGGTCTTCCACCAAGTTCAACCAAAATTGACCCAAAGAATCATGAAGG
GAACCTGTCGCCACCACCGCCACATCGGGGCTTGGAAGGGCCCATCGGCT
TGGGCGACCCC
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