mRNA_H-akashiwo_Contig112.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.21.1
Unique NamemRNA_H-akashiwo_Contig112.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig112.21.1 vs. uniprot
Match: A0A7S3YFK7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFK7_HETAK)

HSP 1 Score: 144 bits (363), Expect = 1.930e-42
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 FFVAVSQPAFAAAARQVKKQVVVEEITSEQNQIEKERRQETGPLVIWSNVNLKVQDNKKKERTAKKKWSFLKKRDEGV 234
            FFVAVSQPAFAAAARQVKKQVVVEEITSEQNQIEKERRQETGPLVIWSNVNLKVQDNKKKERTAKKKWSFLKKRDEGV
Sbjct:   15 FFVAVSQPAFAAAARQVKKQVVVEEITSEQNQIEKERRQETGPLVIWSNVNLKVQDNKKKERTAKKKWSFLKKRDEGV 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YFK7_HETAK1.930e-42100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:586281..587044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size235
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.621365-CDS-H-akashiwo_Contig112:586281..5863351681387087.621365-CDS-H-akashiwo_Contig112:586281..586335Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 586282..586335 -
1681387087.631812-CDS-H-akashiwo_Contig112:586578..5866481681387087.631812-CDS-H-akashiwo_Contig112:586578..586648Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 586579..586648 -
1681387087.6425846-CDS-H-akashiwo_Contig112:586934..5870441681387087.6425846-CDS-H-akashiwo_Contig112:586934..587044Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 586935..587044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.21.1prot_H-akashiwo_Contig112.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 586282..587044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.21.1

>prot_H-akashiwo_Contig112.21.1 ID=prot_H-akashiwo_Contig112.21.1|Name=mRNA_H-akashiwo_Contig112.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=78bp
FFVAVSQPAFAAAARQVKKQVVVEEITSEQNQIEKERRQETGPLVIWSNV
NLKVQDNKKKERTAKKKWSFLKKRDEGV
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mRNA from alignment at H-akashiwo_Contig112:586281..587044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.21.1 ID=mRNA_H-akashiwo_Contig112.21.1|Name=mRNA_H-akashiwo_Contig112.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=764bp|location=Sequence derived from alignment at H-akashiwo_Contig112:586281..587044- (Heterosigma akashiwo CCMP452)
TTTTTTGTGGCTGTTTCCCAGCCAGCTTTTGCAGCAGCAGCTCGACAAGT
CAAAAAGCAGGTCGTGGTGGAAGAGATTACTTCTGAGCAGAATCAAATTG
AAAAGGAAAGGTGAGAAGGTGCAGTGTAGAATTATGGGAGAAATCATACT
GTTGAGATCAATATCCTTTTGTAAGGCACAATGTGATATGTGTACGAACA
TCTTGGAGAACAAGATGGGATCATTACATCAGTCGACAGCAAGCCTCTGC
CTTCTTTTACTGAAATGGCAAAGTCCGATTTGCGTTCAGAAAAGACCAAG
ATATCGAAATCACCATCTTCTTTAGTCTTAGTCTATAAATGGCAAATGAT
GTAGCAGAGTCGCTATATTCTTATTCATGGTATTGTACTGCAACAGAAGA
CAAGAAACGGGGCCACTGGTCATTTGGAGCAACGTGAACCTGAAAGTTCA
GGATAACAAAAAAAAGGTGAAAAATAGTGATACTTTTCATCGGCATGAAT
TTCTTGATTTTACTATCCATTGACTGAGTGGCCTGTATCAACCTTCTCTT
TGTGCGTGCTTTGTCGTCTTGTTGTTTATATGTTTCTTCTTCATTATGAT
GTGCAACATTATATTTCGTTGATTGTGTGTGCTGAATTGCATTGCCGGTG
TTGTATTATCAAAATGCAAATGAACGATCATGCATTCGCAACACTTATGA
ATCTTAAAGGAGCGCACTGCCAAGAAAAAATGGTCATTTTTGAAGAAAAG
GGACGAAGGCGTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:586281..587044-

>mRNA_H-akashiwo_Contig112.21.1 ID=mRNA_H-akashiwo_Contig112.21.1|Name=mRNA_H-akashiwo_Contig112.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=234bp|location=Sequence derived from alignment at H-akashiwo_Contig112:586281..587044- (Heterosigma akashiwo CCMP452)
TTTTTTGTGGCTGTTTCCCAGCCAGCTTTTGCAGCAGCAGCTCGACAAGT
CAAAAAGCAGGTCGTGGTGGAAGAGATTACTTCTGAGCAGAATCAAATTG
AAAAGGAAAGAAGACAAGAAACGGGGCCACTGGTCATTTGGAGCAACGTG
AACCTGAAAGTTCAGGATAACAAAAAAAAGGAGCGCACTGCCAAGAAAAA
ATGGTCATTTTTGAAGAAAAGGGACGAAGGCGTT
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