mRNA_H-akashiwo_Contig112.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.11.1
Unique NamemRNA_H-akashiwo_Contig112.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig112.11.1 vs. uniprot
Match: A0A7S3Y9I3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9I3_HETAK)

HSP 1 Score: 265 bits (677), Expect = 4.700e-87
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3 
Query:  231 MKIKMVEYTQPAEDIQGQLVHFEKVQNFRSIVPGALVFRSAELDERSSSDLEKLNNEIQIRTVIDLRGESERKLFKSCCPLGEDFEIIETPQAMDLSLVKPNLLSAARRCFRLSLLEPERQYAGMWRRMTPALRA 635
            MKIKMVEYTQPAEDIQGQLVHFEKVQNFRSIVPGALVFRSAELDERSSSDLEKLNNEIQIRTVIDLRGESERKLFKSCCPLGEDFEIIETPQAMDLSLVKPNLLSAARRCFRLSLLEPERQYAGMWRRMTPALRA
Sbjct:    1 MKIKMVEYTQPAEDIQGQLVHFEKVQNFRSIVPGALVFRSAELDERSSSDLEKLNNEIQIRTVIDLRGESERKLFKSCCPLGEDFEIIETPQAMDLSLVKPNLLSAARRCFRLSLLEPERQYAGMWRRMTPALRA 135
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BLAST of mRNA_H-akashiwo_Contig112.11.1 vs. uniprot
Match: A0A835YRA7_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-7
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 3 
Query:  294 FEKVQNFRSIVPGALVFRSAELDERSSSDLEKLNNEIQIRTVIDLRGESERKLFKSCCPLGEDFEIIETPQAMDLSLVKPNLLSAARRCFRLSLLEPERQYAGMW 608
            F+ + NFR +     +FRSA L+  ++ DL KL  E+ ++++IDLRGE ER++         DF  +   Q+  ++        A R+ + +SLLE ER Y G++
Sbjct:   53 FDAIYNFRPVGAAQRIFRSAALEAATAEDLRKLTTELNVKSIIDLRGEDERRMLWQT-----DFGSLFDRQSSSVAS------EADRQIYHISLLETERYYRGIY 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y9I3_HETAK4.700e-87100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YRA7_9STRA1.330e-733.33Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:283972..284923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog221103.XP_007855564.1
PFAMsY_phosphatase3
Model size637
Max annot lvl4751|Fungi
KEGG koko:K01104
Hectar predicted targeting categorysignal peptide
Exons3
Evalue9.88e-06
EggNOG OGs2E1I5@1|root,2S8V4@2759|Eukaryota,3A0DY@33154|Opisthokonta,3P21H@4751|Fungi
EC3.1.3.48
DescriptionTyrosine serine protein phosphatase
Cds size513
COG categoryS
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387088.1077302-CDS-H-akashiwo_Contig112:283971..2840621681387088.1077302-CDS-H-akashiwo_Contig112:283971..284062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 283972..284062 -
1681387088.1172352-CDS-H-akashiwo_Contig112:284243..2844331681387088.1172352-CDS-H-akashiwo_Contig112:284243..284433Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 284244..284433 -
1681387088.1254199-CDS-H-akashiwo_Contig112:284569..2848011681387088.1254199-CDS-H-akashiwo_Contig112:284569..284801Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 284570..284801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387088.133642-UTR-H-akashiwo_Contig112:284801..2849231681387088.133642-UTR-H-akashiwo_Contig112:284801..284923Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 284802..284923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.11.1prot_H-akashiwo_Contig112.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 283972..284801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.11.1

>prot_H-akashiwo_Contig112.11.1 ID=prot_H-akashiwo_Contig112.11.1|Name=mRNA_H-akashiwo_Contig112.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=171bp
MEGISAFFFIIIFSAYCSVGLCFHTNILKKEVSTTTMKIKMVEYTQPAED
IQGQLVHFEKVQNFRSIVPGALVFRSAELDERSSSDLEKLNNEIQIRTVI
DLRGESERKLFKSCCPLGEDFEIIETPQAMDLSLVKPNLLSAARRCFRLS
LLEPERQYAGMWRRMTPALRA
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mRNA from alignment at H-akashiwo_Contig112:283972..284923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.11.1 ID=mRNA_H-akashiwo_Contig112.11.1|Name=mRNA_H-akashiwo_Contig112.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=952bp|location=Sequence derived from alignment at H-akashiwo_Contig112:283972..284923- (Heterosigma akashiwo CCMP452)
TGAGAATATGACATAGGAGAAGGCATCAAGTCATTACACAATATCATTAC
CATTCCATTTAAATCATATGTAATACCGGCTCTAACTGCAGGGAGTTTAG
AATTCTTCAATCATAGAGCAGTATGGAGGGGATAAGCGCGTTTTTTTTTA
TTATTATTTTCAGTGCTTACTGCTCTGTGGGGCTTTGCTTTCACACAAAT
ATTCTGAAGAAAGAAGTTAGTACCACCACCATGAAAATAAAAATGGTGGA
ATATACACAACCAGCTGAGGATATTCAGGGGCAACTTGTTCATTTCGAAA
AAGTCCAAAATTTCCGCTCTATCGTGCCAGGGGCACTGGTTTTCCGCTCT
GCAGGTTATTTTTTTGTCCAAATCTACGTTTATTGTTTTCACTGTGAATG
TAGGTAGATTTTAGCGCTGTAAATCAGATTGTATTTTTATACCCCTCTAC
ACTCACCCCACTCTACCTTCCTCACATTATGCGGCGGCAGAACTTGATGA
AAGATCCTCCAGTGATCTTGAAAAACTGAACAACGAAATACAAATTAGGA
CAGTGATTGACCTCCGAGGAGAGAGCGAACGGAAGCTGTTCAAGAGTTGT
TGTCCTCTCGGCGAGGACTTTGAAATAATAGAGACCCCACAAGCTATGGA
TCTATCATTGGTAAAACCCAATCTCCTAAGGTTTGTGTGCCCCACACACT
ATAATATCTATTATAAATAATAATTTGGCCCAAAGTATTATCCTTTTGTG
CCTTAACCTTCTAAAATACGATATCTTTTTTAACGTCGGGCATGAAGCTA
GCCATAGATGACTCCCCTCCCCTCAACCCCCCCACCGCGGCCACCCCTCC
CCCGCCTCCAGCGCTGCCCGGCGGTGCTTCCGTTTGAGCCTGCTCGAGCC
GGAACGCCAGTACGCGGGGATGTGGCGCCGGATGACCCCCGCCCTGCGGG
CC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:283972..284923-

>mRNA_H-akashiwo_Contig112.11.1 ID=mRNA_H-akashiwo_Contig112.11.1|Name=mRNA_H-akashiwo_Contig112.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig112:283972..284923- (Heterosigma akashiwo CCMP452)
ATGGAGGGGATAAGCGCGTTTTTTTTTATTATTATTTTCAGTGCTTACTG
CTCTGTGGGGCTTTGCTTTCACACAAATATTCTGAAGAAAGAAGTTAGTA
CCACCACCATGAAAATAAAAATGGTGGAATATACACAACCAGCTGAGGAT
ATTCAGGGGCAACTTGTTCATTTCGAAAAAGTCCAAAATTTCCGCTCTAT
CGTGCCAGGGGCACTGGTTTTCCGCTCTGCAGAACTTGATGAAAGATCCT
CCAGTGATCTTGAAAAACTGAACAACGAAATACAAATTAGGACAGTGATT
GACCTCCGAGGAGAGAGCGAACGGAAGCTGTTCAAGAGTTGTTGTCCTCT
CGGCGAGGACTTTGAAATAATAGAGACCCCACAAGCTATGGATCTATCAT
TGGTAAAACCCAATCTCCTAAGCGCTGCCCGGCGGTGCTTCCGTTTGAGC
CTGCTCGAGCCGGAACGCCAGTACGCGGGGATGTGGCGCCGGATGACCCC
CGCCCTGCGGGCC
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