mRNA_H-akashiwo_Contig1117.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1117.4.1
Unique NamemRNA_H-akashiwo_Contig1117.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1117.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1117contigH-akashiwo_Contig1117:282898..283810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.8832984-CDS-H-akashiwo_Contig1117:282897..2829901681387086.8832984-CDS-H-akashiwo_Contig1117:282897..282990Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 282898..282990 +
1681387086.8912969-CDS-H-akashiwo_Contig1117:283146..2832081681387086.8912969-CDS-H-akashiwo_Contig1117:283146..283208Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 283147..283208 +
1681387086.9015355-CDS-H-akashiwo_Contig1117:283788..2838101681387086.9015355-CDS-H-akashiwo_Contig1117:283788..283810Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 283789..283810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1117.4.1prot_H-akashiwo_Contig1117.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1117 282898..283810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1117.4.1

>prot_H-akashiwo_Contig1117.4.1 ID=prot_H-akashiwo_Contig1117.4.1|Name=mRNA_H-akashiwo_Contig1117.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
MPSTASLSSSNDDDAYMIILLLGGACVLPWTAITSAADYFNLIFKGFEIE
FWFALCTMG
back to top

mRNA from alignment at H-akashiwo_Contig1117:282898..283810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1117.4.1 ID=mRNA_H-akashiwo_Contig1117.4.1|Name=mRNA_H-akashiwo_Contig1117.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=913bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:282898..283810+ (Heterosigma akashiwo CCMP452)
ATGCCATCAACTGCTAGTCTATCTTCATCAAATGATGATGATGCCTATAT
GATCATTCTTCTTCTAGGAGGCGCATGTGTTCTGCCCTGGACGGTGCGTT
ACTTTTTGCGTGCAAAAAGTGGTGGCCTTCTTGATACAAGTCGAGAGTGT
GAACCAAAACTGACAGTTGATGGCTTTTATAATTAGTGGACATGGTGTCA
CGTATTGTAAATATTACTATGTTCTCTGTTTTTGTTGATATTTTCTTAGG
CAATAACTTCTGCAGCAGACTATTTCAACTTAATTTTCAAAGGGTTTGAG
ATTGAGTTCTGGTAAGAAGGAGAAAAACTAAAACAATGCTGCTTCTTACC
ACTTCTTTTCAAATTGATACAATGATGCTCGTGGTACCAATGAAGCTGTA
AGTGTTGTGGGCAGTGAGGTTTATGTGTTTTGGGTCAAAAAGTATGCATC
GTCTGCACCATTTTTTTTTTTTTTAATTGTTGCGTTTTGATGTGAAGAGA
AAATGATAACGCAGAACTTATCCATAGCTGCAACCGACCATCTTCTATCT
TATTTTGAGCTACTCCCTAACTGACATGAATTCTTCAATGTGTCATTGTT
GAGGTAAATCATTATTGTTGAGATTGTCCAATATTCCTATACTAGCCTGA
CCCTGTACTCGACCTCTTGTCCGTTGTTGCAACAAGGGTTGTGTGAAGTC
CAGCTGTGCGGCGTATATTGAAGCAAGCTGCATGCATAGAAAACAACATG
CATGATGTATGGCTGGAAATCACATTTACATTCTGGTTCTTGGAGATCGG
TAGTTTTAAGGACTGTATGCATTCATTCAGCAGCAGCAAGCTTTTCTTTT
CTTTTTTGTAAAGTGGGGACTTTTAAATTCTTCACTGGCAGGTTTGCACT
CTGTACGATGGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1117:282898..283810+

>mRNA_H-akashiwo_Contig1117.4.1 ID=mRNA_H-akashiwo_Contig1117.4.1|Name=mRNA_H-akashiwo_Contig1117.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:282898..283810+ (Heterosigma akashiwo CCMP452)
ATGCCATCAACTGCTAGTCTATCTTCATCAAATGATGATGATGCCTATAT
GATCATTCTTCTTCTAGGAGGCGCATGTGTTCTGCCCTGGACGGCAATAA
CTTCTGCAGCAGACTATTTCAACTTAATTTTCAAAGGGTTTGAGATTGAG
TTCTGGTTTGCACTCTGTACGATGGGG
back to top