mRNA_H-akashiwo_Contig1117.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1117.3.1
Unique NamemRNA_H-akashiwo_Contig1117.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A7S4DEP1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEP1_HETAK)

HSP 1 Score: 241 bits (614), Expect = 5.840e-80
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 2 
Query:   68 MHGLVPGFENQFHNLRKSERQRNLLLRDTTMYGNNVVHDSNKRSLEAIQSSYGEDPSKRQMTGVGQGYDTGAQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAG 409
            MHGLVPGFENQFHNLRKSERQRNLLLRDTTMYGNNVVHDSNKRSLEAIQSSYGEDPSKRQMTGVGQGYDTGAQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAG
Sbjct:    1 MHGLVPGFENQFHNLRKSERQRNLLLRDTTMYGNNVVHDSNKRSLEAIQSSYGEDPSKRQMTGVGQGYDTGAQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAG 114
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A7S3RPL2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RPL2_9SPIT)

HSP 1 Score: 64.7 bits (156), Expect = 1.260e-9
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:  281 AQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAGEGRH 421
            AQ   A  +P  PG+ PC+F+++TGSCKFG  CKFDHP Q  GEGRH
Sbjct:  210 AQGAPAGPHPSRPGEPPCSFFLKTGSCKFGTRCKFDHPAQ-VGEGRH 255
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A444G2U5_ENSVE (C3H1-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444G2U5_ENSVE)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 2 
Query:  305 YPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAGEGR 418
            YP  PG+  CA+Y+RTG C+FG+ CKF+HPP      R
Sbjct:    6 YPERPGEPDCAYYIRTGLCRFGRTCKFNHPPNAVAAAR 43
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: UPI000539843C (zinc finger CCCH domain-containing protein 43-like isoform X1 n=8 Tax=Camelina sativa TaxID=90675 RepID=UPI000539843C)

HSP 1 Score: 62.0 bits (149), Expect = 1.750e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:  173 VVHDSNKRSLEAIQSSYGEDPSKRQMT-------GVGQGYDTGAQQNAAEQ----YPRNPGQDPCAFYVRTGSCKFGQACKFDHP 394
            V  + ++ ++   + S G D +   +T       G G GYD G  +N +E+    YP  P  + C+FY+RTGSCKFG  CKF+HP
Sbjct:   54 VTKEQSETTMSVCEGSGGLDSNAVDITQEDDEENGDGDGYDDGWSENESEESEAVYPVRPEAEDCSFYMRTGSCKFGSTCKFNHP 138
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A7S2XVW4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVW4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.080e-7
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 2 
Query:  302 QYPRNPGQDPCAFYVRTGSCKFGQACKFDHPP 397
            QYP+ PG DPC F+++TGSCK+   CK+DHPP
Sbjct:  137 QYPQRPGMDPCGFFLKTGSCKYKDQCKYDHPP 168
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A5K1BFY8_9MAGN (C3H1-type domain-containing protein (Fragment) n=8 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BFY8_9MAGN)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-7
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:  305 YPRNPGQDPCAFYVRTGSCKFGQACKFDHPP 397
            YP  PG+  CA+Y+RTG C+FG  C+F+HPP
Sbjct:   18 YPERPGEQDCAYYMRTGLCRFGMTCRFNHPP 48
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A0K9PVF3_ZOSMR (Zinc finger CCCH domain-containing protein 32 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PVF3_ZOSMR)

HSP 1 Score: 58.9 bits (141), Expect = 2.090e-7
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 2 
Query:  299 EQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQ 400
            + +P NPGQ  C FY+RTG CKFGQ C++ HPP+
Sbjct:  295 QNFPENPGQPECQFYMRTGDCKFGQTCRYHHPPE 328
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BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A833VNF5_9POAL (Zinc finger CCCH domain-containing protein ZFN-like isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VNF5_9POAL)

HSP 1 Score: 58.5 bits (140), Expect = 2.720e-7
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  278 GAQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPA 406
            G +Q  A  YP  PG+  C++Y+RTG+C+FG  CKF+HPP  A
Sbjct:   45 GGEQVDAGSYPERPGEADCSYYMRTGTCRFGMTCKFNHPPNRA 87
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A0D3DRD5_BRAOL (Uncharacterized protein n=10 Tax=Brassica TaxID=3705 RepID=A0A0D3DRD5_BRAOL)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-7
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 2 
Query:  278 GAQQNAAEQ-YPRNPGQDPCAFYVRTGSCKFGQACKFDHP-PQP 403
            G  +N +E  YP  PG + CAFY+RTGSCKFG  CKF+HP P P
Sbjct:   75 GVSENESEALYPVRPGAEDCAFYMRTGSCKFGSTCKFNHPLPNP 118
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Match: A0A830BFS7_9LAMI (Zinc finger CCCH domain-containing protein 43 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BFS7_9LAMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.910e-7
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 2 
Query:  269 YDTGAQQNAAEQYPRNPGQDPCAFYVRTGSCKFGQACKFDHPPQPAGEG 415
            Y+  +  N    YP  P  + CAFY+R+GSCKFG  CKF+HPP+   +G
Sbjct:  290 YNNQSNNNKRISYPMRPDAEDCAFYMRSGSCKFGSNCKFNHPPRRKNQG 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1117.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DEP1_HETAK5.840e-80100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3RPL2_9SPIT1.260e-959.57Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A444G2U5_ENSVE1.360e-852.63C3H1-type domain-containing protein n=1 Tax=Ensete... [more]
UPI000539843C1.750e-837.65zinc finger CCCH domain-containing protein 43-like... [more]
A0A7S2XVW4_9STRA1.080e-762.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5K1BFY8_9MAGN1.110e-758.06C3H1-type domain-containing protein (Fragment) n=8... [more]
A0A0K9PVF3_ZOSMR2.090e-758.82Zinc finger CCCH domain-containing protein 32 n=1 ... [more]
A0A833VNF5_9POAL2.720e-751.16Zinc finger CCCH domain-containing protein ZFN-lik... [more]
A0A0D3DRD5_BRAOL3.780e-759.09Uncharacterized protein n=10 Tax=Brassica TaxID=37... [more]
A0A830BFS7_9LAMI3.910e-746.94Zinc finger CCCH domain-containing protein 43 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1117contigH-akashiwo_Contig1117:280818..281788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog90675.XP_010503473.1
PFAMszf-CCCH
Model size429
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.45e-09
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota,37NYP@33090|Viridiplantae,3G80J@35493|Streptophyta,3HMJ6@3699|Brassicales
Descriptionzinc finger
Cds size360
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.0805018-CDS-H-akashiwo_Contig1117:280817..2808631681387087.0805018-CDS-H-akashiwo_Contig1117:280817..280863Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 280818..280863 -
1681387087.0937858-CDS-H-akashiwo_Contig1117:281105..2811901681387087.0937858-CDS-H-akashiwo_Contig1117:281105..281190Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 281106..281190 -
1681387087.10232-CDS-H-akashiwo_Contig1117:281387..2814531681387087.10232-CDS-H-akashiwo_Contig1117:281387..281453Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 281388..281453 -
1681387087.110685-CDS-H-akashiwo_Contig1117:281558..2817211681387087.110685-CDS-H-akashiwo_Contig1117:281558..281721Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 281559..281721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.1216185-UTR-H-akashiwo_Contig1117:281721..2817881681387087.1216185-UTR-H-akashiwo_Contig1117:281721..281788Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1117 281722..281788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1117.3.1prot_H-akashiwo_Contig1117.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1117 280818..281721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1117.3.1

>prot_H-akashiwo_Contig1117.3.1 ID=prot_H-akashiwo_Contig1117.3.1|Name=mRNA_H-akashiwo_Contig1117.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=120bp
MHGLVPGFENQFHNLRKSERQRNLLLRDTTMYGNNVVHDSNKRSLEAIQS
SYGEDPSKRQMTGVGQGYDTGAQQNAAEQYPRNPGQDPCAFYVRTGSCKF
GQACKFDHPPQPAGEGRHKL
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mRNA from alignment at H-akashiwo_Contig1117:280818..281788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1117.3.1 ID=mRNA_H-akashiwo_Contig1117.3.1|Name=mRNA_H-akashiwo_Contig1117.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=971bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:280818..281788- (Heterosigma akashiwo CCMP452)
CTCACTTCAAAAACAATTGCTCTTCGCCGCCAGGTAACCGCTGAACCACG
CCCCAAGCCACACGTTGATGCACGGCTTGGTCCCAGGTTTTGAAAACCAA
TTCCATAATCTCCGAAAATCTGAAAGGCAGCGCAATTTGCTCCTCCGAGA
CACCACCATGTATGGAAATAATGTTGTACATGACTCCAACAAACGTTCAC
TGGAAGCAATACAGTCATCATATGGCGAAGGTAGGCGTAATGCTCGCATA
ATGGCAATGATTTCTTTATGTATGAAGCAAATCGAGTATTTTAGCTAAAA
ACATCAGGCCAAACTCTTCTCTGACATGAAAACAGACCCTTCCAAGCGGC
AAATGACGGGTGTTGGGCAGGGTTATGATACTGGGGCGCAGCAAAACGCT
GGTGCGCTGAATACGAGTTCACTGTAATTGTTTTCCTCTCCTTTTCCCTT
ACTCGTGATGTGGCAAGGGAATGTGGGGACAGGTTGCTCAGAATAGTTTT
CATATATGTAGACATATTATACATAACCAATATTTTCATTTGTTTGAATA
TCAATGTTTTTCTTTTTGTCCTCCCCCCCCCTCCCCCAACTTTTGCAGCA
GAGCAGTACCCAAGGAACCCCGGGCAGGACCCCTGTGCTTTCTATGTGCG
GACTGGAAGTTGCAAGTTTGGACAAGCATGCAAGTGAGTTTGCCGGCGCC
AGGGCTTCCAGCTGAGGTTTCATCCAGCCTTCCGGTGTATTTGGGTCTTG
ATCAGAAGCAATGATTGCCATTGTTGCCATTGTTTCACTTTCTCTTTATG
TATTGATTCTGAACAGGCCCTGGCTTCCTGCTTCCAAGCTCAACTTTTCC
TCCACCCCTCCTCCCCTTGCTCCCACCGCCCCACTTGAAATGGACTGCTT
ACATTCACGCTTTGGTTTGGGCCAGGTTTGACCACCCGCCCCAGCCCGCA
GGGGAGGGCAGACACAAGCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1117:280818..281788-

>mRNA_H-akashiwo_Contig1117.3.1 ID=mRNA_H-akashiwo_Contig1117.3.1|Name=mRNA_H-akashiwo_Contig1117.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=360bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:280818..281788- (Heterosigma akashiwo CCMP452)
ATGCACGGCTTGGTCCCAGGTTTTGAAAACCAATTCCATAATCTCCGAAA
ATCTGAAAGGCAGCGCAATTTGCTCCTCCGAGACACCACCATGTATGGAA
ATAATGTTGTACATGACTCCAACAAACGTTCACTGGAAGCAATACAGTCA
TCATATGGCGAAGACCCTTCCAAGCGGCAAATGACGGGTGTTGGGCAGGG
TTATGATACTGGGGCGCAGCAAAACGCTGCAGAGCAGTACCCAAGGAACC
CCGGGCAGGACCCCTGTGCTTTCTATGTGCGGACTGGAAGTTGCAAGTTT
GGACAAGCATGCAAGTTTGACCACCCGCCCCAGCCCGCAGGGGAGGGCAG
ACACAAGCTG
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