mRNA_H-akashiwo_Contig1117.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1117.2.1
Unique NamemRNA_H-akashiwo_Contig1117.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1117.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1117contigH-akashiwo_Contig1117:272486..274674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.851026-CDS-H-akashiwo_Contig1117:272485..2725841681387086.851026-CDS-H-akashiwo_Contig1117:272485..272584Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 272486..272584 -
1681387086.8593507-CDS-H-akashiwo_Contig1117:274623..2746741681387086.8593507-CDS-H-akashiwo_Contig1117:274623..274674Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 274624..274674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1117.2.1prot_H-akashiwo_Contig1117.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1117 272486..274674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1117.2.1

>prot_H-akashiwo_Contig1117.2.1 ID=prot_H-akashiwo_Contig1117.2.1|Name=mRNA_H-akashiwo_Contig1117.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
MVPGMDPLTAASLQLLQGIPGMDAVVAQALQTQALQAQALHTQALQAQV*
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mRNA from alignment at H-akashiwo_Contig1117:272486..274674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1117.2.1 ID=mRNA_H-akashiwo_Contig1117.2.1|Name=mRNA_H-akashiwo_Contig1117.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2189bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:272486..274674- (Heterosigma akashiwo CCMP452)
ATGGTCCCCGGCATGGACCCCCTGACGGCCGCCTCGCTCCAGCTGCTCCA
GGTGCCCCGCCGCTGCCTGCCCCCGCCCCCTCTTCTTAAGGAACGGGAGC
ACTTCTGCCCACCACTGTTTTCTTCCCGGAGGGTTGATGCCTGGGCGGCG
GCGGCGGCGGCGGCGGCGGCATATTGTGACCATTACTCAGCAGGCAGTCA
GCCAGCTTTTTAGAACCCTGCTCTCTGGGTCGGTCTTCTCAAGGAGCTGT
AGGATATAGCACTTCCGCCTGTAACTACTTTTTTCTTCCCCGAGGGTTGA
GCATGGCACGACGTTCATTGATTGGACTGGGTTGACTGTACTTCGCTTAG
AAAGACATGTATGATGATCTTGATTGATGATAACTCCTTTCACGGAATTG
TCCTCGAGGTACATGTAACCATTGGCAGTAGTTTCTGTAACTGTCAGCGT
TGAAAAACGAGCAGCAGGCAGCCAGTAGTCGTAGGCTGATCGGACGGGTT
CCTCGAAACTCAGAAGATCATATAACTGTCATGTGGTGAGAAGCGGCTGG
TGCTTCTCGCAACCAGAGGGGCAATGCGATCTCTATCAGAGCCATCTCGA
CTGACCGGGTGGAGACAGATGCAACTTTTAAGGACGCGAATTGTTGGAGG
AAGCGCCAACAGAAGATAAAGTTGAAAGACTGGACCTGGACCAGGGCTGT
GAGAAGCGGCTGGTGCTTCTCGCAACCAGAGGGGCAATGCCGATGTCTAT
CAGAGCCATCTCGACTCACCGGGTGGAGACAGATGCAACTTTTATTAACG
TTGTGTGTGGCATCGTCCAGTTCACACAGCTAAGCAGCTCAGTCAGCAAA
ACCCTTATTTGCTAGCCACAAGCCCCCGGGTTCGATCCCCGTTGACGACC
ATCTTGGTCTGTCTTCTACTTCTTCTATCTTCAGAGAAGAAGAAGTCGTG
GCTCTGTTCTGATTGGTTGTAAGCACAAGCATGACGTGTGCGTCGTGTGT
CAAGCAATGAAGAAGTACGTACTACTGTTGTTACTTATAGTTTCATGTTG
TTTGGAAGCAGCACGAGCTGGCTGCTCTTTCCTTCTTCTACTTTCCTACT
AACTCCCTTTAATATCAACTTTACTTTGACATCAATATTTGACTGAGGCT
TGCCTCCCCATCTATAGGCCGCCAGGCCTTCCTGTCATTATGGCATTGAG
CTTTGAGCCACAGGCTTTATCTCTCTTAACATCACACATCGAAGGACGTG
GATTGTTGGAGGAAGCGCCAACAGAAGAGACAGTCGAAAGACTGGCCCTG
GACCAGGGCTGGCCAAAGGGCAACAGAGCACGTAGGGTTTGCACATGCGG
AGTTTCCAAGTCACTCAGTATAACGAGACGTTGTCCGACGAAGTGCTCAG
ATGCCATGGCGTGTGTGAGAAGACAGAGGTTGTGGCTCAGGATGTGAGGA
GGAGCACATTGCATGAGTGATACAAACATGGAAAATATTTATATGTAGAC
CAATATACACCCTATAGCAGTTTGCCATTTGGTTCACTGCTGACAAGGTA
AGGTGTGTTGATGACAGCCGGCCACCAGCCTCGGCTGCTGGTATGCTAGA
AACAACTTGTCCACGTCAAATCTTGTGTAATGATTCAAAGCCTTTGGTGA
GCATCATACACATGTGTCTGATTTTTTACTGATCTCCTCTAGCATTGCTG
AGCTATCAAAAATACAAACGAGTATAATGTAAAAAATTACTTCAAACCAA
TATCGTTGATATATATGGAGAGGCTTGATGGCCACAAGATTCCTACTTGT
GCACGTCGAAAGACGGGACAAGGCCAGCAGGCCAAAGAAGAACGGAACGC
GAAGGGCCTCGCGCGGCCACTCAAGCCGGGCGCGGCGCGCCTTCGAACCG
TCGGCGGGGCGACGAACGGAGCGCTCGGACGCCACGGCGCGCGCGTAAGC
GGAGCGGACAGGGGGCGCGGCCCAGGACGCCAGAGGAGCACCTTGCGGTC
GCACGGATTATATACTACACACAGTGCGTTTGCACGAAATGAAATCCAAA
GAAAAAAAAAAAAAACGCCCTGGTGGCGGGATGGGGCGAGGGCATCCCGG
GGATGGACGCGGTGGTGGCACAGGCGTTGCAGACCCAGGCGCTGCAGGCC
CAGGCGCTGCACACGCAGGCCCTGCAGGCCCAGGTATAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1117:272486..274674-

>mRNA_H-akashiwo_Contig1117.2.1 ID=mRNA_H-akashiwo_Contig1117.2.1|Name=mRNA_H-akashiwo_Contig1117.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:272486..274674- (Heterosigma akashiwo CCMP452)
ATGGTCCCCGGCATGGACCCCCTGACGGCCGCCTCGCTCCAGCTGCTCCA
GGGCATCCCGGGGATGGACGCGGTGGTGGCACAGGCGTTGCAGACCCAGG
CGCTGCAGGCCCAGGCGCTGCACACGCAGGCCCTGCAGGCCCAGGTATAG
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