mRNA_H-akashiwo_Contig1117.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1117.1.1
Unique NamemRNA_H-akashiwo_Contig1117.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A5C3R384_9AGAR (SWIB/MDM2 domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3R384_9AGAR)

HSP 1 Score: 101 bits (252), Expect = 8.890e-24
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS+ LA+++  S++SRPQVVKQLWVYIKGN LQNPENKREILCDDKL+ +F V+K+ MF M+K+L  H
Sbjct:  182 LSEPLADVLSVSKLSRPQVVKQLWVYIKGNTLQNPENKREILCDDKLRLVFNVDKIDMFKMNKVLGDH 249
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A4Q2DRH9_9AGAR (SWIB/MDM2 domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DRH9_9AGAR)

HSP 1 Score: 101 bits (251), Expect = 1.970e-23
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKHFLD 214
            LS+ LA++V   ++SRPQVVKQLWVYIK N+LQNP NKREI+CD KLK +F VEK+ MF M+K+L KH L+
Sbjct:  210 LSEALADVVSAPKLSRPQVVKQLWVYIKENELQNPGNKREIMCDTKLKAVFGVEKIDMFTMNKVLGKHLLE 280
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A067PXL8_9AGAM (SWIB/MDM2 domain-containing protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067PXL8_9AGAM)

HSP 1 Score: 100 bits (249), Expect = 3.230e-23
Identity = 43/68 (63.24%), Postives = 59/68 (86.76%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS++LA +VG  ++SRPQVVKQLWVYIKGN+LQNPENK+EI+CD+KL+ +F  +K+ MF M+K+L +H
Sbjct:  200 LSESLAAVVGVDKLSRPQVVKQLWVYIKGNELQNPENKKEIMCDEKLRAVFSRDKIDMFTMNKVLGQH 267
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: L2GCJ2_COLFN (Swib mdm2 domain protein n=3 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=L2GCJ2_COLFN)

HSP 1 Score: 100 bits (248), Expect = 4.290e-23
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS  LAE+VG+ Q+SRPQVVK+LW +IKGNDLQ+PENKR+ILCDDK++ +F+V KV MF M+K++  H
Sbjct:  194 LSSPLAELVGEQQLSRPQVVKKLWEHIKGNDLQDPENKRQILCDDKMQAIFKVPKVDMFQMNKMIGSH 261
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A4Y7TWJ5_9AGAR (SWIB-domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TWJ5_9AGAR)

HSP 1 Score: 98.6 bits (244), Expect = 1.640e-22
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS+ LA I+   ++SRPQVVKQLWVYIKGN+LQNP+NKREI+CD K++ +F V+K+ MF M+K+L KH
Sbjct:  192 LSEPLAAIIEVDKLSRPQVVKQLWVYIKGNELQNPDNKREIMCDSKMRAVFGVDKIDMFQMNKVLGKH 259
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: UPI0018FF1A22 (swib mdm2 domain protein n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI0018FF1A22)

HSP 1 Score: 98.2 bits (243), Expect = 3.280e-22
Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LSD LAE+VG+ Q+SRPQVVK+LW +IKGNDLQ+P+NKR+ILCDDK++ +F+  KV MF M+K++  H
Sbjct:  213 LSDPLAELVGEPQLSRPQVVKKLWEHIKGNDLQDPDNKRQILCDDKMQAIFKQPKVDMFQMNKMIGAH 280
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A8H6KW52_9PEZI (Upstream activation factor subunit spp27 n=3 Tax=Colletotrichum orchidearum species complex TaxID=2707337 RepID=A0A8H6KW52_9PEZI)

HSP 1 Score: 97.4 bits (241), Expect = 4.870e-22
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LSD LAE+VG++Q+SRPQVVK+LW +IKGN LQ+PENKR+ILCDDK+  +F+  KV MF M+K++  H
Sbjct:  196 LSDPLAELVGETQLSRPQVVKKLWEHIKGNQLQDPENKRQILCDDKMHAIFKQPKVDMFQMNKMIGSH 263
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A1W0A988_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A988_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.930e-22
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKHFLDK 217
            LS  L EI+G+S +SRPQVVK+LW YIK N+LQNPENK+EI+C+D+L  LF  +KV+MF M+K+L  HFL K
Sbjct:  245 LSKELTEILGESTLSRPQVVKRLWAYIKENELQNPENKQEIMCNDRLTALFGEDKVTMFSMNKLLKPHFLGK 316
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A5C3MKH5_9AGAR (SWIB/MDM2 domain-containing protein n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3MKH5_9AGAR)

HSP 1 Score: 97.1 bits (240), Expect = 8.010e-22
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS+ LA ++   ++SRPQVVKQLWVYIKGN+LQNP NKREI+CD +LK +F VEK+ MF M+K+L +H
Sbjct:  208 LSEPLAAVLQVDKLSRPQVVKQLWVYIKGNELQNPSNKREIMCDSRLKAVFGVEKIDMFKMNKVLGEH 275
[Close]
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Match: A0A8H5B5Z3_9AGAR (SWIB/MDM2 domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5B5Z3_9AGAR)

HSP 1 Score: 97.1 bits (240), Expect = 8.720e-22
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 2 
Query:    2 LSDTLAEIVGDSQMSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHKILSKH 205
            LS+ LA ++    ++RPQVVKQLWVYIKGN+LQNP NKREI+CD KLK +F V+K+ MF M+K+L KH
Sbjct:  209 LSEPLAAVLETPMLARPQVVKQLWVYIKGNELQNPNNKREIMCDTKLKAVFGVDKIDMFTMNKVLGKH 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C3R384_9AGAR8.890e-2467.65SWIB/MDM2 domain-containing protein n=1 Tax=Pterul... [more]
A0A4Q2DRH9_9AGAR1.970e-2364.79SWIB/MDM2 domain-containing protein n=1 Tax=Candol... [more]
A0A067PXL8_9AGAM3.230e-2363.24SWIB/MDM2 domain-containing protein n=1 Tax=Jaapia... [more]
L2GCJ2_COLFN4.290e-2364.71Swib mdm2 domain protein n=3 Tax=Colletotrichum gl... [more]
A0A4Y7TWJ5_9AGAR1.640e-2263.24SWIB-domain-containing protein n=1 Tax=Coprinellus... [more]
UPI0018FF1A223.280e-2263.24swib mdm2 domain protein n=1 Tax=Colletotrichum ka... [more]
A0A8H6KW52_9PEZI4.870e-2263.24Upstream activation factor subunit spp27 n=3 Tax=C... [more]
A0A1W0A988_9STRA5.930e-2262.50Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A5C3MKH5_9AGAR8.010e-2263.24SWIB/MDM2 domain-containing protein n=1 Tax=Crucib... [more]
A0A8H5B5Z3_9AGAR8.720e-2263.24SWIB/MDM2 domain-containing protein n=2 Tax=Tulose... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1117contigH-akashiwo_Contig1117:203375..203916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog208960.XP_007262077.1
PFAMsDEK_C,SWIB
Model size403
Max annot lvl4751|Fungi
KEGG koko:K15223
Hectar predicted targeting categoryother localisation
GOsGO:0000120,GO:0000500,GO:0000976,GO:0000987,GO:0001013,GO:0001067,GO:0001163,GO:0001165,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0006139,GO:0006325,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1990837
Exons2
Evalue1.8e-19
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota,39UCZ@33154|Opisthokonta,3P17X@4751|Fungi,3V251@5204|Basidiomycota,228W8@155619|Agaricomycetes,3H4SS@355688|Agaricomycetes incertae sedis
DescriptionSWIB-domain-containing protein
Cds size201
COG categoryK
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.0019655-UTR-H-akashiwo_Contig1117:203374..2035361681387087.0019655-UTR-H-akashiwo_Contig1117:203374..203536Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1117 203375..203536 -
1681387087.0340831-UTR-H-akashiwo_Contig1117:203876..2039161681387087.0340831-UTR-H-akashiwo_Contig1117:203876..203916Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1117 203877..203916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.015002-CDS-H-akashiwo_Contig1117:203536..2036681681387087.015002-CDS-H-akashiwo_Contig1117:203536..203668Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 203537..203668 -
1681387087.0241716-CDS-H-akashiwo_Contig1117:203807..2038761681387087.0241716-CDS-H-akashiwo_Contig1117:203807..203876Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 203808..203876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1117.1.1prot_H-akashiwo_Contig1117.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1117 203537..203876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1117.1.1

>prot_H-akashiwo_Contig1117.1.1 ID=prot_H-akashiwo_Contig1117.1.1|Name=mRNA_H-akashiwo_Contig1117.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
MSRPQVVKQLWVYIKGNDLQNPENKREILCDDKLKGLFEVEKVSMFGMHK
ILSKHFLDKVVDNDAS*
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mRNA from alignment at H-akashiwo_Contig1117:203375..203916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1117.1.1 ID=mRNA_H-akashiwo_Contig1117.1.1|Name=mRNA_H-akashiwo_Contig1117.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=542bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:203375..203916- (Heterosigma akashiwo CCMP452)
TCTATCTGATACTCTCGCAGAGATTGTTGGTGACAGTCAAATGAGTCGAC
CTCAGGTGGTGAAGCAACTCTGGGTATACATTAAGGGAAATGATCTGCAG
AATCCAGAGGTGAGTCAGCTCGCTATCTTCCTCTTTTGGCCTAGCCTCGA
AAAATTCTACCTAAAATCATCCATCAACTCGTTTTCACTTTCAAGCCTTC
CCTATTCTCCATCCACTGAATCAAATATTTCCCCCTTCTACTTAATAGAA
CAAGCGTGAAATTCTGTGCGATGATAAGCTCAAAGGGCTTTTTGAAGTGG
AAAAGGTTTCGATGTTTGGAATGCACAAAATTTTGTCAAAGCATTTCCTT
GACAAGGTCGTCGACAATGATGCAAGCTAGCTAGATATTTGCCACTAATA
ACAGTTATTGAGACAATTTTCAACTGCAATGATGGGTTTGTTGTGGTTTA
TCTTTTTTATGTTATCCTGTTTTTATTACTTTCCCACTCCTCCTGTTTTG
CATTTGTCATTGATCAGTTGTCGTATTTGTTGACCTGGGATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1117:203375..203916-

>mRNA_H-akashiwo_Contig1117.1.1 ID=mRNA_H-akashiwo_Contig1117.1.1|Name=mRNA_H-akashiwo_Contig1117.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:203375..203916- (Heterosigma akashiwo CCMP452)
ATGAGTCGACCTCAGGTGGTGAAGCAACTCTGGGTATACATTAAGGGAAA
TGATCTGCAGAATCCAGAGAACAAGCGTGAAATTCTGTGCGATGATAAGC
TCAAAGGGCTTTTTGAAGTGGAAAAGGTTTCGATGTTTGGAATGCACAAA
ATTTTGTCAAAGCATTTCCTTGACAAGGTCGTCGACAATGATGCAAGCTA
G
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