mRNA_H-akashiwo_Contig1111.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1111.8.1
Unique NamemRNA_H-akashiwo_Contig1111.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1111.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1111contigH-akashiwo_Contig1111:128620..130088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size502
Hectar predicted targeting categorysignal peptide
Exons3
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.5562563-UTR-H-akashiwo_Contig1111:128619..1287781681387085.5562563-UTR-H-akashiwo_Contig1111:128619..128778Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1111 128620..128778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.5644178-CDS-H-akashiwo_Contig1111:128778..1288561681387085.5644178-CDS-H-akashiwo_Contig1111:128778..128856Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 128779..128856 +
1681387085.5732496-CDS-H-akashiwo_Contig1111:129081..1292911681387085.5732496-CDS-H-akashiwo_Contig1111:129081..129291Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 129082..129291 +
1681387085.5829134-CDS-H-akashiwo_Contig1111:130034..1300881681387085.5829134-CDS-H-akashiwo_Contig1111:130034..130088Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 130035..130088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1111.8.1prot_H-akashiwo_Contig1111.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1111 128779..130088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1111.8.1

>prot_H-akashiwo_Contig1111.8.1 ID=prot_H-akashiwo_Contig1111.8.1|Name=mRNA_H-akashiwo_Contig1111.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
MSMLKPLTLLSLCLGWVLHLSCAFRQPPLLVHTSTRMSSTTKCDNRGRKE
KTIISLNSDGGYPEDGNAMSEEEWDQHMRILERQLQMIKNNDSLLEAARR
GNQRAGTEGGVVPP
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mRNA from alignment at H-akashiwo_Contig1111:128620..130088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1111.8.1 ID=mRNA_H-akashiwo_Contig1111.8.1|Name=mRNA_H-akashiwo_Contig1111.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:128620..130088+ (Heterosigma akashiwo CCMP452)
GAACAAGCGCCACCATCTGTCCGTATTCTTTCTTCCTGCTGGAGCAAAAG
GGCTCATTTGGAAATAGCCGCATCAAAATCATACTGCCGAGCTGCAACTA
GTTTTGCAGGAACAAACATAAATTAACGGAACTTATTGCTGTATCTACAT
ATCGAGGAAATGAGCATGCTCAAGCCGTTGACTCTGCTTTCTTTGTGTTT
AGGCTGGGTGCTGCATCTCAGCTGTGCTTTCCGCCAGGTTGTAGGAAGGG
TACTTGACGACTGATGGTGTCCTTCCAGTTCATATACCTACTAGTATAAT
AGGCTTGTTGTGATTCCTTGCAACATCCATCAGCATTTTTTTCAAAACTT
GAGCTGCATACACCAGTAATGATGACTTTATTGTGGAAATGATGTACTGT
TCTGTCCTTATCTGCCCTGCTGCTTGCTCACATTATCAACAATATATATA
TAATATAATAAGCCACCTCTTCTAGTGCACACCAGTACGAGGATGTCATC
CACAACAAAGTGTGACAACAGAGGGAGGAAAGAAAAAACAATAATATCAC
TTAATAGTGATGGTGGCTATCCAGAGGATGGTAATGCAATGAGTGAAGAG
GAATGGGACCAGCATATGAGGATTCTGGAACGGCAACTTCAGATGATTAA
GAACAATGATTCCCTTCTGGAGGTAAACATTTCGACTTTTTATCATCACA
CAATAAGTGTCTGGTGAAGAACCTAAGTAGCAATCAAACCTACCAAAAAA
TCCCCATCATGCTTGTTCCGGATCGTTGATGTAAGACTTCACAACAACAA
CATTTGATTGAAATGAAAGTGATCACTGATGGTATGGAACCATTAATTAA
TCTACTCTACTAGCAAATGATACGCCTCTCCAGCTCCCAACGTTTCGACA
TCAAGTCATGCCTTCTTCGCAGAGTCACCAAGTTGGCCAAACTCCAACTA
GGTCCCATCAGTGTAATGATGAAGGTACTCCAGCCAGCACAACAACACCA
ATAGCAGATGAGACAAAACCGGTGACGGTTACACCCCTCCTCGCTCCTCC
TCCTCCTCCTTCCATTCCTGCTGCTGCCAACAATAATTCAATTAAAATCT
CAACAAAGCGGGGGATGGGGGCAACAGCGTAGCTATATCATAATATTTTC
ATCGAAAATAACCTCAGTACTGCATTGGTCTCCCTTCAAACCAATTTTTT
AAAGCTGGGATAACACCACAAGAAAATGGAAGGACCAAGAAACAACATAG
GTCAGCCTTAGCATCACTGTCATGAAGAAGGACCAATGTCCACCAGTAGT
AGGGAACCCACCCAGGAATCCAGCTGGCTGGTCCTGTAGCAAAGAACCAA
CCTGAAAAGCCCGCCCCTTTTTCCCGGTCTTCTTTCTTCTTTGGTATATT
TTGCTGAATCGGCAGGCCGCCAGGAGAGGCAACCAAAGGGCCGGGACAGA
AGGGGGGGTGGTGCCACCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1111:128620..130088+

>mRNA_H-akashiwo_Contig1111.8.1 ID=mRNA_H-akashiwo_Contig1111.8.1|Name=mRNA_H-akashiwo_Contig1111.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:128620..130088+ (Heterosigma akashiwo CCMP452)
ATGAGCATGCTCAAGCCGTTGACTCTGCTTTCTTTGTGTTTAGGCTGGGT
GCTGCATCTCAGCTGTGCTTTCCGCCAGCCACCTCTTCTAGTGCACACCA
GTACGAGGATGTCATCCACAACAAAGTGTGACAACAGAGGGAGGAAAGAA
AAAACAATAATATCACTTAATAGTGATGGTGGCTATCCAGAGGATGGTAA
TGCAATGAGTGAAGAGGAATGGGACCAGCATATGAGGATTCTGGAACGGC
AACTTCAGATGATTAAGAACAATGATTCCCTTCTGGAGGCCGCCAGGAGA
GGCAACCAAAGGGCCGGGACAGAAGGGGGGGTGGTGCCACCA
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