mRNA_H-akashiwo_Contig1111.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1111.5.1
Unique NamemRNA_H-akashiwo_Contig1111.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A7S4DE18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DE18_HETAK)

HSP 1 Score: 846 bits (2185), Expect = 1.870e-291
Identity = 416/416 (100.00%), Postives = 416/416 (100.00%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR
Sbjct:  938 PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1353          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A7S3Y7Z7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7Z7_HETAK)

HSP 1 Score: 769 bits (1985), Expect = 2.050e-266
Identity = 388/396 (97.98%), Postives = 390/396 (98.48%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLA-ISKLV-GFEKPG-GGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLS 1179
            PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMA FAHDLATGQLLPATR+GL  ISKLV GFEKPG GGARPVAISS WRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDL+DNQRAQIHLPIRLGGFGLLS
Sbjct:  938 PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMAHFAHDLATGQLLPATRKGLLEISKLVVGFEKPGRGGARPVAISSIWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLSDNQRAQIHLPIRLGGFGLLS 1333          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4GFY2_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GFY2_VITBC)

HSP 1 Score: 222 bits (566), Expect = 2.270e-60
Identity = 158/442 (35.75%), Postives = 219/442 (49.55%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPA--GGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPD----PIC--LLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSH-----TLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPR-------PGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKE--LDDPQVAL----LILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            PRG A G  G+RYEHL++L+  A    D+ P+ +F   +  G L P   + LA ++L   EKPGGG RP+AI    RR V + LC  +K  + E   P QFAVG  AG EKL + AQT +   D  SPD    P+   LL +D  NAFN  SRQ  +  L  ++P +V +  Q+Y    PL +        T+ SR+G QQGD  G FLFCL  +PAL R+      A      DD L  +  S + +      E   A  L + L KC A+ P        P A+   G+ A    S EGI+ L  P GT AF++R ++++  +   LL  +    ++D   A+    L+LR   +PR ++  R +   S  ++     HD        HI     L+ + R Q+ LPIRLGGFGL+S      A Y GS    + DVW R
Sbjct: 1376 PRGSAAGPTGWRYEHLQVLVGEAHTNADAVPVLKFVQRMLDGDLPPVVTKLLAAARLFALEKPGGGVRPIAIGDALRRWVTRALCLQHKLEFEEEFRPHQFAVGTSAGGEKLFRTAQTYIQTQDAASPDADGPPLTRTLLSLDCRNAFNEISRQRIVDELAAKHPAMVAFFWQFYGTAAPLWYTMEGGRVETVHSRQGVQQGDVAGPFLFCLAFQPALRRLQEGFPDALVGGFMDDGLGGMDESSVPSFLTAAEEAFRAINLVLRLDKCHAWSPHWRSAADVPTAITRRGVRA----STEGIILLSAPIGTPAFVERTVNEVVASHQRLLDAVVAFAVNDGDYAVQGANLLLRYCGSPRFLYWCRLLA-PSPSVLAAARAHDAAKVAAFAHIQRTGALSLSARRQVQLPIRLGGFGLVSSARVAPAAYLGSVAATVGDVWDR 1812          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4G029_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G029_VITBC)

HSP 1 Score: 184 bits (468), Expect = 1.650e-47
Identity = 142/433 (32.79%), Postives = 197/433 (45.50%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLL----PPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSH-----TLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVS-----YEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDP--QVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLV-DLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            PRG A G  G+RYEHL+  +      A   + P+  F   +  G +  +    L+ ++L    K  GG R +A+    RR V K +C   K  + E   P QFAVG  AG EK+ +  QT +     DS D   L+ +D  NAFNS   Q  +  L  ++P LV +  Q+Y  P  L +        T+ ++EGTQQGD  G FLFCLGL PAL ++          A  DDI                  + G    RV   +CC    +P   QD+ + AD+  S      EGI  LG P G  +FI   L+KI  +   LL  I        Q + L+LR  A+PR+ +  R +P  S+  +    +HD  +      +     D  D+  AQ+ LPIRLGGFGL+S      A + GS      DV  R
Sbjct:  280 PRGSAAGPTGWRYEHLRACMGEGDASAEDSTVPLPSFVGRMLAGNMPDSCTTTLSAARLFALMKDNGGVRLIAVGDVLRRWVTKAVCMENKLAFEEDFSPLQFAVGTSAGGEKIFQACQTYMETRHDDS-DKRVLVTLDCKNAFNSSDGQAILDELGTKWPSLVDFFWQFYGSPAELWYRMEDGRIETILTQEGTQQGDAAGPFLFCLGLHPALVKLQGEFPDDFISAFMDDI------------------DGGLDETRVTRQECCM---KPRWQQDSDISADIAASGVKCSTEGITVLGCPLGGKSFIQHSLEKITSSHQPLLDAIVTFAQKGLQGSGLLLRYCASPRLNYWLRLLPRESDVSLAAAERHDAAIITAFRRMFRFPGDFPDSVSAQVQLPIRLGGFGLVSASTIARAAFLGSIGVTASDVSSR 690          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4GGP3_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GGP3_VITBC)

HSP 1 Score: 159 bits (401), Expect = 6.920e-41
Identity = 104/316 (32.91%), Postives = 157/316 (49.68%), Query Frame = 1
Query:    4 RGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPG------GGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSH-----TLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCP--RPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIAR 912
            RG A G  G+RYEHL+ +         P+ +   D+    +    R  L  ++L+G EK        GG RP+AI    RR V + +C L++  + E+L P Q+AVGV +G EK +   +T LG+   D    +  L +DA NAF++ SRQ  +  +   +PEL  +  QWY   + L F  +     T+ S +GTQQGD  G   +  GL   L R+ A        A +D++ +     ++   F+    E+G+    +   KC  +    RPG  + A +PA++ +  EGIL LGVP GTDAFI +    I R
Sbjct:   82 RGSAQGPTGWRYEHLRAIHDATS--HVPLTKLVDDIVQSNIPDHVRPILGSARLIGLEKTDDDGSLTGGVRPIAIGEVLRRWVTRAICFLHRERFGEALSPHQYAVGVSSGAEKCIAAIRTFLGSGAADEKRVV--LSLDAKNAFSTISRQAILEGVNDLFPELTDFFLQWYGASSDLWFAHYDGTVRTIASTQGTQQGDSGGPVWYVCGLHAVLRRLQAALPDCLVCAFADNVYIGRTEGRVEEAFRAAKTEMGSVDQILVDHKCVMWGEHFRPGMQRPASVPAEVALGEEGILVLGVPLGTDAFIAKHFAAIQR 393          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4GRQ9_9ALVE (Reverse transcriptase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRQ9_9ALVE)

HSP 1 Score: 160 bits (405), Expect = 1.880e-39
Identity = 135/452 (29.87%), Postives = 195/452 (43.14%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGA--RPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKL--LKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHT-----LWSREGTQQGDPFGSFLFCLGLRPALDRILA--------RCSGARALASSDDILLAV------------RASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGL----PADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVD---LTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            P+G A GV G+RY+HL   LP  G     +   A  LA G         LA  +     K   G   RP+ +    R  V + +   +   +   LGP QFAV   AGTEKL  ++  QT L    P S     +L +DA+NAFN+C RQ  M  +   +P+L  + + WY  P+ LVF   +     +   EG QQGD  G FLFC+GL+P+LD +          R  G    A  DD  +                  +   ++V    L ++GL +   K   + P    L++       P  +  S  G    G   GT  +     DK  R + EL Q ++E  DPQ A L+ R    P++++LTR M       +    Q DR + ++   I+G+ +   +    R Q +LP   GG GL+    T  AG  GS    L  V +R
Sbjct:   46 PKGSAQGVTGWRYKHLSYFLPRDGSVQARILHIATCLARGDAPVGFISLLAGGRCFALNKNARGTEVRPIVVGDVLRWWVTRAILLEFGIQFERHLGPLQFAVRTRAGTEKLFGIRCVQTYLQRS-PSS----AMLNLDASNAFNTCDRQVIMNQVYAHFPQLYSFFALWYRTPSDLVFRDQSGLLRRIICEEGVQQGDVVGPFLFCMGLKPSLDGLAMLGDLQAKHRGRGCFVGAFMDDASMVFPLCPFQQIPTDGHDDSILHAWRVDAARLQSFGLTLRPDKSSVHSPSWQGLRECPSAYPSPPGITPSLPGFRLCGAASGTTEYQSAHFDKKLREAWELSQAVEEYGDPQGAYLLFRFCVLPKLIYLTRIMG--DVITLGEWSQADRELGESWARIMGMTEQEWVYGEVRNQAYLPQYQGGLGLICFRATATAGLLGSCGATLSTVIER 490          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4I9I0_9ALVE (Reverse transcriptase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9I0_9ALVE)

HSP 1 Score: 148 bits (374), Expect = 2.400e-36
Identity = 125/444 (28.15%), Postives = 189/444 (42.57%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPP----AGGDSFPMARFAHDLATGQLLPATREGLAISKLVGFEK--PGGGARPVAISSTWRRHVGKTLCGLYKG-PWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHT-----LWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASS------DDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHL----GVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTR----AMPLYSEQLVDHLVQHDRRVADTLTHILGLVD--LTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            P+G A GV G+RYEHL  LLPP    A G    +     DL  G+  P   + LA  +     K   G   RP+ +    RR + + +  L KG P  + LG  Q+AV +  G  +L  +  T L  D          L++DA NAFN+  RQ  M  +   +PE+  ++  +Y   TP  F   T     ++S EG QQGD  G  LFC+GL+P LDR+  R        S+      DD+ L   +  L+  +    EE  ++ L++NL K  +    P  ++    P   P   E +       G   G   +  +  +++   +  L  ++    DPQ   L+ R    P++  L R    A+P    Q  D ++          T  LG+ +   T +Q  Q  LP+  GG G+            G +  CL DV +R
Sbjct:   19 PKGSAQGVMGWRYEHLSFLLPPDRTVARGRQAAVLSMGQDLVAGKASPEVLDLLACGRCFALRKNVDGSKIRPIMVGDVVRRWITRAVL-LEKGEPIEKHLGVRQYAVHIADGCARLYHMVWTALQLDKS-----AVFLRLDAQNAFNTADRQQIMDEVYTHFPEIYTFLMFFYGSRTPTFFQKDTGETKVIFSEEGVQQGDVMGPTLFCIGLKPVLDRLSERLREQHRSKSTFIGTFMDDVGLIFPSGGLSRAWAAAEEEFRSFNLKLNLGKDKSLAFSPAWVETERYPETSPAGLELLKDRFKLGGGAIGKWEYEKKYFEEVRDEAVGLAFKVANYRDPQEGWLLFRFCVLPKLGFLLRLMTDAIPTSMWQAADDML------LKKCTQGLGIAENEWTLHQTVQASLPLSQGGLGIHRYSLMQKCALVGCYASCLADVLKR 450          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A1Q9DL84_SYMMI (132 kDa protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DL84_SYMMI)

HSP 1 Score: 151 bits (382), Expect = 3.740e-36
Identity = 134/417 (32.13%), Postives = 179/417 (42.93%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPAGGDSF--PMARFAHDLATGQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKC--CAYCPRPGALQDAGLPADLPVSYEG---ILH----LGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAA-PRMVHLTRAMPLYSEQLVDHLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGS 1215
            P   APG  G R +HL+        +SF   +A     LA G+        LA + LV   KP GG RP+A+   +RR  GK L  L +        P Q  V V  G EK +   +    A          L+++D TNAFN  SR+  ++    ++P L  +    Y  PT L FG   L S  G QQGDP G  LF   L+P L   L   S   A+   DD +LA   + +A+    V     A GL +NL KC      P P A   A  PA+L    +G   +LH    LG   G+D+++    +     + ELL  I EL+DPQVA+ +LR  A   R+VH  R  P   + +   L   D  V        G +  T  Q  Q  L +   G GL S      A Y  S
Sbjct:  433 PAETAPGPTGLRVQHLRDACTAGSRESFLTQLAAVVQLLAQGRAPSFVAPVLAGAGLVALPKPSGGVRPIAVGEIFRRLTGKCLMALVQQEARTHFWPAQVGVAVKGGAEKAVHAVRA--WAQRHAGSATKALVKLDFTNAFNCISREAVLQQACTDFPALARWSVWCYRQPTRLQFGERALDSSSGVQQGDPLGPLLFSAALQP-LAADLRSSSLDIAVHFLDDGVLAGELADVASALVRVQRRAAAIGLTLNLGKCEVVVLGPVPSAALAASFPAELLQRSDGSSRVLHDFEFLGAAVGSDSYVHNHTEARVARAAELLDAIAELEDPQVAMRLLRACAGYARVVHSMRCNPPLYQHMA--LQAFDTMVRSCFAGFTG-IHPTAEQWRQAELGLAQAGLGLRSAAVHAPAAYLAS 843          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4I4T6_9ALVE (Reverse transcriptase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I4T6_9ALVE)

HSP 1 Score: 150 bits (380), Expect = 4.920e-36
Identity = 126/441 (28.57%), Postives = 192/441 (43.54%), Query Frame = 1
Query:    1 PRGGAPGVFGFRYEHLKMLLPPAG----GDSFPMARFAHDLATGQLLPATREGLAISKLVGFEK--PGGGARPVAISSTWRRHVGKTLCGLYKGPWAES-LGPTQFAVGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSHT-----LWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASS------DDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQDAGLP----ADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVDHLVQH-DRRVADTLTHILGLVD--LTDNQRAQIHLPIRLGGFGLLSPHFTHIAGYFGSFVGCLQDVWQR 1248
            P+G A GV G+RYEHL  LLPP G    G    +     DL  G+  P   + LA  +     K   G   RP+ +    RR + + +  L KG   E  LG  Q+AV    G  +L  + +T L  D          L++DA NAFN+  RQ  M  +   +PE+  ++  +Y  PTP  F   T     ++  EG QQGD  G  LFC+GL+P LDR+  R        S+      DD+ L   +  L+  +    EE  ++ L++NL K  +    P  ++    P    A L +S +G    G   G   +  +  +++   +  L  ++    DPQ   L+ R    P++  L R M   ++ +   + Q  D  +    T  LG+ +   T +Q  Q  LP+  GG G+            G +  CL DV +R
Sbjct:  356 PKGLAQGVTGWRYEHLSFLLPPDGTAARGRQAAVLSMGQDLVAGKAPPEVLDLLACGRCFALRKNVDGSKIRPITVGDVVRRWITRAVL-LKKGEQIEKHLGVRQYAVRTADGCARLYHMVRTALQLDKS-----AVFLRLDAQNAFNTADRQQIMDEVYTHFPEIYTFLMFFYGSPTPTFFQKDTGETKVIFLEEGVQQGDVMGPALFCIGLKPVLDRLSDRLREQHRSKSTFIGAFMDDVGLIFPSGGLSRAWAAAEEEFRSFNLKLNLGKDKSLAFSPAWVEIERCPETSRAGLELSKDGFKLGGGAIGKWEYEKKHFEEVRDEAVGLASKVANYHDPQGGWLLFRFCILPKLGFLLRLM---ADAIAISMWQAADDMLLKKCTRGLGIAENEWTLHQTVQASLPLSQGGLGIHRYSLMQKCALVGCYASCLADVLKR 787          
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Match: A0A0G4GU28_VITBC (Reverse transcriptase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GU28_VITBC)

HSP 1 Score: 143 bits (360), Expect = 1.610e-35
Identity = 101/288 (35.07%), Postives = 136/288 (47.22%), Query Frame = 1
Query:  118 GQLLPATREGLAISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFAVGVPAGTEKLLKLAQTIL------GADDPDSPDPICLLQIDATNAFNSCSRQDFMRLLRREYPELVPYVSQWYDHPTPLVFGSH-----TLWSREGTQQGDPFGSFLFCLGLRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLRVNLAKCCAYCPRPGALQD---AGLPADLPVSYEGILHLGVPFGTDAFIDRELDKIARTSCELLQEI 939
            G L P     LA ++L   EKPGGG RP+AI    RR V + LC  +K  + E   P QFAVG  AG EKL + AQT +      G D    P    LL +D  NAFN   RQ  +  L  ++  +V +  Q+Y     L +        T+ SR+G QQGD  G FLFCL  +PAL R+  +   A      DD L  +    + +       E  A  L + L KC A+ P   +  D   A +   +  S EGI+ L  P GT AFI+R ++K+      LL  +
Sbjct:    4 GDLPPLVTRLLAAARLFALEKPGGGVRPIAIGDVLRRWVTRALCMQHKLDFEEEFRPPQFAVGTSAGGEKLFRAAQTYIQTQDAVGQDADGRPITRTLLSLDCRNAFNEIGRQHIIDELAVKHLAMVAFFWQFYGIAALLWYTMEDGRVETIHSRQGVQQGDAAGPFLFCLAFQPALRRLQEQFPAALVGGFMDDGLRGMDERDVPSFLTAADAEFRAINLVLRLDKCHAWSPHWRSAADLPTATISRGVRASTEGIILLSAPIGTPAFIERTVNKVVAKHQRLLDAV 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1111.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DE18_HETAK1.870e-291100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y7Z7_HETAK2.050e-26697.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4GFY2_VITBC2.270e-6035.75Reverse transcriptase domain-containing protein n=... [more]
A0A0G4G029_VITBC1.650e-4732.79Reverse transcriptase domain-containing protein n=... [more]
A0A0G4GGP3_VITBC6.920e-4132.91Reverse transcriptase domain-containing protein n=... [more]
A0A0G4GRQ9_9ALVE1.880e-3929.87Reverse transcriptase domain-containing protein n=... [more]
A0A0G4I9I0_9ALVE2.400e-3628.15Reverse transcriptase domain-containing protein n=... [more]
A0A1Q9DL84_SYMMI3.740e-3632.13132 kDa protein n=2 Tax=Symbiodinium microadriatic... [more]
A0A0G4I4T6_9ALVE4.920e-3628.57Reverse transcriptase domain-containing protein n=... [more]
A0A0G4GU28_VITBC1.610e-3535.07Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1111contigH-akashiwo_Contig1111:125410..126657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15702057
PFAMsRVT_1,zf-RVT
Model size1248
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.12e-32
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1248
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.7513514-CDS-H-akashiwo_Contig1111:125409..1266571681387085.7513514-CDS-H-akashiwo_Contig1111:125409..126657Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 125410..126657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1111.5.1prot_H-akashiwo_Contig1111.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1111 125410..126657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1111.5.1

>prot_H-akashiwo_Contig1111.5.1 ID=prot_H-akashiwo_Contig1111.5.1|Name=mRNA_H-akashiwo_Contig1111.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=416bp
PRGGAPGVFGFRYEHLKMLLPPAGGDSFPMARFAHDLATGQLLPATREGL
AISKLVGFEKPGGGARPVAISSTWRRHVGKTLCGLYKGPWAESLGPTQFA
VGVPAGTEKLLKLAQTILGADDPDSPDPICLLQIDATNAFNSCSRQDFMR
LLRREYPELVPYVSQWYDHPTPLVFGSHTLWSREGTQQGDPFGSFLFCLG
LRPALDRILARCSGARALASSDDILLAVRASQLAAVFQVVVEELGAYGLR
VNLAKCCAYCPRPGALQDAGLPADLPVSYEGILHLGVPFGTDAFIDRELD
KIARTSCELLQEIKELDDPQVALLILRMSAAPRMVHLTRAMPLYSEQLVD
HLVQHDRRVADTLTHILGLVDLTDNQRAQIHLPIRLGGFGLLSPHFTHIA
GYFGSFVGCLQDVWQR
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mRNA from alignment at H-akashiwo_Contig1111:125410..126657-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1111.5.1 ID=mRNA_H-akashiwo_Contig1111.5.1|Name=mRNA_H-akashiwo_Contig1111.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:125410..126657- (Heterosigma akashiwo CCMP452)
CCACGCGGGGGCGCCCCGGGCGTCTTTGGTTTCAGGTATGAACACCTCAA GATGCTCCTGCCCCCAGCCGGCGGGGACTCTTTCCCCATGGCCCGCTTTG CCCACGATCTTGCCACAGGCCAACTCCTCCCGGCCACTCGCGAGGGGCTG GCGATCTCCAAGCTGGTAGGGTTCGAGAAGCCGGGGGGGGGCGCGCGGCC CGTCGCCATCAGCAGTACTTGGAGGCGGCACGTGGGCAAGACCCTCTGCG GCCTATACAAGGGACCCTGGGCCGAGTCGCTGGGGCCTACCCAGTTTGCG GTCGGCGTCCCGGCGGGCACCGAAAAGCTGCTGAAACTCGCCCAGACCAT CCTGGGCGCGGACGACCCTGACAGTCCGGACCCTATCTGCCTGTTGCAGA TTGACGCCACCAACGCGTTCAACTCCTGCTCGAGGCAGGACTTCATGCGG CTTCTCCGCAGGGAATACCCGGAGCTGGTGCCTTACGTCAGCCAGTGGTA TGATCATCCCACTCCCTTGGTCTTTGGCTCCCACACCCTGTGGAGCCGCG AAGGGACCCAGCAGGGCGACCCCTTTGGCAGCTTCCTCTTCTGCCTGGGG CTCCGCCCCGCCCTAGACCGAATCCTGGCGCGTTGCTCGGGCGCAAGGGC GCTGGCCTCGTCAGATGATATCCTCCTGGCTGTGCGAGCTAGCCAACTGG CGGCGGTCTTCCAGGTCGTCGTTGAGGAGCTGGGCGCCTATGGCCTTCGG GTCAACCTCGCCAAGTGCTGCGCCTACTGCCCGCGCCCGGGGGCCCTTCA GGACGCTGGCCTTCCCGCAGACCTCCCCGTGTCGTACGAGGGCATACTCC ACCTCGGTGTGCCCTTCGGCACCGACGCCTTCATCGACCGTGAGCTGGAT AAGATCGCCCGGACCAGCTGCGAGCTCCTGCAGGAGATCAAGGAGCTTGA CGACCCGCAGGTCGCCCTCTTGATCCTGCGGATGTCCGCGGCCCCCAGGA TGGTTCACCTGACGAGAGCCATGCCCCTCTACTCTGAGCAACTGGTAGAC CACCTTGTCCAGCATGACAGGCGGGTGGCAGACACGCTCACACACATTCT GGGTCTCGTTGACCTCACTGACAACCAGCGGGCCCAGATCCATCTCCCAA TCCGGCTCGGGGGCTTCGGCCTTCTCAGCCCCCACTTCACCCACATCGCA GGGTATTTCGGATCCTTCGTGGGTTGCTTACAGGATGTCTGGCAGCGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1111:125410..126657-

>mRNA_H-akashiwo_Contig1111.5.1 ID=mRNA_H-akashiwo_Contig1111.5.1|Name=mRNA_H-akashiwo_Contig1111.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1248bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:125410..126657- (Heterosigma akashiwo CCMP452)
CCACGCGGGGGCGCCCCGGGCGTCTTTGGTTTCAGGTATGAACACCTCAA
GATGCTCCTGCCCCCAGCCGGCGGGGACTCTTTCCCCATGGCCCGCTTTG
CCCACGATCTTGCCACAGGCCAACTCCTCCCGGCCACTCGCGAGGGGCTG
GCGATCTCCAAGCTGGTAGGGTTCGAGAAGCCGGGGGGGGGCGCGCGGCC
CGTCGCCATCAGCAGTACTTGGAGGCGGCACGTGGGCAAGACCCTCTGCG
GCCTATACAAGGGACCCTGGGCCGAGTCGCTGGGGCCTACCCAGTTTGCG
GTCGGCGTCCCGGCGGGCACCGAAAAGCTGCTGAAACTCGCCCAGACCAT
CCTGGGCGCGGACGACCCTGACAGTCCGGACCCTATCTGCCTGTTGCAGA
TTGACGCCACCAACGCGTTCAACTCCTGCTCGAGGCAGGACTTCATGCGG
CTTCTCCGCAGGGAATACCCGGAGCTGGTGCCTTACGTCAGCCAGTGGTA
TGATCATCCCACTCCCTTGGTCTTTGGCTCCCACACCCTGTGGAGCCGCG
AAGGGACCCAGCAGGGCGACCCCTTTGGCAGCTTCCTCTTCTGCCTGGGG
CTCCGCCCCGCCCTAGACCGAATCCTGGCGCGTTGCTCGGGCGCAAGGGC
GCTGGCCTCGTCAGATGATATCCTCCTGGCTGTGCGAGCTAGCCAACTGG
CGGCGGTCTTCCAGGTCGTCGTTGAGGAGCTGGGCGCCTATGGCCTTCGG
GTCAACCTCGCCAAGTGCTGCGCCTACTGCCCGCGCCCGGGGGCCCTTCA
GGACGCTGGCCTTCCCGCAGACCTCCCCGTGTCGTACGAGGGCATACTCC
ACCTCGGTGTGCCCTTCGGCACCGACGCCTTCATCGACCGTGAGCTGGAT
AAGATCGCCCGGACCAGCTGCGAGCTCCTGCAGGAGATCAAGGAGCTTGA
CGACCCGCAGGTCGCCCTCTTGATCCTGCGGATGTCCGCGGCCCCCAGGA
TGGTTCACCTGACGAGAGCCATGCCCCTCTACTCTGAGCAACTGGTAGAC
CACCTTGTCCAGCATGACAGGCGGGTGGCAGACACGCTCACACACATTCT
GGGTCTCGTTGACCTCACTGACAACCAGCGGGCCCAGATCCATCTCCCAA
TCCGGCTCGGGGGCTTCGGCCTTCTCAGCCCCCACTTCACCCACATCGCA
GGGTATTTCGGATCCTTCGTGGGTTGCTTACAGGATGTCTGGCAGCGT
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