mRNA_H-akashiwo_Contig1111.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1111.3.1
Unique NamemRNA_H-akashiwo_Contig1111.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1111.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1111contigH-akashiwo_Contig1111:22974..24564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size207
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.5189815-CDS-H-akashiwo_Contig1111:22973..231141681387085.5189815-CDS-H-akashiwo_Contig1111:22973..23114Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 22974..23114 +
1681387085.5280318-CDS-H-akashiwo_Contig1111:24498..245641681387085.5280318-CDS-H-akashiwo_Contig1111:24498..24564Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 24499..24564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1111.3.1prot_H-akashiwo_Contig1111.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1111 22974..24564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1111.3.1

>prot_H-akashiwo_Contig1111.3.1 ID=prot_H-akashiwo_Contig1111.3.1|Name=mRNA_H-akashiwo_Contig1111.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
RGGAARADAGHGAPGAGLLRRVRHFSPEGRPALLGLRGLRGRARPPLLLR
RDLRRAEELPALRPSFLL*
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mRNA from alignment at H-akashiwo_Contig1111:22974..24564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1111.3.1 ID=mRNA_H-akashiwo_Contig1111.3.1|Name=mRNA_H-akashiwo_Contig1111.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1591bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:22974..24564+ (Heterosigma akashiwo CCMP452)
CGCGGCGGCGCGGCCCGTGCCGACGCCGGACACGGAGCGCCGGGGGCTGG
TTTACTGCGACGTGTGCGGCATTTTTCGCCCGAGGGGCGACCGGCACTGC
TGGGACTGCGGGGGCTGCGTGGCCGAGCACGACCACCATTGGTGCGCACT
TTTTGTTGGGCGGTGTATTGAGGGTTGTACTCTTGGCACTCCACACATCC
CTAGTACAATAATTATCAACAGCTGCTACTTATCAAATACCTACTACTCT
AGTCCTGTCCATCTGCACCTCTCTTTCTTTTTGACTTCTTGTTTACACTA
TACTCACACGCAACAACAACTGGATCACGTTTGCAAGAGCTACATTTTAC
CTCCAGATCAGTGTGCTGAAAAAGACGAGACAAGGTCAAGCCGTTTTGAA
TTGATGGGCAGGGGGCGTGGTACGTCTTGCAACTTGAAACCCGTGTATGA
TGAACCTACTTTTTCCAAAACCTCAGCGAGATTGGCCTGGCGTCCTGCGT
AGCACTCACAGCACCTTTCCACCAGCTGAAGCAAGTACGCCTCCTGTCCA
TGCATTCAGAGACCATTCTCTATGGGACCGATGTCTGTGCATTGCGGTCT
CTTCGGAAAGTGATCATTCCGTGCAGTTTCGTGTATACTGTTCTATGATA
TGAGATGTCGCCGATATGGGTATGATGTATCTCCGACGCTTATTTCCGTT
TTTGTATCTTTGGTTATCAGTACATACTGGCGGGAAACTATTCGATTGGC
TACCATTGAATCGCTCTGTTGTTTACAACTCTAACCAATTGGAATGTATA
TCTGGAATGGAAACCAATGAACTCTTGGAGATGATAAAAAGGAGTTGTAA
CATTTGTGAGAATTGATGACAAATACATTTAGAGAAAATTATCAGACTGG
TTTGCTCTGCTTAGCACCACCACCACAACAGCAGCAGCAGCAGCAGCAGC
AGCTGTTGAACTATAGCTATTTATTATCTTAGTAGTAGAGACGGAGGCTC
TGCCTTCGGCGCCATCATAATTTCCTTTTTAATGTTTCAAATCTTTCACC
CTTTGGATTTATCCATGTTTTAGTATTTTTCCAGGCTCTGCTTTGCGGCT
GTTCTCTGGGCTTATGTGCTACTAAGCTTGCTATAAAGTATTATTAGACC
CAACACCCTGCAATATTTCAATGCTATAAACCCCTGGCAAATTTCAAAGG
TGCTGTAGAAGGTACATAAAATCCCAGGGCACATCTGGACAAAGATAGAT
AGTGGAAGTGGCAACTGGTACAATACTCAAGTTTTTGTCTCTGAATATAT
GGTAGAAGTACCAAGTTTTTGTCTCTGAATATTTGGTAGAAGTACAACGA
GGAGATGGGGGAGGGTAGAGTGGGTAGCTTTGCTATACTTTAAATTATTG
GTGCCCAATCCATGCCAAGGTTCCAGAGCTTGATCTGGGCCTGTAGGCAC
AATGCCAGAGTGAGGAGGATTGTGGATAAACCCACACCCCTCTTTCACCC
AGCCCCCGCTCCTCTGCCCCCCCAGCTTCTGCGGCGGGACCTGCGCCGGG
CGGAGGAACTACCGGCACTTCGCCCGTCCTTCCTCCTCTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1111:22974..24564+

>mRNA_H-akashiwo_Contig1111.3.1 ID=mRNA_H-akashiwo_Contig1111.3.1|Name=mRNA_H-akashiwo_Contig1111.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:22974..24564+ (Heterosigma akashiwo CCMP452)
CGCGGCGGCGCGGCCCGTGCCGACGCCGGACACGGAGCGCCGGGGGCTGG
TTTACTGCGACGTGTGCGGCATTTTTCGCCCGAGGGGCGACCGGCACTGC
TGGGACTGCGGGGGCTGCGTGGCCGAGCACGACCACCATTGCTTCTGCGG
CGGGACCTGCGCCGGGCGGAGGAACTACCGGCACTTCGCCCGTCCTTCCT
CCTCTGA
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