mRNA_H-akashiwo_Contig1110.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1110.6.1
Unique NamemRNA_H-akashiwo_Contig1110.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 214 bits (545), Expect = 3.900e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    4 KRNKCFHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            KRNKCFHLSQTSFIK  LAKFGLDYLPACKTPLDHTVDLTPTPGF+AELSDANLYRSMVG LAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT
Sbjct:   81 KRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 185          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 207 bits (526), Expect = 2.370e-65
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1
Query:    4 KRNKCFHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 309
            KRNKCFHLSQTSFIK  LAKFGLDYLPACKTP+DHTVDLTPTPGF+AELSDANLYRSMVG LAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL
Sbjct:  167 KRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 1.600e-16
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1
Query:   10 NKCFHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELSDAN 162
            NKCF+LSQ SF++  ++KFGLDYLPAC+TP+ +  DLTPTPGF+A L DAN
Sbjct:  359 NKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A8H4R3V9_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R3V9_9AGAR)

HSP 1 Score: 82.0 bits (201), Expect = 5.650e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   25 LSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELS-----DANL---YRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            LSQT FI  LL KFGL       TP+D  V L        E+S     D  L   Y +++G L ++A  TRP++A+ VH+L +   NP+PKH+ AV+R FRYLKGT
Sbjct: 1140 LSQTHFIDKLLVKFGLQDANPVSTPMDPNVKLDDEDSKDGEVSAEGEQDTRLTYGYATLIGSLMYLALGTRPDIAYAVHRLAQFTQNPKPKHWTAVKRIFRYLKGT 1245          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A2G8KQ18_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KQ18_STIJA)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-14
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   25 LSQTSFIKGLLAKFGLDYLPACKTPLDHTVD-LTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            ++Q+ +I+ +L K+G+    A  TP +  VD +   P  + EL+DA LYR +VG L +V   TRP+L +TV KL +   NP   H    + A RYLKGT
Sbjct:   57 INQSKYIEKMLLKYGMKDCKARSTPCEMNVDKVFENPEDQIELTDARLYREIVGSLIYVMTSTRPDLCYTVTKLAQHMSNPTMAHLTMAKHALRYLKGT 155          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A146HC19_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HC19_MYCCL)

HSP 1 Score: 77.8 bits (190), Expect = 1.680e-14
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   13 KCFHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            K   ++QT++I+ +LA+ G D   +  TP+D  V L   P  ++       Y+SMVG L + A  TRP++A+ V  L +  INP P H  AV+  +RYL+GT
Sbjct:  475 KTITITQTNYIRKILAQHGYDIANSAATPMDPNVILEKLPDGKSYPDIKQTYQSMVGALMYAAITTRPDIAYAVQTLSQYSINPGPVHLTAVKHVYRYLRGT 576          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A177U140_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U140_9BASI)

HSP 1 Score: 75.9 bits (185), Expect = 7.210e-14
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   25 LSQTSFIKGLLAKFGLDYLPACKTPL-DHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            +SQ+ ++  +L ++G+      KTP+ D   +L P  G  A + + + + ++VG L W+A  TRP++AF V KL R   NP P+H +A +R  RYL GT
Sbjct:  152 MSQSGYVSQILQRYGMADCKPAKTPMADAMKNLGPRVGSMATVKERHEFAALVGCLLWLAQGTRPDIAFQVGKLARFMANPSPEHTDAAKRVLRYLAGT 250          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A177T584_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T584_9BASI)

HSP 1 Score: 75.9 bits (185), Expect = 8.160e-14
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 IKRNKCFHL---SQTSFIKGLLAKFGLDYLPACKTPL-DHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            I R+KC  L   SQT +I  +L ++G+D      TP+ + +  L    G  A   +   Y ++VG L W+A  TRP++AF V KL R   NP  +H  A +R  RYL GT
Sbjct:  934 IHRSKCGRLATMSQTGYIDQILQRYGMDNCKPASTPMAEASKSLGAREGSIASAKERQFYAALVGCLLWLAQGTRPDIAFQVGKLARFMANPSDEHLAAAKRVLRYLAGT 1043          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A2G8LC06_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LC06_STIJA)

HSP 1 Score: 75.5 bits (184), Expect = 1.060e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   25 LSQTSFIKGLLAKFGLDYLPACKTPLDHTVD-LTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            ++Q+ +I+ +L K+G+    A  TP +  VD +   P  + EL+DA LYR +VG L +V   TRP+L +TV KL +   NP   H    + A RYLKGT
Sbjct:  139 INQSKYIEKMLLKYGMKDCKARSTPCEMNVDKVFENPEDQIELTDARLYREIVGSLIYVKTSTRPDLCYTVTKLAQHMSNPTMAHLTMAKHALRYLKGT 237          
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Match: A0A2N9HCU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCU5_FAGSY)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-13
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   19 FHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAELSDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGT 318
            ++LSQ  +   LL+K GL       TPL+  V L PT G    LSDA LYR +VG L ++   TRP+LA+ VH + +    P   H+ AV R  RY+KGT
Sbjct:  773 YYLSQAKYASDLLSKAGLTDSKTVFTPLELNVKLNPTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGT 869          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1110.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.900e-6796.19Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK2.370e-6595.10Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y3B6_HETAK1.600e-1666.67Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A8H4R3V9_9AGAR5.650e-1644.34Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A2G8KQ18_STIJA1.250e-1440.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146HC19_MYCCL1.680e-1438.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U140_9BASI7.210e-1437.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177T584_9BASI8.160e-1438.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A2G8LC06_STIJA1.060e-1340.40Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A2N9HCU5_FAGSY1.110e-1343.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1110contigH-akashiwo_Contig1110:155533..155850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36651.K9FAB9
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size318
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.22e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,20FR9@147545|Eurotiomycetes,3SBAR@5042|Eurotiales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size318
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.172858-CDS-H-akashiwo_Contig1110:155532..1558501681387085.172858-CDS-H-akashiwo_Contig1110:155532..155850Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1110 155533..155850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1110.6.1prot_H-akashiwo_Contig1110.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1110 155533..155850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1110.6.1

>prot_H-akashiwo_Contig1110.6.1 ID=prot_H-akashiwo_Contig1110.6.1|Name=mRNA_H-akashiwo_Contig1110.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
IKRNKCFHLSQTSFIKGLLAKFGLDYLPACKTPLDHTVDLTPTPGFRAEL
SDANLYRSMVGKLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAF
RYLKGT
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mRNA from alignment at H-akashiwo_Contig1110:155533..155850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1110.6.1 ID=mRNA_H-akashiwo_Contig1110.6.1|Name=mRNA_H-akashiwo_Contig1110.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig1110:155533..155850- (Heterosigma akashiwo CCMP452)
ATAAAGCGGAACAAGTGTTTTCATCTTTCTCAGACCTCATTCATCAAGGG CCTTTTGGCTAAATTCGGCCTCGACTATCTTCCAGCGTGTAAAACGCCTC TTGACCACACTGTGGATCTCACGCCTACTCCCGGGTTCAGAGCCGAGCTC TCTGACGCAAACCTGTATCGGTCCATGGTTGGGAAGCTGGCCTGGGTTGC GAACTGGACAAGACCGGAGCTTGCTTTTACAGTCCACAAGCTTCAGCGTA CTCAGATTAATCCAGAGCCCAAACATTTTGAAGCAGTCCAGCGTGCGTTT CGGTACCTGAAAGGCACT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1110:155533..155850-

>mRNA_H-akashiwo_Contig1110.6.1 ID=mRNA_H-akashiwo_Contig1110.6.1|Name=mRNA_H-akashiwo_Contig1110.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig1110:155533..155850- (Heterosigma akashiwo CCMP452)
ATAAAGCGGAACAAGTGTTTTCATCTTTCTCAGACCTCATTCATCAAGGG
CCTTTTGGCTAAATTCGGCCTCGACTATCTTCCAGCGTGTAAAACGCCTC
TTGACCACACTGTGGATCTCACGCCTACTCCCGGGTTCAGAGCCGAGCTC
TCTGACGCAAACCTGTATCGGTCCATGGTTGGGAAGCTGGCCTGGGTTGC
GAACTGGACAAGACCGGAGCTTGCTTTTACAGTCCACAAGCTTCAGCGTA
CTCAGATTAATCCAGAGCCCAAACATTTTGAAGCAGTCCAGCGTGCGTTT
CGGTACCTGAAAGGCACT
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