mRNA_H-akashiwo_Contig111.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.13.1
Unique NamemRNA_H-akashiwo_Contig111.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig111.13.1 vs. uniprot
Match: K8Z3Q9_NANGC (Nicotinamide n-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3Q9_NANGC)

HSP 1 Score: 58.5 bits (140), Expect = 9.300e-9
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 LLSSIHNFLRPGGLALISFAHHVPNCEQKDLHFFELA-------RAEPFFFSVEHI 147
            LL S+H+ L PGG ALISFAHHVP CE KD+ FF LA         +P +F V+ +
Sbjct:  228 LLQSLHSTLCPGGTALISFAHHVPGCEDKDMRFFMLAAQARQYGNEQPVWFEVQKL 283
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BLAST of mRNA_H-akashiwo_Contig111.13.1 vs. uniprot
Match: A0A6S8BUZ9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BUZ9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.170e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 LLSSIHNFLRPGGLALISFAHHVPNCEQKDLHFFELARAEPF 126
            LL SIH+ L+ GG+ALI+F+HH+P  E +DL FFE A+   F
Sbjct:   36 LLLSIHSTLKAGGIALITFSHHIPGLELQDLSFFEKAKKMGF 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
K8Z3Q9_NANGC9.300e-951.79Nicotinamide n-methyltransferase n=3 Tax=Monodopsi... [more]
A0A6S8BUZ9_9STRA1.170e-654.76Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:1087892..1090898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5722.XP_001302844.1
Preferred nameEFM7
PFAMsMethyltransf_16
Model size154
Max annot lvl2759|Eukaryota
KEGG koko:K17878
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000183,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006479,GO:0006480,GO:0006766,GO:0006767,GO:0006769,GO:0006807,GO:0006996,GO:0008112,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009820,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016740,GO:0016741,GO:0017144,GO:0018013,GO:0018022,GO:0018027,GO:0018193,GO:0018201,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031365,GO:0032259,GO:0034641,GO:0036211,GO:0040029,GO:0043170,GO:0043412,GO:0043414,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0071885,GO:0072524,GO:0080090,GO:0140096,GO:1901360,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue1.29e-05
EggNOG OGsCOG3897@1|root,KOG2920@2759|Eukaryota
EC2.1.1.1
Descriptionmethyltransferase activity
Cds size150
COG categoryJ
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.0177875-CDS-H-akashiwo_Contig111:1087891..10879331681387085.0177875-CDS-H-akashiwo_Contig111:1087891..1087933Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1087892..1087933 +
1681387085.0276542-CDS-H-akashiwo_Contig111:1090788..10908961681387085.0276542-CDS-H-akashiwo_Contig111:1090788..1090896Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1090789..1090896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.13.1prot_H-akashiwo_Contig111.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 1087892..1090896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.13.1

>prot_H-akashiwo_Contig111.13.1 ID=prot_H-akashiwo_Contig111.13.1|Name=mRNA_H-akashiwo_Contig111.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
LLSSIHNFLRPGGLALISFAHHVPNCEQKDLHFFELARAEPFFFSVEHIT
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mRNA from alignment at H-akashiwo_Contig111:1087892..1090898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.13.1 ID=mRNA_H-akashiwo_Contig111.13.1|Name=mRNA_H-akashiwo_Contig111.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3007bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1087892..1090898+ (Heterosigma akashiwo CCMP452)
CTTCTGTCATCAATACACAATTTTCTGAGGCCTGGAGGACTTGTAAGTAA
CCCCTCCTTTGCTATAGTCTGTGTTGTCATGAAACTGTCTTTCGCCACCA
ATTCTCACAACCAAGCCACAACTTGTTTCATCAGCGCTGCTGTGTTTTAT
TAGTTATCAATTGCAATTGCAGTCTCAGAGCAAACGGTGACCAACAAAGA
ATTTGAACTAATCCATTGTCAGTGTAGCTGAATATATATTATTGTACAAC
CGACGCCGTTTAGATATTGCTTTTTTTTTTTTAAATTTATTTCAAATCCA
AAGTAAAAAAGTCTTTATGTATACTGCGTTGATGTGATACTGGTTTGATT
CTCCTGCACTTTCCTACAATTTGAAGCTCTCCTTCTTCCCGGATCTACTG
CATTCCCTTCCTTATTATAAGAACTATAAATTATATATTGAGTTTGTGGC
ACCAGAATTGGAATCATGAAAATAATCAATGGCAGATTGAAATATTCAGT
TTTTATGAAGTTCTGTTGTTGGATTATAAAAAGTGTCCATGTATTTAGTT
CTTACATGAAGTTCTGTTGGATTATAAAAGTGTCCTTATATCAATCTTTG
ATTGATTAAGAAATACATTATTGACTACTCTCCTTTCTCAACAATCTCAT
TCGCCACAATAATATTTTTCCACCACTACAGAGAACTGCCACCATTTAAT
ATTTTCTTTCTTCATCTTCGATCATTGCAAGCGATGTCTTCTTCTTCTTC
TTTTGTAAAATCATGCACACAGCACCACTGTGTACTTCATTCATCGTAGT
TCTCACACTACTGCCCTGCTGGTAACTTGCTGCTCCGCCCATCTGCACTG
AGGCTCCTTCCACCTGCACACACGTTTTACCGGAAATCACCCCCCATGCA
CTCTGGAAAACATTCCCCCACCTGGTGATAATAGCTGAAGTGGTCTCCCA
CATCCTGGCTGGCCAACCCCCCCCCTGGCTGGCCATCCCCTCATGCTGGC
TGCCTGTCCATCCAAATTTGCTGTGCTCTATCAGCTGCTTCTACCACTGC
TCCAGTTGTTACGATCTCATGGGCATGGCTACCCACGAATCTGTTCTGCA
GTTGTCACATCCTCCTCCCCTTATCCTCCTGTCGCTGTTGAGCTCTGGGG
CTGGCTACCCATTAGTTCTTGTTGGCTCTGTCCAGACAATATTGCTGTGC
CCATTCCATGTGTCACTTTGCTTGAACCATGACCTTCATGTAGCACGAGG
CTTTTAGTAGATTGCTAGATCGTGCACCCGTTAGACTGTATGGTCGCCAG
CCTTGCTTGTGCCCTAATGCTGACGCCATGGGAATATTATATATATATAA
CTTCAGGGCCTTGTTCAATGAGCTGGTACCGGATCCGGCAAATCCGTTTG
AGGTGGTATAGGTGCATGGCAGAGATGGCGGGATCAACTGGGGATCTAGA
TTTCAGTATGGTAGTAGTAGTAGATAGAGTTGATGTTAGACAGAGGTACA
ATGACATTGGCATGGCTGGAGTGGTGTGTGATATTTGTTCCTGTGTTTGT
AGGGGGACTTGACTAGTGATATTCTGATATGGCAGTAAGAGGTGGAGGGG
TCTCCTGATAGAAGCTAGGGGTTCTGCCCCGAAAGTGATTTGAAAGGGTA
CACTGTAAACTAAACTTAACATCATCATCATCATCATATATATTCTACAT
CACCAAGAAGCCACTACATCGTTCCCTTCCTGATGTCCCTATAGCCCACA
GCACCCATGCTCCCTGCAGTTCCTCTTCCAGCCCCCCAGGACCCCCATGC
TCTTCAGCTCCTCCTCCCAGTCCCCTTCATACTTCTTCCACACCCTTTCA
AAAGCGTCCGACCCAAACGACCCTTCTTCCATTCCGTAGAGTTGCATCAC
CAATAGCCCAAACCATCTACGCCTTATACCAGGTACCACTGCAGCTATAG
CCCTTCACCGCCAGCCCCACCCAGTGCTGCATCTCGGCCTATATCTCATA
TATCCGGGGGCGAAGATGTTTTTTTGATGGGACAGGGCAACTGAGGTGGT
ACTGGACAGAGTGAACTTGGGTATAGCGGTGTCATGCTGACTGATTAATG
ATCATTTTATTATCGAGGTGAACTGTTGAAGCGTCGGAAGGGTCTGCTCG
TAATAAAAGCTGGGGGTGGGCTACAATCTGAGCTGGTTGTTTTCCCCTGA
AGCAATTTGAAAGAGGACTATGATGCATGGTGCCGTCATAAACTTCACAT
GAAGCGCGACCGGCCGTAGCGCCAGGCGCCCAACTCGGATCCGAAAATGA
AGCGTACATTTTTATATAGCCGTTTTTCGTAAAATTTTCACAAAAAATAT
ACATGCGAAGTGTAATTTTTTTCCCGCATCCGAGGTGCGGGCCACCCTTG
GGTGGGTCGGATACCAAAACCCGCCCGAAGAAAAATGAAAATTTACATTT
CTAGTTTTTTTTTTCTGAATCTAAACGCGAAGCGGCAATGAAAAGTATCC
TTTATTTTTGGATTCGAGTTGGACGCCTGGAGATAGCGCGCGGATGAAAT
ATGGCCCGTAACCGGTCCCGAAACGGCCCCGAAATCGAAATCTGAAAACC
GGCGGATGTCCGAAACCCGAAAATCGGGCTGTTGTAGCATCTTCAGGGAT
TTCAGAACTGCTTTTATTCGTAGTGAAGATAGTGCGCGCCAGCTCATGTG
AAGGTTATCATGCACCGCATCATACTGGACTGTAGACTAAATCTACCATC
ATTATCATTCATCCTGCTGACTCAATAATATATATATAGTAATATATGAT
GGTGGCCTTTTGTCATTGATTGAATAACTATTTAAAAAAAAAATCAACAA
ATCAACAACAATGATGTCCTTTTCTTCTTTTCCAATCACTAATACAGGCG
TTGATCTCATTTGCGCATCATGTTCCAAACTGCGAGCAAAAAGATCTCCA
CTTTTTTGAACTCGCCAGAGCTGAACCTTTCTTTTTTAGTGTTGAACATA
TCACAAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig111:1087892..1090898+

>mRNA_H-akashiwo_Contig111.13.1 ID=mRNA_H-akashiwo_Contig111.13.1|Name=mRNA_H-akashiwo_Contig111.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1087892..1090898+ (Heterosigma akashiwo CCMP452)
CTTCTGTCATCAATACACAATTTTCTGAGGCCTGGAGGACTTGCGTTGAT
CTCATTTGCGCATCATGTTCCAAACTGCGAGCAAAAAGATCTCCACTTTT
TTGAACTCGCCAGAGCTGAACCTTTCTTTTTTAGTGTTGAACATATCACA
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