mRNA_H-akashiwo_Contig1106.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1106.3.1
Unique NamemRNA_H-akashiwo_Contig1106.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1106.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1106contigH-akashiwo_Contig1106:175892..176505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.6835463-UTR-H-akashiwo_Contig1106:175891..1759161681387083.6835463-UTR-H-akashiwo_Contig1106:175891..175916Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1106 175892..175916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.693301-CDS-H-akashiwo_Contig1106:175916..1759481681387083.693301-CDS-H-akashiwo_Contig1106:175916..175948Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1106 175917..175948 +
1681387083.703486-CDS-H-akashiwo_Contig1106:176411..1765051681387083.703486-CDS-H-akashiwo_Contig1106:176411..176505Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1106 176412..176505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1106.3.1prot_H-akashiwo_Contig1106.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1106 175917..176505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1106.3.1

>prot_H-akashiwo_Contig1106.3.1 ID=prot_H-akashiwo_Contig1106.3.1|Name=mRNA_H-akashiwo_Contig1106.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=42bp
MKTPAKSSLKSAGRRGRRRWCAATRQSATPSCPPCTGRASAS
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mRNA from alignment at H-akashiwo_Contig1106:175892..176505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1106.3.1 ID=mRNA_H-akashiwo_Contig1106.3.1|Name=mRNA_H-akashiwo_Contig1106.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=614bp|location=Sequence derived from alignment at H-akashiwo_Contig1106:175892..176505+ (Heterosigma akashiwo CCMP452)
TCAATACCACACCATTTCTGAAAAAATGAAAACACCCGCCAAGTCTTCGT
TGAAAAGGTTTGAAGTACCCTTCCTACTTCCTAACCCCCAACCTGCATTG
GGCTTTATAATAAATTTATACTACTGCACTGTTGTTTGTGCTTTCTGCTG
CAACACTTTTGACGGCATACGTAGCATCCCAGCTTCAAAAGGAAGGGGGA
GGGAACACTTTCTAGCGCGGTGCGATGGCAAGCTCAATTATTTCAAGTAA
AAGGTAGTGTTGGCATGCTTCGACTGCTTCTGTTGTTAGACAAATATATA
TTTTAAGTCCAGTAGCTGCACAGCCATGATGCAACTACTTGGGAAAATAA
TAATAATAATGATGATAAAGGCACCAAAACATCCCCTCAATAATTTTGTT
ATTCTACAATACAACGAGTGAACGACAAAGGTCAAATGAACATGCTACTG
CTGCTTCTACTAACTGTGGTGTGATCGCTATAATAACACGAGTCGTGTAC
CGTGATGGCGACGGTCCCAGTGCGGGGCGGAGGGGGAGGAGGAGGTGGTG
CGCCGCGACCCGACAGTCGGCGACGCCCAGCTGCCCGCCCTGCACCGGGC
GCGCGTCGGCAAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1106:175892..176505+

>mRNA_H-akashiwo_Contig1106.3.1 ID=mRNA_H-akashiwo_Contig1106.3.1|Name=mRNA_H-akashiwo_Contig1106.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=126bp|location=Sequence derived from alignment at H-akashiwo_Contig1106:175892..176505+ (Heterosigma akashiwo CCMP452)
ATGAAAACACCCGCCAAGTCTTCGTTGAAAAGTGCGGGGCGGAGGGGGAG
GAGGAGGTGGTGCGCCGCGACCCGACAGTCGGCGACGCCCAGCTGCCCGC
CCTGCACCGGGCGCGCGTCGGCAAGC
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