mRNA_H-akashiwo_Contig1105.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1105.2.1
Unique NamemRNA_H-akashiwo_Contig1105.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 184 bits (467), Expect = 7.720e-58
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 96          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.620e-43
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            MNT+WVR+NAVVFFG TVLL LA +C+FST+LHKGEP+IKYLG+NTIRS+++  G DR LISFD+DADL+ AFNWNIKQLFVFVVAEYAT+ N
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTN 93          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.520e-37
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            MNTVWVR+NAVVFFGLTVLL LA++ A STYLH+G P +K L +N I+S +S   VDRA+I+FDL+ADL PAFNWNIKQ+FVFVVAE+AT+ N
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTN 93          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 6.460e-35
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+T WVRVNAVVFFGLTVLLVL+++ A STYLH+G P+++ LGV+  R+ +   G DR L++ D+DADL PAFNWN+KQLF FVVAEY T  N
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTN 93          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.210e-33
Identity = 60/93 (64.52%), Postives = 77/93 (82.80%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+TVWVR+NAVVFFGLTV++VLA++  FST  H+G P +  L +N+I +L++HG  D A++SFDL ADL+PAFNWNIKQLFVFVVAEY T+ N
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTN 93          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A7S2IIZ8_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2IIZ8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.820e-33
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLH--KGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+TVWVR+NAVVFFGLTVLL L+I  A S + H  + +P ++ L +N +RSLKSHGGVDRAL+SFDL  DLTPAF+WNIKQLFV+V+A Y T+KN
Sbjct:   24 MHTVWVRLNAVVFFGLTVLLGLSIAAAISKWGHASRHKPVVEKLKLNKLRSLKSHGGVDRALLSFDLHVDLTPAFHWNIKQLFVYVIATYETDKN 118          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.190e-32
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGE--PNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+TVWVR+NAVVFFGLTVLL L+I+ A S   H     P++K L + T+RSLKSHGGVDRAL+SFD+D DL PAF+WNIKQLFV+VVA Y ++ N
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTN 95          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A448Z0X0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0X0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.380e-32
Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFS----TYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYAT 270
            M+TVWVR+NAVVFFGLTVLL L+ + AFS    +Y+H  +P I  L +NT+RSLKSHGGVDRAL+SF++DAD+ PAF+WN+KQLFV+VVA Y T
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSCLAAFSKIGHSYIH--QPIINTLELNTLRSLKSHGGVDRALLSFNIDADMNPAFHWNVKQLFVYVVASYET 92          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.800e-32
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLH--KGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+TVWVR+NAVVFFGLTVLL L+++ A S   H  + +P +  L +N +RSLKSHGGVDRAL+SFDL AD+ PAF+WNIKQLFV+VVA Y T+ N
Sbjct:    5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTN 99          
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 118 bits (295), Expect = 9.610e-32
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLH--KGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN 279
            M+TVWVR+NAVVFFGLTVLL L+I+ A S   H  + +P I  L +N +RS+K+HGGVDRAL+SFDL AD+ PAF+WNIKQ+FV+VVA Y T+ N
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTN 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1105.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NT77_HETAK7.720e-58100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ74_9STRA2.620e-4376.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YJ42_9STRA4.520e-3769.89Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
D7FLF7_ECTSI6.460e-3563.44Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A7S2SN40_9STRA4.210e-3364.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2IIZ8_9STRA7.820e-3366.32Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
A0A7S4J3F9_9STRA1.190e-3265.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448Z0X0_9STRA3.380e-3265.96Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2XM83_9STRA5.800e-3264.21Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8CCG8_THAPS9.610e-3263.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1105contigH-akashiwo_Contig1105:169256..174074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLF7
Preferred nameSPCS3
PFAMsSPC22
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons4
Evalue1.06e-35
EggNOG OGsKOG3372@1|root,KOG3372@2759|Eukaryota
Descriptionsignal peptide processing
Cds size279
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.5544107-CDS-H-akashiwo_Contig1105:169255..1693321681387083.5544107-CDS-H-akashiwo_Contig1105:169255..169332Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1105 169256..169332 -
1681387083.566554-CDS-H-akashiwo_Contig1105:173474..1735271681387083.566554-CDS-H-akashiwo_Contig1105:173474..173527Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1105 173475..173527 -
1681387083.5809054-CDS-H-akashiwo_Contig1105:173770..1738331681387083.5809054-CDS-H-akashiwo_Contig1105:173770..173833Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1105 173771..173833 -
1681387083.5981028-CDS-H-akashiwo_Contig1105:173988..1740741681387083.5981028-CDS-H-akashiwo_Contig1105:173988..174074Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1105 173989..174074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1105.2.1prot_H-akashiwo_Contig1105.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1105 169256..174074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1105.2.1

>prot_H-akashiwo_Contig1105.2.1 ID=prot_H-akashiwo_Contig1105.2.1|Name=mRNA_H-akashiwo_Contig1105.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=93bp
MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSL
KSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKN
back to top

mRNA from alignment at H-akashiwo_Contig1105:169256..174074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1105.2.1 ID=mRNA_H-akashiwo_Contig1105.2.1|Name=mRNA_H-akashiwo_Contig1105.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4819bp|location=Sequence derived from alignment at H-akashiwo_Contig1105:169256..174074- (Heterosigma akashiwo CCMP452)
ATGAACACTGTTTGGGTCCGAGTAAATGCAGTTGTGTTCTTCGGGTTGAC GGTGCTGCTCGTTTTAGCAATTATATGCGCATTTAGGTATTTAAATCTCT TGAAGACTCAGCTTAGCATTGAATGTTCCGCTGTTTTGTGTTTTTATTTT TCCAACTTATATCTGGCAAGAAGGGATGTCCACTGTGTCCATTCTAAAAG CCAATGGTGTTCTTTACTTACATTACTTATGGTTGATAAAGCACTTATCT TCATAAAGGAGAGCCGAACATCAAGTACCTGGGGGTGAATACGATCAGAT CTTTGTAAGCCTCCGCCTGTTCATCAGATGTTGTAATTTTGTGTGTGCAT GTGTGTGTACATTTCTAGTTTATTTTGGCTTTTTTAATCCTTCCATTCCA AATATTTGGGTGTAGTGTTGAATCTTTGAGATAATAAATCATCAGTGTGA TTGGCTTTGGGCTGAAAGCCTTTTAATAAGTCAATTTAGCCTCCATGGGA ACTAGCATGAGCTGTATAAATCTAATCATGTTTTCCATTCTTCTCAGGAA GAGCCATGGGGGTGTTGACAGAGCACTCATCAGTTTCGACTTGGATGCAG GTAGAAACTGTTTTCTTCGAATTGTTGCTTCCAAATATTCTGCCTGTGTC GGTGTGTTTACTCTTTTTCAATGTACATGCAAATCATGGACAGGGGCGAA CTGGTACGTGATTTTTTAAATTATTATTTTCACTTATTTTTAGCAGGGTC CTTTACTTTGAAGGGGGAAACAACTTCCGGTCATCATTGACCATCACAAG AGACCCCTCTCTTATATAAAAAAGTAATTTTACAGATCGTGGTCTTATTG GAGTAGAAGATAACGATCCAAAACAAACTATGTTATTGGACGAATCAAAT ATTTCTTTTACATGTTTTGGCTGCCACCCAGCTTTGCCGCTTCCACACAC ACCCTTTTCATGATTGAAAAAGCTGATCAATTATTAACCTGTTCATTTTT TGTGCGTGTGACCTATCCTATTATTCACCCGTCACCCGTTCTATAGAGAT AAGATTCTGCAATGCTTTGGAACACACACTTTACTACTGTGTTGTTCTAC ATGACTGAATTATGGTCTCAACGGAAGGCACACATCCAGCCCTAGTTCAA GCACATCCACCATCACTGAAACAGGAGGTCAGAGGTTATTAGAAAATGCT TTCAAAAACAGCTATACTACAGTGTATATACCAGGCCATCCCTGCAAAAG TCTCAAGAGTTTCGGCCAATACAAGGCCACCAGCAGCCAAAGGTAGCGGC TTGACCCTCAGTTTTGCTGGATAGTATAGATCTGGTTGTGAGCTCGCAAC ATTTTTGTTCTCTCTGCTGCTGCCCCAGTCCAGCGGTTGTTGACTCAGCA GAAAAATTCAAAATGAAGAAGAAAAATGATCTGTTCATGACTGAATGATG AGACCATCATTCAAGTTTTTGAAGAGAAAGTTCAAAGTCGTTTTCACATA TATACCAAATCTGCGATGGTGCAGTGTATTCAAGATGTCAAAATTTTTTT ACAGCGCACCGTTTTTTTTGCTCATCCACCGAGTTTTTTTTTTTTTTTTT TTCCCCGCCCCCTCAAATTCACCGAGTTTTTTTTATTACTGATTTTTTTT TTCGGCGCTTCGCGCCTTAAAAATGAATATTGATGAAGATAAGATAAAGT TACACTCATACCACAATGCAGCACAAACAATGATAATGATTGCATGCACA TCATACACAAGTGGTTAAAACTGTTTTGAGGGATTAGGAAAAACTACCAA GTATGAACGACCTAATATCAAGTAACTACTACAAAAAGAAGTGTCAGCAC ACTACTACATCATCAGCAGACTACATCTCAACTGGCACTGGCTGAGGCAG AACAAGCACATTACTCTCCACAATCTCAAGCAACTTGTGAAGAACAATCT CCACCTCCTCCTGCACCCCTGCCACATCAGCCTCAAAGCACACTAGACTG TGCTCCAACCCAAAGTTTCCCATTCTCTTCTTTCTATGATGAATGAACCC CCCTCACCAACTCAGACAAATGAGTGCCTCCCAATGCAGAAACACCCAAA AAACTTAGTTCTGTGGTATGAAGTATTGATCGCCCTTTTCCCTCCAAAAG GTCATATGACGGTGTGTGGATCGTCTCGAAACTCCGCACGGTGAGCGCTT GTCGGGCGGAGAGGAGTGACTGTCTCGGGCACGTAGGTAGACTCGAACCC GGATCTGGAAAAAGAAAGCCTTTCGCTCTTGCGATTACACAATTCGAGCT CATTTTAATCGCGAGAATTTGTCTATATAACAGTACCAAGACTTTTTTTT CGAAAATTCATCGAGATTTTTTTTTTTTTTTTTTTTCGAGCGCCGGATTT TACCGAGAATTCTCGGTATATTCGAAAATTCATCGAGATTTTTTTTTTTT TTTTCGAGCGCCGGATTTTACCGAGAATTCTCGGTATATATCGAGAATTT TTATGCCTGTGGTGGGCGATGAAATTGCACGGAGAAGCAAAAGAAAGATG GCAGTTGGTACACGCAGTAACAAGCAGAGGGTAGCAGCGATCATGCAAAA AATGGTGGGAGCACAGCATGAACATCTGTTTTCTGCTTCTTCATTTTGAA TTTTTCTGCTGAGGCTTCAACAACCGCTGGACTGGGACAGCAGAGAGAAA AAGTTGTTGGGAGCTCACAACCAGATCTACTCTGGCAAAACTGAGGATCA AGCCGCCAGCTTTGGCTGGTGGTGGCCTGGTATTGGCCGAAACTCTTGAG TCTTTTGCAGTGATGGCCCTATTACACTGTAGTATAGCTATTTTTTTAAA GCATTTTCTAATAATCTCTAACCTCCTGTTTAAGGGATGGTGGTGGATGT GCTTGAACTATAGGTCTGGATGTGTGCCTTCCGTTGAGACCTTAACCCTT TCCGGACCAGACTTGGACAGATCTCTCCAAGCGTACGAAGAGCAGATGTA CCCTTGGGCTGTTCAGAATTGTGATTCCTGAACAGCACCTCATTGGCCAA GTTCCTCCGCACTCGGATAAAAGAGCCACCGCACTCGAAAAAAAGAGCCA AAAGAGCAGACCCAAACAAGAAGACCATAGAATCATTTGGCGTGGTTGAA GTTGTTGATGATGACACGATGACGATTGAAAAAAAACTGTTCTGTATTTT GATTAAAAGTATCCACCCAAAGTTCCAGCAAAAATTGTGGAATTTCTCTA AAAGTACGGGAATTCCAGTAATTTGGGAAAGACCAAATTCCTGGTGACAT ACCCGTTAAAATGATTAAATTCCCGCAAAAAAAAACTGCCAATTCTTATT TCCTTTCTCTTTTACAAAGAAAAAGAAGAAGTGTAAAGAGAGGCTAAAAA TCAAAACTCCCGTATCAACTGCAAACACTTTTAATTAGAACTTTGGACAT TTCTAATTTGGATCCAGACGAATGTTTCCAACAGAAGGAGAAGACCAGGA AACATGATGAAGCTTGCGATGTGGCGGTCCAATCTGAAATTCATGTAAAA GAGCCACCGCACTCGGATTAAAGAGCCAAAAAAAGAGCATACCCAAACAG GAAGACCTGGGAATCATTTGGCTTGGTTGAAGTTGTTGATGATGACATGT AAGAGAACATTGTTCTGTATTTCGATCCGGACGAATATTTAGCGGACAAG AAGACCAGGAAACATGATGGAACTCGCGTACCTGACTAGGTCCAATAGGT AGTTACGCTGACGTGGTCTTGGTGACTTGGTGATGATCGGGAAAAAATAA GTATTTTCTCTTTTTTTCCTTCCCAAGACAAATCTGATGATATGTAATGA TTTGATGTTGTTGGGATGGCAGTTATTTTACAGTTGACACTTTTAAAATT CTCTGGGGGCTGCGCGGAATGTCCTCGCGTTAGCTGTAGATGATTGATGA TCCACGCAAGTGGCGGTTGTTGAAACATGAGCACTACCTACTGTTCATGA GGCCGGTTTGTGGAAGTTACATTCCATAAGCTTGAAAAACGGGCTAGGAA GCAGACTCGTGCTGCGAAAACAGGGGTGGATTGCGCCAGTCTTGGTGGAT ACCATCCCGACCCGCTGGAAGGAGAAGATGCACTCGCGATGGATGTGAGT TGTCGAAGAAGCGCCTACGGTAGAGACAACTGAAAGAGGGCGATGAGGCC AAAGGACAATAGAGCATGTAGGGTTAAGGATAGCTGAACTTCCAAAGTTG GTCAGTAATCAGACTTGATCCGAAGAAATGCATCAGATGTCAAAGGCAGC CTGCAAATAGACGGTGGTTGTGTGGTTCAGGATGTGAAGGAACGCATTGC AAGTAGAACGTATACAAAAAAAAAAATGGTAGAAAATGACATGATCTTTC CATTTCTTTTCTGAGTGGACAATGAAATTAGCCAAATATGCAAGTAGCCA GCCAGCAGTGTAGAGCACATCCAAACAAACTCATAGAGCTTTTTAGAGCT CAAAAAGACCAAAAACTCCTTGAGATATGGGGTGCTGAAGAAGTTTAGGC CTCTGCCATTTTTTTTTTCCAATGGCTGGTCTGGAAAGGGTTAATTCAGG CATGTAGAACAACACAGTATACTCGATGATGGTCTCATCAGAGACAACCT CAAAATCAAATACACACTTTACTACTCGCTACTTTCTGTAATATGTGCAT TTATTCTACTATGATGATAAACACTTGTCAATTCTATTCCAGATCTTACC CCAGCTTTCAACTGGAACATCAAACAGCTATTTGTATTTGTTGTAGCTGA ATATGCAACTGAAAAAAAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1105:169256..174074-

>mRNA_H-akashiwo_Contig1105.2.1 ID=mRNA_H-akashiwo_Contig1105.2.1|Name=mRNA_H-akashiwo_Contig1105.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=279bp|location=Sequence derived from alignment at H-akashiwo_Contig1105:169256..174074- (Heterosigma akashiwo CCMP452)
ATGAACACTGTTTGGGTCCGAGTAAATGCAGTTGTGTTCTTCGGGTTGAC
GGTGCTGCTCGTTTTAGCAATTATATGCGCATTTAGCACTTATCTTCATA
AAGGAGAGCCGAACATCAAGTACCTGGGGGTGAATACGATCAGATCTTTG
AAGAGCCATGGGGGTGTTGACAGAGCACTCATCAGTTTCGACTTGGATGC
AGATCTTACCCCAGCTTTCAACTGGAACATCAAACAGCTATTTGTATTTG
TTGTAGCTGAATATGCAACTGAAAAAAAT
back to top