mRNA_H-akashiwo_Contig1104.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1104.2.1
Unique NamemRNA_H-akashiwo_Contig1104.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7S3Y9R4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9R4_HETAK)

HSP 1 Score: 152 bits (383), Expect = 3.350e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLHR 219
            GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLHR
Sbjct:   63 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLHR 135          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A8J5X9N8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X9N8_DIALT)

HSP 1 Score: 92.8 bits (229), Expect = 9.290e-21
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            G  PAI+TVP+FW +YFP Y+++K  +  +   D  S+ VH+ +AVSAGFA +V+TNP+WVVRTRLQTQ LH
Sbjct:   85 GFAPAILTVPVFWSLYFPLYDRMKPAVAHVLRTDTRSSGVHMFSAVSAGFAINVLTNPLWVVRTRLQTQALH 156          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A835Z5U5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.270e-18
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            GI PA++ VP+FWGIYF  YE+ KR  V +       A  H+++A+SAG  ADV TNP WVVRTR+QTQ +H
Sbjct:   83 GITPALVIVPIFWGIYFGVYERAKRGFVSV-----TGAEQHVLSAISAGLVADVCTNPFWVVRTRMQTQAMH 149          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7S2Y0G8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.460e-18
Identity = 45/99 (45.45%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGI--------------------------GDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLHR 219
            G+ PA++TVPLFW IYFP YE++K RL   G                            D+  A  H ++AV AG  ADVVTNP WV+RTRLQTQ LHR
Sbjct:   50 GLAPALLTVPLFWAIYFPSYERLKHRLEAAGHKHWQPQSTAQGVAQPLNKGSQPEQDEADEVLALAHCLSAVGAGCVADVVTNPFWVLRTRLQTQVLHR 148          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: F2TZA2_SALR5 (NAD+ transporter n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZA2_SALR5)

HSP 1 Score: 81.6 bits (200), Expect = 8.790e-17
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            G+ P+++T+PLFW IYFP Y  + +RL  M  GD ++   H VAA++AGFAAD  TNP+WVVRTR+ +   H
Sbjct:   70 GLRPSLMTMPLFWAIYFPVYGAMNQRLALMSNGD-SATWQHCVAAITAGFAADCATNPLWVVRTRMISDIYH 140          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7S1XSX1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSX1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-16
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLV-AAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            G+ PA++TVP+FWG+YFP YE +K  L     G +   +  ++ AA+ AG   D+ TNP+WVVRTR+QTQ LH
Sbjct:  135 GLTPALVTVPIFWGLYFPTYEGLKATLEARNPGRERLQTHEIILAAMGAGIIVDITTNPLWVVRTRMQTQHLH 207          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7S3STG0_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3STG0_9SPIT)

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-16
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFL 213
            G+ P I +V +FW  YFPCYE  K  + +       S  VHL AA SAG   DVVTNP+WVVRTRL TQ L
Sbjct:   31 GLTPTICSVAIFWSCYFPCYEYAKTHIAEASGSTPESPRVHLAAAGSAGLITDVVTNPLWVVRTRLTTQAL 101          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7S3VXV9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VXV9_EMIHU)

HSP 1 Score: 77.8 bits (190), Expect = 6.740e-16
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFL 213
            G+ P++ +V +FW  YFPCYE  K  + +       S  VHL AA  AG   DV+TNP WVVRTRL TQ L
Sbjct:  101 GLTPSLCSVGIFWACYFPCYEHAKSAIARGSGASGESPGVHLTAAGLAGLVTDVITNPFWVVRTRLTTQHL 171          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: B8BS39_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS39_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 1.550e-15
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGI-----GDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            G+   + TVP FWG+YFP YE  KR++++        G  + A VHL +A++AG  ADVV NPM+VVRTR+QT+ LH
Sbjct:   59 GLGATLATVPAFWGLYFPMYESFKRKILEWSSDYGDGGHNHHALVHLGSAITAGGLADVVCNPMFVVRTRMQTEALH 135          
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Match: A0A7R9UD11_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD11_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGFAADVVTNPMWVVRTRLQTQFLH 216
            G+ PA+ TVP+FWG+YFP YE +K  L + G   + + +  + AA+ AG   DV TNP+WVVRTR+QTQ LH
Sbjct:  139 GLGPALFTVPIFWGLYFPTYEALKSLLRRDG--QQLTTAEIVSAAIGAGAIVDVATNPLWVVRTRMQTQHLH 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1104.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y9R4_HETAK3.350e-45100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5X9N8_DIALT9.290e-2156.94Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A835Z5U5_9STRA2.270e-1854.17Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2Y0G8_9STRA3.460e-1845.45Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F2TZA2_SALR58.790e-1751.39NAD+ transporter n=1 Tax=Salpingoeca rosetta (stra... [more]
A0A7S1XSX1_9STRA1.400e-1649.32Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S3STG0_9SPIT1.500e-1653.52Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S3VXV9_EMIHU6.740e-1649.30Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
B8BS39_THAPS1.550e-1549.35Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9UD11_9STRA1.860e-1551.39Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1104contigH-akashiwo_Contig1104:103009..103498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog946362.XP_004997882.1
PFAMsMito_carr
Model size224
Max annot lvl33154|Opisthokonta
KEGG koko:K15115
KEGG TC2.A.29.10.1,2.A.29.10.2,2.A.29.10.3,2.A.29.10.5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005477,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006848,GO:0006850,GO:0006862,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015215,GO:0015291,GO:0015318,GO:0015355,GO:0015605,GO:0015711,GO:0015718,GO:0015748,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035352,GO:0043132,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050833,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051724,GO:0055085,GO:0071702,GO:0071705,GO:0098656,GO:1901475,GO:1901679,GO:1903825,GO:1905039,GO:1990542,GO:1990549
Exons3
Evalue1.44e-17
EggNOG OGsKOG0764@1|root,KOG0764@2759|Eukaryota,38GH3@33154|Opisthokonta
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
Cds size222
COG categoryC
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.4870028-CDS-H-akashiwo_Contig1104:103008..1030851681387083.4870028-CDS-H-akashiwo_Contig1104:103008..103085Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1104 103009..103085 +
1681387083.498619-CDS-H-akashiwo_Contig1104:103221..1032541681387083.498619-CDS-H-akashiwo_Contig1104:103221..103254Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1104 103222..103254 +
1681387083.5212579-CDS-H-akashiwo_Contig1104:103386..1034981681387083.5212579-CDS-H-akashiwo_Contig1104:103386..103498Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1104 103387..103498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1104.2.1prot_H-akashiwo_Contig1104.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1104 103009..103498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1104.2.1

>prot_H-akashiwo_Contig1104.2.1 ID=prot_H-akashiwo_Contig1104.2.1|Name=mRNA_H-akashiwo_Contig1104.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
GIIPAIITVPLFWGIYFPCYEKVKRRLVKMGIGDKNSASVHLVAAVSAGF
AADVVTNPMWVVRTRLQTQFLHR*
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mRNA from alignment at H-akashiwo_Contig1104:103009..103498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1104.2.1 ID=mRNA_H-akashiwo_Contig1104.2.1|Name=mRNA_H-akashiwo_Contig1104.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=490bp|location=Sequence derived from alignment at H-akashiwo_Contig1104:103009..103498+ (Heterosigma akashiwo CCMP452)
GGAATAATACCTGCAATCATCACAGTTCCATTGTTTTGGGGCATATACTT CCCTTGCTATGAAAAGGTGAAGAGGAGGTAAGTTTCACACACTCCCATTT ATTCTTATTCTTTCGTTATGATGAGTTTGTCTTGTCGTCCATATTTCTTT GTCCTTCTTTTTGACCTTTGAATGAGTGAATTTTGTTGCTGGCATCATCT AACTGTAAAATAGATTGGTAAAAATGGGCATTGGGGATAAGAACAGGTGA GTTCAAGGAATTTTTTGTGGCATGGCTTCAAGAAATATGCACAGGGATTT TGTTCAACTGATTGATGCCGTACAGAGGCTACTGAGAAGTTTGGTATTTT TTATTTTCGTTATATGCTTGTTTTTCAGTGCTTCGGTGCATCTGGTGGCT GCAGTTTCAGCAGGATTTGCAGCTGATGTGGTGACAAATCCAATGTGGGT TGTTAGGACAAGATTACAAACTCAATTTCTCCACAGGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1104:103009..103498+

>mRNA_H-akashiwo_Contig1104.2.1 ID=mRNA_H-akashiwo_Contig1104.2.1|Name=mRNA_H-akashiwo_Contig1104.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig1104:103009..103498+ (Heterosigma akashiwo CCMP452)
GGAATAATACCTGCAATCATCACAGTTCCATTGTTTTGGGGCATATACTT
CCCTTGCTATGAAAAGGTGAAGAGGAGATTGGTAAAAATGGGCATTGGGG
ATAAGAACAGTGCTTCGGTGCATCTGGTGGCTGCAGTTTCAGCAGGATTT
GCAGCTGATGTGGTGACAAATCCAATGTGGGTTGTTAGGACAAGATTACA
AACTCAATTTCTCCACAGGTAA
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