mRNA_H-akashiwo_Contig1102.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1102.5.1
Unique NamemRNA_H-akashiwo_Contig1102.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A7S3XY53_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY53_HETAK)

HSP 1 Score: 150 bits (380), Expect = 3.930e-39
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 1
Query:  139 MVQFAPLVDILKQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDVNFMIGHSFGTSLVLSLASVGSKKHIHGMVLIGSTHIPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFL 816
            M QF  L+     ++SIVAYD  GCG SPKP    AY       DL A++ ++AT++N  +GHSFG+SLV+ LA+  + K++ G++L+GS  +  P     +F+LPL +L CL+        R   H         R+      NPM++ ++FY Q  W K +A+  +  PAL++HG  DR++ +  A AL   L  +++ ++  A H VMEE+  EVAAL+  F+
Sbjct:    1 MQQFEGLIKYFATKYSIVAYDGVGCGSSPKPRDARAYCPNALSADLLAIFNRYATEINVGVGHSFGSSLVMRLATQFTAKNMEGIILLGSA-LSVPAGGSPIFKLPLCVLECLKPILSRQFKRMAFHSSTSDEIKSRSAV---DNPMYVAKSFYSQLVWVKKEAIVNLIIPALILHGESDRIITVQNAVALNSTLSNSDIHIIKNASHQVMEEKTGEVAALIEKFI 222          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A1Q9F7F6_SYMMI (Abhydrolase domain-containing protein 8 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F7F6_SYMMI)

HSP 1 Score: 159 bits (401), Expect = 1.400e-38
Identity = 105/280 (37.50%), Postives = 153/280 (54.64%), Query Frame = 1
Query:   10 GTQKMEGASVINIRSGRDLNVYIRQHENPQAPTVFFVHGACASMVQFAPLVDIL--KQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFA---TDVNFMIGHSFGTSLVL----SLASVGSKKHIHGMVLIGSTH-IPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKP-DAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFL 816
            G   +E + ++ +R GR LN Y++    P  PT+  VHG+ A+  Q+ PLV+ L  K  + IV +D YGCGGS KP+SW AY+ +E   DL  +++  A   T  +F+ GHSFGT LV+    SLA   +   I G+VL+G     P   P+   FRLP+FLL+  Q       ++  +          +    CNANPM+M +A+YRQ + A   +    V  PAL++ G +D ++    A+AL   LP ++   V GAGH  M E P+EVA LV  F+
Sbjct:  171 GRALLEKSKLLEVRPGRRLN-YLQLDPKPGQPTLLLVHGSAAAFSQYLPLVEPLVEKMGYGIVTFDWYGCGGSDKPDSWSAYSFDELLADLKEVWKMAAACGTGPHFVAGHSFGTHLVIRLVASLARESATNPIAGLVLLGGARQFPEGHPI---FRLPVFLLSQFQHGMTDAFLKMALADSCDPEMRKQEEDACNANPMYMCKAYYRQVRNATDAELSACVDMPALVIRGEQDGIISSEDAKALVATLPKSKGVEVQGAGHAPMLEAPSEVAELVVEFV 446          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A812K0N5_SYMMI (ABHD8 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812K0N5_SYMMI)

HSP 1 Score: 147 bits (371), Expect = 5.680e-38
Identity = 98/254 (38.58%), Postives = 140/254 (55.12%), Query Frame = 1
Query:  103 PTVFFVHGACASMVQFAPLVDIL--KQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFA---TDVNFMIGHSFGTSLVL----SLASVGSKKHIHGMVLIGSTH-IPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKP-DAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVLE 831
            PT+  VHG+ A+  Q+ PLV+ L  K  + IV +D YGCGGS KP+SW AY+ +E   DL  +++  A   T  +F+ GHSFGT LV+    SLA   +   I G+VL+G     P   P+   FRLP+FLL+  Q       ++  +          +    CNANPM+M +A+YRQ + A   +    V  PAL++ G +D ++    A+AL   LP ++   V GAGH  M E P+EVA LV  F+  V+E
Sbjct:    1 PTLLLVHGSAAAFSQYLPLVEPLVEKMGYGIVTFDWYGCGGSDKPDSWSAYSFDELLADLKEVWKMAAACGTGPHFVAGHSFGTHLVIRLVASLARESATNPIAGLVLLGGARQFPEGHPI---FRLPVFLLSQFQHGMTDAFLKMALADSCDPEMRKQEEDACNANPMYMCKAYYRQVRNATDAELSACVDMPALVIRGEQDGIISSEDAKALVATLPKSKGVEVQGAGHAPMLEAPSEVAELVVEFVKTVME 251          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A812J916_9DINO (ABHD8 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J916_9DINO)

HSP 1 Score: 147 bits (371), Expect = 1.440e-34
Identity = 99/254 (38.98%), Postives = 140/254 (55.12%), Query Frame = 1
Query:  103 PTVFFVHGACASMVQFAPLVDIL--KQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFA---TDVNFMIGHSFGTSLVL----SLASVGSKKHIHGMVLIGSTH-IPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRF-VPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVLE 831
            PT+  VHG+ A+  Q+ PLV+ L  K  + IV +D YGCGGS KP+SW AY+ +E   DL  +++  A   T  +F+ GHSFGT LV+    SLA     K I G+VL+G     P   P+   FRLP+FLL+  Q       ++  +          +    CNANPM+M +A+YRQ + A    +   V  PAL++ G +D ++    A+AL   LP ++   V GAGH  M E P+EVA LV  F+  V+E
Sbjct: 3382 PTLLLVHGSAAAFSQYLPLVEPLVEKMGYGIVTFDWYGCGGSDKPDSWSAYSFDELLADLKEVWKLAAACGTGPHFVAGHSFGTHLVIRLVASLALETETKPISGLVLLGGARQFPEGHPI---FRLPVFLLSQFQHGMTDAFLKMALADSCDPELRKQEEDACNANPMYMCKAYYRQVRNATDVELNACVDMPALVIRGEQDGIISAEDAKALVATLPKSKGVEVQGAGHAPMLEAPSEVAELVVEFVKTVME 3632          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A7S0U0X2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U0X2_HEMAN)

HSP 1 Score: 139 bits (349), Expect = 1.590e-34
Identity = 87/261 (33.33%), Postives = 139/261 (53.26%), Query Frame = 1
Query:  109 VFFVHGACASMVQFA-PLVDILKQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDVNFMIGHSFGTSLVLSL-ASVGSKKHIHGMVLIGSTHIPGPVPVPLV--FRLPLFLLNCLQAAEPPG*MRQRVHRRA-------PGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRFVPNPALLVHGAEDRVLPLAGARAL------ERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVLEERR 840
            +FF+HG+   M QF   ++  + + +++VA+D YGCG SPKP  W AY+ EE  +DL A+Y  +    NF++GHS+G S+ + L A++G    I G++L+G  + P   P   V  FR P+ LL  +      G +++ +H+           R   R  A   +N MH+ ++FY Q +W  P+ ++ V    +LV G  D++LP   A  L      +R     EL V+  + H VM+E P+EV  L+  F+   L+ RR
Sbjct:   14 MFFIHGSMGHMQQFEHQILYCVSKGWTVVAFDAYGCGESPKPYDWDAYSHEEQFEDLKAMYNMYKGRRNFLVGHSYGASMAMQLCAAMGGDGCIPGLILVGPGYGPSHYPSKSVKIFRNPVILLQLIAPLLRRGFVQRALHQHTLEQKTVEHQRLVERIAAKQGSNAMHICKSFYMQMEWVIPETIQKVDADVVLVVGEGDKMLPPHNAACLADLLRTQRPQRETELFVLSNSSHQVMQELPSEVNKLLDTFVVRTLKTRR 274          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A812ZTJ0_9DINO (ABHD8 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZTJ0_9DINO)

HSP 1 Score: 123 bits (309), Expect = 2.600e-29
Identity = 85/226 (37.61%), Postives = 121/226 (53.54%), Query Frame = 1
Query:  181 FSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFA---TDVNFMIGHSFGTSLVL----SLASVGSKKHIHGMVLIGSTH-IPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAK-WAKPDAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVLE 831
            + IV +D YGCGGS KP+SW AY+ +E   DL  +++  A   T  +F+ GHSFGT LV+    SLA     K I G+VL+G     P   P+   F LP+FLL+ LQ       ++  +          +    CNANPM+M +A+YRQ +     +    V  P L++ G +D ++    ++AL  ALP +    V GAGH  M E P+EVA LV  F+  V+E
Sbjct:    3 YGIVTFDWYGCGGSDKPDSWSAYSFDELLADLIEVWKLAAACGTGPHFVAGHSFGTHLVIRLLASLARETEMKPISGLVLLGGARTFPEGHPI---FLLPVFLLSRLQHGMTEAFLKMALADSCDPDLRKQEEDACNANPMYMCKAYYRQVRNVTDAELSTCVDMPTLVIRGEKDGIISAEDSKALVAALPKSRGVEVEGAGHAPMLEAPSEVAELVVEFVQMVME 225          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A1Z5JJA6_FISSO (Abhydrolase domain-containing protein 8 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJA6_FISSO)

HSP 1 Score: 125 bits (314), Expect = 4.060e-29
Identity = 96/295 (32.54%), Postives = 145/295 (49.15%), Query Frame = 1
Query:   31 ASVINIRSGRDLNVYIRQHENPQAPT-----VFFVHGACASMVQFAPLVDILKQR---------FSIVAYDLYGCGGSPKPESWH--AYATEEHRQDLFALYQKF--ATDVNFMIGHSFGTSLVLSLASVGSKKHIHGMVLIGST----HIPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALAL--CNANPMHMVRAFYRQAKWAKPDAVRFVPN-PALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVLEERR 840
            A +  IR GR  +V++RQ     A       + F HG  A+  QF  +++ILKQR            + YD  GCG SP P      A+  EE  +D  A+ +K+  +T    +IGHS+G ++V +        ++ G+VLIG++    H+P       + +LPLF+L  LQ       +   VH   P     R       N N M + R ++R  +WA  D V+ + N PAL++HG +DRVLPL   + L   LP + L VV  A H+VM E+P +V   +  FL    +++R
Sbjct:   25 ACIQEIRPGR--SVFVRQEYQGNAQDNVELQLVFQHGTMATEQQFGLVLNILKQRCDEFLSLKCVKFILYDCVGCGQSPLPTDTRPSAFQNEELAKDFTAILEKYTDSTVPIIVIGHSYGPTIVFNTLRTNPLSNLRGLVLIGTSIRNPHLPHSDGGHPIMKLPLFILRFLQKTMTDEFVNMSVH---PDHTELREEVRKGSNRNDMSLARNYHRNMQWATVDDVQSIRNVPALIIHGKDDRVLPLECGQHLADQLPMSTLVVVDPASHLVMLEQPEQVGEEILQFLKRCFQKQR 314          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: UPI001BCD2E42 (alpha/beta hydrolase n=1 Tax=Pseudomonas sp. Pc102 TaxID=2678261 RepID=UPI001BCD2E42)

HSP 1 Score: 121 bits (303), Expect = 7.080e-28
Identity = 83/277 (29.96%), Postives = 134/277 (48.38%), Query Frame = 1
Query:   13 TQKMEGASVINIRSGRDLNVYIRQHENPQAPTVFFVHGACASMVQFAPL-VDILKQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDVNFMIGHSFGTSLVLS----LASVGSKKHIHGMVLIGSTHIPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLAGVL 828
            T K+     + +R GR LN+  R+  +  AP++FF HG   +  Q+  +  D    R+++VA+DL G G S  P    AYA EE   D  A++++FA++ N ++ HSFGT+L LS    L        +HG++L+G T +  P     + +LP ++L  ++     G      H             L   N +H+ +A   Q +W   + +  +  P  ++ G  DR+ P  G RAL   LP +   ++ GA H +M ERP  V   + A L  V+
Sbjct:    5 TTKVVQGEPVEVRPGRFLNL-ARRVVDKGAPSLFFAHGGGGNKDQWRLIWQDPRLARYNLVAWDLLGHGASETPRQASAYAWEELVADQLAIFERFASEQNVVLAHSFGTALTLSALVRLQERQQLNRVHGVLLLG-TQLQSPRGSSPLLKLPAWVLELIRPLLSKGFRDAAWHPDTDPELIAYEEKLTERNRLHVFKALLSQTRWIPEEQLAQLSVPIRILSGEHDRLTPPEGGRALHHRLPGSGFAIIEGAAHQLMLERPEPVTEHLLALLREVI 279          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: A0A2D5PYW8_9BACT (Hydrolase_4 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D5PYW8_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.210e-26
Identity = 77/257 (29.96%), Postives = 129/257 (50.19%), Query Frame = 1
Query:   46 IRSGRDLNVYIRQHENPQAPTVFFVHGACASMVQFAPLVDILKQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDVNFMIGHSFGTSLVLSLASVGSKKHIHGMVLIGSTHIPGPVPVPLVFRLPLFLLNCLQAAEPPG*MRQRVHRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFL 816
            IR G +L +Y   H       +FF+HGA     Q+   ++ LK +++IVA+DL G G SPKP++   Y   E   D+  +Y K+  + N +I HS+G +  L LA     K I  ++LIG+   P  +    ++ LP+F+L   +        +   H  +      R     + NPM +++A  +  K      V  +  P L+++GA D + P+AG + L   +P A+LK++  A H+VM E+P  V  ++  F+
Sbjct:   41 IRPGYELEIY--HHGTDSDTFIFFIHGAGGRADQWHHQINALKDKYTIVAFDLLGHGKSPKPKA--GYTFSELMGDVEKIYTKYKRENNIVIAHSYGVAFALQLALKNEHK-IQKLILIGANK-PRSITRVGLWNLPVFMLEWFRLVFSNSFAKNAFHPDSDPDFINRERVTSDQNPMGVMKALIKGMKEIPSMNVNDITLPVLIINGATDGLTPVAGTKRLAAEIPNAKLKIIEKASHLVMMEQPEIVNKIIANFI 291          
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Match: B7FZH4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZH4_PHATC)

HSP 1 Score: 102 bits (254), Expect = 6.820e-21
Identity = 81/281 (28.83%), Postives = 132/281 (46.98%), Query Frame = 1
Query:   31 ASVINIRSGRDL---NVYIRQHENPQAPTVFFVHGACASMVQFAPLVDILKQRFSI-------VAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDV-NFMIGHSFGTSLVLS-LASVGSKKHIHGMVLIGSTHIPGPVPV-----PLVFRLPLFLLNCLQAAEPPG*MRQRV-HRRAPGRPCWRALALCNANPMHMVRAFYRQAKWAKPDAVRFVPNPALLVHGAEDRVLPLAGARALERALPAAELKVVPGAGHMVMEERPAEVAALVGAFLA 819
            A +  +R GR L    V + Q  +     +  VHG C +   F P +  L    +        ++YD  GCG SP   S+ AY   E   DL A+ Q+  + V   ++ HS+G S+V   L  + S+  + G+V + +      +       P + +LP F+L C+Q +     ++  V       +   R  +  NAN M + + ++R   WA  D V+ +P   L++HGAED +LP+   + L   L   EL  +  A HM+M E+P ++A  V AFL+
Sbjct:    6 ARLETVRPGRTLFVRQVSMGQENSATRLQLVCVHGLCGTERHFLPFLHALDHAVASNDIWLQSISYDWMGCGKSPLIPSFDAYHNRETEADLLAVLQRLDSSVPTVLLAHSYGPSIVAQVLPQITSQLRLVGIVWVSTALKSDTITFLADGGPPLMKLPTFVLRCMQPSLTNSFVQAAVLDSHTDVQTVVRNDS--NANDMWVAKCYHRHTCWAHVDLVQNLPIDHLVLHGAEDGLLPITAGQDLANRL-GTELIAIDQASHMLMLEQPTKMATAVAAFLS 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1102.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XY53_HETAK3.930e-3936.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Q9F7F6_SYMMI1.400e-3837.50Abhydrolase domain-containing protein 8 n=4 Tax=Sy... [more]
A0A812K0N5_SYMMI5.680e-3838.58ABHD8 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A812J916_9DINO1.440e-3438.98ABHD8 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A7S0U0X2_HEMAN1.590e-3433.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A812ZTJ0_9DINO2.600e-2937.61ABHD8 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A1Z5JJA6_FISSO4.060e-2932.54Abhydrolase domain-containing protein 8 n=1 Tax=Fi... [more]
UPI001BCD2E427.080e-2829.96alpha/beta hydrolase n=1 Tax=Pseudomonas sp. Pc102... [more]
A0A2D5PYW8_9BACT1.210e-2629.96Hydrolase_4 domain-containing protein n=1 Tax=Cand... [more]
B7FZH4_PHATC6.820e-2128.83Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1102contigH-akashiwo_Contig1102:155320..156587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD07488
Preferred nameABHD8
PFAMsAbhydrolase_1
Model size1268
Max annot lvl2759|Eukaryota
KEGG koko:K13701,ko:K19367
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.31e-22
EggNOG OGsCOG0596@1|root,KOG2382@2759|Eukaryota
Descriptionhydrolase activity, acting on ester bonds
Cds size480
COG categoryC
BRITEko00000,ko00001,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.9188197-UTR-H-akashiwo_Contig1102:155319..1553401681387082.9188197-UTR-H-akashiwo_Contig1102:155319..155340Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1102 155320..155340 +
1681387082.936516-UTR-H-akashiwo_Contig1102:155820..1565871681387082.936516-UTR-H-akashiwo_Contig1102:155820..156587Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1102 155821..156587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.9281564-CDS-H-akashiwo_Contig1102:155340..1558201681387082.9281564-CDS-H-akashiwo_Contig1102:155340..155820Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1102 155341..155820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1102.5.1prot_H-akashiwo_Contig1102.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1102 155341..155820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1102.5.1

>prot_H-akashiwo_Contig1102.5.1 ID=prot_H-akashiwo_Contig1102.5.1|Name=mRNA_H-akashiwo_Contig1102.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=160bp
MEGASVINIRSGRDLNVYIRQHENPQAPTVFFVHGACASMVQFAPLVDIL
KQRFSIVAYDLYGCGGSPKPESWHAYATEEHRQDLFALYQKFATDVNFMI
GHSFGTSLVLSLASVGSKKHIHGMVLIGSTHIPGPVPVPLVFRLPLFLLN
CLQAAEPPG*
back to top

mRNA from alignment at H-akashiwo_Contig1102:155320..156587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1102.5.1 ID=mRNA_H-akashiwo_Contig1102.5.1|Name=mRNA_H-akashiwo_Contig1102.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1268bp|location=Sequence derived from alignment at H-akashiwo_Contig1102:155320..156587+ (Heterosigma akashiwo CCMP452)
CAGACACAGGGCACACAGAAAATGGAAGGGGCTTCTGTAATCAATATCCG CTCTGGACGCGACCTGAACGTGTACATTCGGCAGCACGAGAACCCACAAG CCCCGACCGTCTTTTTTGTTCACGGGGCCTGTGCCTCCATGGTCCAATTT GCACCGTTGGTGGATATTTTGAAGCAGAGATTCTCCATCGTCGCTTACGA CCTGTACGGCTGTGGGGGTAGCCCAAAGCCCGAATCTTGGCATGCGTACG CAACAGAGGAACACAGGCAAGACCTGTTTGCTCTGTACCAGAAGTTTGCC ACCGACGTGAACTTCATGATCGGCCACTCCTTTGGCACCTCACTGGTGCT GAGCCTGGCGAGCGTGGGCTCCAAGAAACACATCCACGGCATGGTCCTCA TCGGCAGCACCCACATCCCTGGGCCCGTCCCCGTGCCTCTGGTCTTCCGG CTTCCCCTGTTCCTGCTGAACTGCCTCCAGGCCGCTGAGCCGCCCGGTTA AATGCGCCAGCGCGTACACCGCCGCGCGCCCGGCCGCCCCTGCTGGCGGG CCCTGGCCCTGTGCAACGCCAACCCCATGCACATGGTGCGGGCCTTCTAC CGCCAGGCCAAGTGGGCCAAGCCCGACGCGGTGCGGTTCGTCCCCAACCC CGCCCTCCTCGTCCACGGCGCGGAGGACCGGGTCCTCCCCCTGGCGGGCG CCCGCGCGCTGGAGCGGGCGCTGCCCGCGGCCGAGCTGAAGGTGGTGCCG GGGGCCGGGCACATGGTCATGGAGGAGCGGCCCGCGGAGGTGGCGGCGCT CGTCGGCGCGTTCCTGGCGGGGGTGCTCGAGGAGCGGCGGACTGACCGGC TCTTCATCTACCTGGGCCAGACGGCGGAGTCCTACTCCCAGGAGGCGGCG GTGGTGGGCGGCGTGAACTGAGCGGGCGGGCTGCCGGGGCCTGTTGTTGC GCAACGGCCGTTTCCCCCCTGCCAAGGGCTCCCTGAAACCAGGACTCTAC TTAGCCAAAATGAAGTGCATGCAACGCAATCCATGCAACACATCACAGTC AAAGAGACACAGCAGGCAACATGTTGAAGGAATGAGGTTTTGTGTGGAGG TTTCTTTGGGGGGCAATCAGCACCACACACCAAACCTGGCAATAGCCCCA ATATCAAGCTTTTTGAACTGGAAAATAAAATTGCATTTATGTTCTTTGTA TGCACGGATGAAAGAAATGAATGCGCTTGATCCCTTCTCAAGCAGGTCCT ATTGGCGGAGCATGCATA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1102:155320..156587+

>mRNA_H-akashiwo_Contig1102.5.1 ID=mRNA_H-akashiwo_Contig1102.5.1|Name=mRNA_H-akashiwo_Contig1102.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=480bp|location=Sequence derived from alignment at H-akashiwo_Contig1102:155320..156587+ (Heterosigma akashiwo CCMP452)
ATGGAAGGGGCTTCTGTAATCAATATCCGCTCTGGACGCGACCTGAACGT
GTACATTCGGCAGCACGAGAACCCACAAGCCCCGACCGTCTTTTTTGTTC
ACGGGGCCTGTGCCTCCATGGTCCAATTTGCACCGTTGGTGGATATTTTG
AAGCAGAGATTCTCCATCGTCGCTTACGACCTGTACGGCTGTGGGGGTAG
CCCAAAGCCCGAATCTTGGCATGCGTACGCAACAGAGGAACACAGGCAAG
ACCTGTTTGCTCTGTACCAGAAGTTTGCCACCGACGTGAACTTCATGATC
GGCCACTCCTTTGGCACCTCACTGGTGCTGAGCCTGGCGAGCGTGGGCTC
CAAGAAACACATCCACGGCATGGTCCTCATCGGCAGCACCCACATCCCTG
GGCCCGTCCCCGTGCCTCTGGTCTTCCGGCTTCCCCTGTTCCTGCTGAAC
TGCCTCCAGGCCGCTGAGCCGCCCGGTTAA
back to top