mRNA_H-akashiwo_Contig110.42.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.42.1
Unique NamemRNA_H-akashiwo_Contig110.42.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 120 bits (302), Expect = 2.830e-30
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            GPDGVSPRVLK CA +L  PL RLFQK+ +AA FP SWKVARVTPVYKK DA+ PKNYRP+SVLPTLATTFERV
Sbjct:  330 GPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVYKKEDASLPKNYRPISVLPTLATTFERV 403          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 118 bits (296), Expect = 2.220e-29
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            GPDGVSPRVLK CA +L  PL RLFQK+ +AA FP SWKVARVTPV+KK DA  PKNYRP+SVLPTLATTFERV
Sbjct:  330 GPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVHKKEDANLPKNYRPISVLPTLATTFERV 403          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A093J4Z1_FULGA (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=A0A093J4Z1_FULGA)

HSP 1 Score: 78.2 bits (191), Expect = 4.460e-17
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFER 219
            GPDG+ PRVL+  AKEL  PL+ ++Q+       PD W++A V+P+YKKG   DP NYRPVS+   L    ER
Sbjct:   23 GPDGIHPRVLRELAKELAKPLSIIYQQSWLTGDVPDDWRLANVSPIYKKGQKEDPGNYRPVSLTSVLGNIMER 95          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: UPI001E1CD5A2 (uncharacterized protein LOC123519737 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD5A2)

HSP 1 Score: 83.2 bits (204), Expect = 5.900e-17
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFE 216
            GPDG+SPRVLK CA+EL  PLA +F        +P SWK A V PV+KKG  +DP++YRP+S+L  +   FE
Sbjct:  404 GPDGISPRVLKQCARELSVPLAAIFSACLAEKKWPASWKEAYVVPVHKKGSKSDPRHYRPISLLSVMGKVFE 475          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A0P4VX79_SCYOL (Uncharacterized protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VX79_SCYOL)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-16
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            GPD VSPR+LKHCA+EL  PL  +F    R   +P  WK ARV PV+KK   ++P NYRP+S+L  +    E++
Sbjct:  384 GPDDVSPRLLKHCARELSAPLTTVFTSCLREKKWPSVWKEARVVPVHKKNSRSEPNNYRPISLLSVMGKLLEKI 457          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A1X7U5L0_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U5L0_AMPQE)

HSP 1 Score: 80.9 bits (198), Expect = 1.670e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            G DG+SP VLKHCA  L  PL  LF +  ++A FP  WKV  +TP++K GD T  +NYRP+S+L T++   E++
Sbjct:  239 GIDGISPAVLKHCATPLCTPLCHLFCESLKSACFPSDWKVHNITPIFKSGDKTSVRNYRPISLLNTVSKVLEKL 312          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A8J9YRX4_BRALA (Hypp6244 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YRX4_BRALA)

HSP 1 Score: 81.6 bits (200), Expect = 2.120e-16
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            GPDG++ ++L+  A E+   L +LF       +FP  WK + VTPV+KKGD TDP NYRP+S+LPT+A  FER+
Sbjct:  176 GPDGITTKLLREAALEICVSLQQLFNYSLSTGIFPMEWKQSNVTPVFKKGDRTDPLNYRPISLLPTVAKVFERL 249          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: Q0MWX5_9NEOP (Reverse transcriptase (Fragment) n=1 Tax=Phengaris teleius TaxID=203778 RepID=Q0MWX5_9NEOP)

HSP 1 Score: 77.4 bits (189), Expect = 4.770e-16
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFE 216
            GPDG+ P  ++ C   L  PL+ +F K      FPD WK+A++TP+YK GD  D  NYRP+S+L  LA  FE
Sbjct:    1 GPDGIPPFFVRMCGSALSTPLSIIFNKSLSQGTFPDLWKIAKITPIYKCGDKNDVTNYRPISILNCLAKIFE 72          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: UPI0012D451D1 (uncharacterized protein LOC116346514 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D451D1)

HSP 1 Score: 76.6 bits (187), Expect = 6.470e-16
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSVLPTLATTFERV 222
            GPDG+SP++LK+CAK L  PL  LF+K       PD  K +R+ P++K G      NYRPV ++PT+A  FE V
Sbjct:   75 GPDGISPKLLKNCAKSLATPLTVLFRKSLHQGCVPDVLKKSRIVPIFKSGKKNSASNYRPVVIIPTIAKIFEMV 148          
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Match: A0A093NT31_PYGAD (Uncharacterized protein (Fragment) n=1 Tax=Pygoscelis adeliae TaxID=9238 RepID=A0A093NT31_PYGAD)

HSP 1 Score: 73.9 bits (180), Expect = 1.180e-15
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKGDATDPKNYRPVSV 189
            GPDG+ PRVL+  A+EL  PL+ ++Q+       PD W++A VTP+YKKG   DP NYRPVS+
Sbjct:    1 GPDGIHPRVLRELAEELAKPLSIIYQQSWLTGEVPDDWRLANVTPIYKKGRKKDPGNYRPVSL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8Z6_HETAK2.830e-3079.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8N4_HETAK2.220e-2978.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A093J4Z1_FULGA4.460e-1749.32RNA-directed DNA polymerase from mobile element jo... [more]
UPI001E1CD5A25.900e-1752.78uncharacterized protein LOC123519737 n=1 Tax=Portu... [more]
A0A0P4VX79_SCYOL1.570e-1648.65Uncharacterized protein n=1 Tax=Scylla olivacea Ta... [more]
A0A1X7U5L0_AMPQE1.670e-1648.65Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A8J9YRX4_BRALA2.120e-1650.00Hypp6244 protein n=1 Tax=Branchiostoma lanceolatum... [more]
Q0MWX5_9NEOP4.770e-1647.22Reverse transcriptase (Fragment) n=1 Tax=Phengaris... [more]
UPI0012D451D16.470e-1647.30uncharacterized protein LOC116346514 n=1 Tax=Conta... [more]
A0A093NT31_PYGAD1.180e-1552.38Uncharacterized protein (Fragment) n=1 Tax=Pygosce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:1635698..1635921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15713212
Model size224
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.73e-17
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3APVV@33154|Opisthokonta,3C281@33208|Metazoa
DescriptionRibonuclease H protein
Cds size222
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.4912062-CDS-H-akashiwo_Contig110:1635697..16359191681387082.4912062-CDS-H-akashiwo_Contig110:1635697..1635919Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 1635698..1635919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.42.1prot_H-akashiwo_Contig110.42.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 1635698..1635919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.42.1

>prot_H-akashiwo_Contig110.42.1 ID=prot_H-akashiwo_Contig110.42.1|Name=mRNA_H-akashiwo_Contig110.42.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
GPDGVSPRVLKHCAKELDGPLARLFQKVERAAVFPDSWKVARVTPVYKKG
DATDPKNYRPVSVLPTLATTFERV
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mRNA from alignment at H-akashiwo_Contig110:1635698..1635921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.42.1 ID=mRNA_H-akashiwo_Contig110.42.1|Name=mRNA_H-akashiwo_Contig110.42.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=224bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1635698..1635921+ (Heterosigma akashiwo CCMP452)
GGCCCGGATGGAGTCAGCCCACGTGTCCTCAAGCACTGCGCCAAGGAGCT GGACGGTCCGTTGGCCCGCCTGTTTCAGAAGGTGGAAAGGGCGGCAGTTT TCCCGGACAGCTGGAAGGTGGCCCGGGTGACTCCGGTGTACAAAAAGGGT GATGCCACAGATCCCAAGAACTACCGGCCAGTCTCGGTGCTGCCAACCCT GGCGACAACTTTTGAGCGCGTGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1635698..1635921+

>mRNA_H-akashiwo_Contig110.42.1 ID=mRNA_H-akashiwo_Contig110.42.1|Name=mRNA_H-akashiwo_Contig110.42.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1635698..1635921+ (Heterosigma akashiwo CCMP452)
GGCCCGGATGGAGTCAGCCCACGTGTCCTCAAGCACTGCGCCAAGGAGCT
GGACGGTCCGTTGGCCCGCCTGTTTCAGAAGGTGGAAAGGGCGGCAGTTT
TCCCGGACAGCTGGAAGGTGGCCCGGGTGACTCCGGTGTACAAAAAGGGT
GATGCCACAGATCCCAAGAACTACCGGCCAGTCTCGGTGCTGCCAACCCT
GGCGACAACTTTTGAGCGCGTG
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