mRNA_H-akashiwo_Contig110.34.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.34.1
Unique NamemRNA_H-akashiwo_Contig110.34.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 254 bits (649), Expect = 3.870e-85
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:   19 TERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            TE MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    4 TETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.290e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 251 bits (642), Expect = 5.910e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A2M4CJ97_ANODA (Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A2M4CJ97_ANODA)

HSP 1 Score: 251 bits (641), Expect = 7.850e-84
Identity = 137/144 (95.14%), Postives = 140/144 (97.22%), Query Frame = 1 
Query:    7 KKHPTER-MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            KKHP  R MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 KKHPEGRTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 148
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A3P9AWS4_9CICH (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A3P9AWS4_9CICH)

HSP 1 Score: 250 bits (639), Expect = 1.250e-83
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   22 ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A7S0BVR9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BVR9_9RHOD)

HSP 1 Score: 251 bits (641), Expect = 2.090e-83
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   22 ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   40 ERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 177
[Close]
BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A672ZXG2_9TELE (Histone H3 n=6 Tax=Clupeocephala TaxID=186625 RepID=A0A672ZXG2_9TELE)

HSP 1 Score: 249 bits (637), Expect = 2.530e-83
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   13 HPTERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            HPT  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HPT--MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
[Close]
BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 250 bits (638), Expect = 2.760e-83
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   13 HPTERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            H T+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   14 HLTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
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BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 249 bits (635), Expect = 4.310e-83
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   28 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Match: A0A674HWZ8_TERCA (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A674HWZ8_TERCA)

HSP 1 Score: 249 bits (635), Expect = 4.460e-83
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 1 
Query:   25 RMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 435
            RMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 RMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK3.870e-8598.56Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA1.290e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S1BJN3_9STRA5.910e-8499.26Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A2M4CJ97_ANODA7.850e-8495.14Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340... [more]
A0A3P9AWS4_9CICH1.250e-8397.10Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A7S0BVR9_9RHOD2.090e-8397.83Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A672ZXG2_9TELE2.530e-8395.74Histone H3 n=6 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A164UB18_9CRUS2.760e-8395.04Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]
A7RJG4_NEMVE4.310e-8397.79Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A674HWZ8_TERCA4.460e-8397.08Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:1361588..1362026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008614757.1
PFAMsHistone
Model size439
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.2e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size411
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.1281126-UTR-H-akashiwo_Contig110:1361587..13616141681387082.1281126-UTR-H-akashiwo_Contig110:1361587..1361614Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig110 1361588..1361614 +
1681387082.146284-UTR-H-akashiwo_Contig110:1362025..13620261681387082.146284-UTR-H-akashiwo_Contig110:1362025..1362026Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig110 1362026..1362026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.1378207-CDS-H-akashiwo_Contig110:1361614..13620251681387082.1378207-CDS-H-akashiwo_Contig110:1361614..1362025Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 1361615..1362025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.34.1prot_H-akashiwo_Contig110.34.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 1361615..1362025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.34.1

>prot_H-akashiwo_Contig110.34.1 ID=prot_H-akashiwo_Contig110.34.1|Name=mRNA_H-akashiwo_Contig110.34.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-akashiwo_Contig110:1361588..1362026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.34.1 ID=mRNA_H-akashiwo_Contig110.34.1|Name=mRNA_H-akashiwo_Contig110.34.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=439bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1361588..1362026+ (Heterosigma akashiwo CCMP452)
AGTCCTAAGAAACATCCTACAGAAAGAATGGCCCGTACCAAGCAAACCGC
TCGTAAGTCCACCGGTGGCAAGGCTCCTCGCAAGCAGCTCGCCACCAAGG
CTGCTCGCAAGTCTGCCCCCGCTACCGGTGGTGTGAAGAAGCCCCACAGA
TACCGCCCTGGTACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTC
CACCGAGCTCCTGATCCGCAAGCTCCCTTTCCAGAGACTGGTCAGAGAGA
TTGCTCAAGACTTCAAGACTGACCTGAGATTCCAGGGTTCCGCTGTCCTT
GCCCTTCAGGAAGCCGCGGAGGCTTACCTTGTGGGTCTGTTTGAGGACAC
CAACCTCTGCGCCATTCACGCTAAGCGTGTGACCATCATGCCCAAGGACA
TCCAGCTTGCCCGCAGAATCCGCGGCGAGCGGTCTTAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1361588..1362026+

>mRNA_H-akashiwo_Contig110.34.1 ID=mRNA_H-akashiwo_Contig110.34.1|Name=mRNA_H-akashiwo_Contig110.34.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1361588..1362026+ (Heterosigma akashiwo CCMP452)
ATGGCCCGTACCAAGCAAACCGCTCGTAAGTCCACCGGTGGCAAGGCTCC
TCGCAAGCAGCTCGCCACCAAGGCTGCTCGCAAGTCTGCCCCCGCTACCG
GTGGTGTGAAGAAGCCCCACAGATACCGCCCTGGTACTGTCGCTCTTCGT
GAGATCAGACGTTACCAGAAGTCCACCGAGCTCCTGATCCGCAAGCTCCC
TTTCCAGAGACTGGTCAGAGAGATTGCTCAAGACTTCAAGACTGACCTGA
GATTCCAGGGTTCCGCTGTCCTTGCCCTTCAGGAAGCCGCGGAGGCTTAC
CTTGTGGGTCTGTTTGAGGACACCAACCTCTGCGCCATTCACGCTAAGCG
TGTGACCATCATGCCCAAGGACATCCAGCTTGCCCGCAGAATCCGCGGCG
AGCGGTCTTAA
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